mRNA_H-elongata_contig142979.2969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142979.2969.1
Unique NamemRNA_H-elongata_contig142979.2969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142979.2969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142979contigH-elongata_contig142979:461..1255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142979.2969.1prot_H-elongata_contig142979.2969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142979 614..1255 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.482834-UTR-H-elongata_contig142979:460..6131622929848.482834-UTR-H-elongata_contig142979:460..613Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142979 461..613 +
1691679182.014354-UTR-H-elongata_contig142979:460..6131691679182.014354-UTR-H-elongata_contig142979:460..613Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142979 461..613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.5000243-CDS-H-elongata_contig142979:613..7611622929848.5000243-CDS-H-elongata_contig142979:613..761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142979 614..761 +
1691679182.022388-CDS-H-elongata_contig142979:613..7611691679182.022388-CDS-H-elongata_contig142979:613..761Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142979 614..761 +
1622929848.5121202-CDS-H-elongata_contig142979:1202..12551622929848.5121202-CDS-H-elongata_contig142979:1202..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142979 1203..1255 +
1691679182.0308487-CDS-H-elongata_contig142979:1202..12551691679182.0308487-CDS-H-elongata_contig142979:1202..1255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142979 1203..1255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142979.2969.1

>prot_H-elongata_contig142979.2969.1 ID=prot_H-elongata_contig142979.2969.1|Name=mRNA_H-elongata_contig142979.2969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MARGDCCGRSTGWTCRRGLFWRIYRMDEESKKKLAELLRFILERNDYYAI
AQAKRPHHRPLPSAQFL
back to top

mRNA from alignment at H-elongata_contig142979:461..1255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142979.2969.1 ID=mRNA_H-elongata_contig142979.2969.1|Name=mRNA_H-elongata_contig142979.2969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=795bp|location=Sequence derived from alignment at H-elongata_contig142979:461..1255+ (Himanthalia elongata Himel1 dioecious)
GTCGGGAGAAGCGACACCATAAGCGTCTATGCACAAGACAGGAGGTGGAG
ACGAAGGTGAAAGCCGTAGCTACCAGTGACTGCCATCGTGTTAGGCATAG
CGACTGCTGCTGCTCTCATCGAAGGAGTTTCTCTCAAACGCAAAAGAGTG
CTCATGGCCCGCGGTGACTGTTGTGGGAGGAGCACGGGGTGGACCTGTCG
GCGCGGTCTGTTTTGGAGGATATACCGCATGGATGAAGAAAGTAAAAAAA
AACTGGCGGAGCTCTTGCGATTCATCCTTGAGCGCAACGACTACTACGCA
AGTAAGTTGGAGACAGGGCGTGTGGGTAAGGGTGTGGGTGGGTTGGAGAG
ACCAAGAGAGTCAAAAATATTGTGGCTGGAACTGTCGAGTGTTTGTACGT
TTCTCCTACTGCTGCTGCTGGCCTTATTTTGAGTACTCGTACTGTTGTAC
ATAAATTCAGTACTCGCGGGCGAATCACAAATTCGCAACTTTGCGCCCCC
TCGCATACTGTATCAAACACTGCGCTTCACCATCTCTGGTGTATCCCGCG
TGGGGTCATATGAGATGGCACTGAGGTGGTACGGTTGTAGGATTCCCTTG
GTTTTATTTGATTCATTATACTTTCTCTCTCTGGAACGCCAACAGTAGCC
TGATGTCTCCTTGATTTCTGCCTGCTATGCTTTCTGTCTGCTATGCTTTC
GTCCGCAAATTTACACCCTGCTATACTACGCTGCGGTTTCAGTTGCGCAG
GCGAAGCGACCTCATCACCGTCCTCTGCCGTCTGCACAATTTCTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig142979:461..1255+

>mRNA_H-elongata_contig142979.2969.1 ID=mRNA_H-elongata_contig142979.2969.1|Name=mRNA_H-elongata_contig142979.2969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig142979:461..1255+ (Himanthalia elongata Himel1 dioecious)
ATGGCCCGCGGTGACTGTTGTGGGAGGAGCACGGGGTGGACCTGTCGGCG
CGGTCTGTTTTGGAGGATATACCGCATGGATGAAGAAAGTAAAAAAAAAC
TGGCGGAGCTCTTGCGATTCATCCTTGAGCGCAACGACTACTACGCAAAT
GGCCCGCGGTGACTGTTGTGGGAGGAGCACGGGGTGGACCTGTCGGCGCG
GTCTGTTTTGGAGGATATACCGCATGGATGAAGAAAGTAAAAAAAAACTG
GCGGAGCTCTTGCGATTCATCCTTGAGCGCAACGACTACTACGCAATTGC
GCAGGCGAAGCGACCTCATCACCGTCCTCTGCCGTCTGCACAATTTCTTT
TGCGCAGGCGAAGCGACCTCATCACCGTCCTCTGCCGTCTGCACAATTTC
TT
back to top