mRNA_H-elongata_contig14291.2968.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14291.2968.1
Unique NamemRNA_H-elongata_contig14291.2968.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A6H5JDL1_9PHAE (Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDL1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.990e-39
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 IHRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGDDGTATATIMIMGDTCTRGC 204
            IHRKP+WLKAVPTQG NY+RLRSTVRELGLATVCEEAKCPNIGECWGG DGTATATIMIMGDTCTRGC
Sbjct:   93 IHRKPNWLKAVPTQGDNYERLRSTVRELGLATVCEEAKCPNIGECWGGADGTATATIMIMGDTCTRGC 160
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A836CIS6_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIS6_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.130e-38
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 IHRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGDDGTATATIMIMGDTCTRGC 204
            IHRKP WLKAVPTQG+NY +LR TVRELGLATVCEEAKCPNIGECWGG +GTATATIMIMGDTCTRGC
Sbjct:   88 IHRKPPWLKAVPTQGENYQKLRDTVRELGLATVCEEAKCPNIGECWGGKEGTATATIMIMGDTCTRGC 155
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BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A7S2USD1_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD1_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.020e-33
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:   10 KPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGDDGTATATIMIMGDTCTRGC 204
            KPSWLKA PT+G++Y RLR TVR LGLATVCEEA+CPNIGECWGG DGTATATIMIMGDTCTRGC
Sbjct:   68 KPSWLKARPTEGEDYHRLRDTVRRLGLATVCEEARCPNIGECWGGADGTATATIMIMGDTCTRGC 132
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A5D6XTL6_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTL6_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.010e-33
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    4 HRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGD-DGTATATIMIMGDTCTRGC 204
            +RKPSWLKA PTQG NY+RL+ TVR LGLATVCEEAKCPNIGECWGG  DG ATATIMIMGDTCTRGC
Sbjct:   88 NRKPSWLKAQPTQGANYERLKKTVRGLGLATVCEEAKCPNIGECWGGGKDGVATATIMIMGDTCTRGC 155
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: K3XAM6_GLOUD (Lipoyl synthase, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAM6_GLOUD)

HSP 1 Score: 125 bits (314), Expect = 6.470e-33
Identity = 57/68 (83.82%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    4 HRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGD-DGTATATIMIMGDTCTRGC 204
            +RKPSWLKA PTQG+NY+RL+ TVR LGLATVCEEAKCPNIGECWGG  DG ATATIM+MGDTCTRGC
Sbjct:   97 NRKPSWLKAQPTQGENYERLKKTVRGLGLATVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGC 164
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A8K1CWL2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CWL2_PYTOL)

HSP 1 Score: 124 bits (312), Expect = 1.160e-32
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    4 HRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGD-DGTATATIMIMGDTCTRGC 204
            +RKPSWLKA PTQG NY+RL+ TVR LGLATVCEEAKCPNIGECWGG  DG ATATIM+MGDTCTRGC
Sbjct:   90 NRKPSWLKAQPTQGPNYERLKQTVRGLGLATVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGC 157
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A2D4C414_PYTIN (Lipoyl synthase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C414_PYTIN)

HSP 1 Score: 124 bits (312), Expect = 1.290e-32
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    4 HRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGD-DGTATATIMIMGDTCTRGC 204
            +RKPSWLKA PTQG NY+RL+ TVR LGLATVCEEAKCPNIGECWGG  DG ATATIM+MGDTCTRGC
Sbjct:   97 NRKPSWLKAQPTQGANYERLKQTVRGLGLATVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGC 164
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A7S4DJC2_HETAK (Lipoyl synthase, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJC2_HETAK)

HSP 1 Score: 123 bits (309), Expect = 1.900e-32
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:   10 KPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGG-DDGTATATIMIMGDTCTRGC 204
            KP WLKAVPT+G+NY RLR +VR LGLATVCEEAKCPNIGECWGG +DG ATATIMIMGDTCTRGC
Sbjct:   62 KPRWLKAVPTEGENYTRLRESVRRLGLATVCEEAKCPNIGECWGGGEDGFATATIMIMGDTCTRGC 127
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: M4BVM0_HYAAE (Lipoyl synthase, mitochondrial n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVM0_HYAAE)

HSP 1 Score: 124 bits (310), Expect = 2.030e-32
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:    1 IHRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGD-DGTATATIMIMGDTCTRGC 204
            ++RKP WLKA PTQG NY+RLR TV+ LGL+TVCEEAKCPNIGECWGG  DG ATATIM+MGDTCTRGC
Sbjct:   83 LNRKPKWLKAQPTQGANYERLRKTVKSLGLSTVCEEAKCPNIGECWGGGKDGIATATIMLMGDTCTRGC 151
[Close]
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Match: A0A7R9U627_9STRA (Lipoyl synthase, mitochondrial n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U627_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.330e-32
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   10 KPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGG-DDGTATATIMIMGDTCTRGCR 207
            KP+WLKA P +G+NY RLR TVR LGLATVCEEA+CPNIGECWGG +DG ATATIM+MGDTCTRGCR
Sbjct:   69 KPAWLKAAPAEGENYQRLRDTVRGLGLATVCEEARCPNIGECWGGGEDGVATATIMVMGDTCTRGCR 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14291.2968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDL1_9PHAE1.990e-3994.12Lipoyl synthase, mitochondrial n=2 Tax=Ectocarpus ... [more]
A0A836CIS6_9STRA7.130e-3889.71Lipoyl synthase, mitochondrial n=1 Tax=Tribonema m... [more]
A0A7S2USD1_9STRA1.020e-3386.15Lipoyl synthase, mitochondrial n=1 Tax=Fibrocapsa ... [more]
A0A5D6XTL6_9STRA4.010e-3385.29Lipoyl synthase, mitochondrial n=1 Tax=Pythium bra... [more]
K3XAM6_GLOUD6.470e-3383.82Lipoyl synthase, mitochondrial n=1 Tax=Globisporan... [more]
A0A8K1CWL2_PYTOL1.160e-3283.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C414_PYTIN1.290e-3283.82Lipoyl synthase, mitochondrial n=1 Tax=Pythium ins... [more]
A0A7S4DJC2_HETAK1.900e-3284.85Lipoyl synthase, mitochondrial n=1 Tax=Heterosigma... [more]
M4BVM0_HYAAE2.030e-3279.71Lipoyl synthase, mitochondrial n=1 Tax=Hyaloperono... [more]
A0A7R9U627_9STRA3.330e-3280.60Lipoyl synthase, mitochondrial n=1 Tax=Pinguiococc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14291contigH-elongata_contig14291:7697..7906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue5.7e-32
Seed eggNOG ortholog2880.D8LUA7
Preferred nameLIAS
KEGG rclassRC01978
KEGG koko:K03644
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,map00785,map01100
GOsGO:0001505,GO:0001838,GO:0001841,GO:0001843,GO:0002009,GO:0002237,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006464,GO:0006520,GO:0006544,GO:0006546,GO:0006629,GO:0006631,GO:0006633,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006979,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009063,GO:0009069,GO:0009071,GO:0009106,GO:0009107,GO:0009108,GO:0009249,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010033,GO:0010467,GO:0014020,GO:0016053,GO:0016054,GO:0016331,GO:0016740,GO:0016782,GO:0016783,GO:0016992,GO:0017144,GO:0018065,GO:0018130,GO:0018193,GO:0018205,GO:0019538,GO:0019752,GO:0021915,GO:0031974,GO:0032496,GO:0032501,GO:0032502,GO:0032787,GO:0033993,GO:0034641,GO:0035148,GO:0035239,GO:0035295,GO:0036211,GO:0042133,GO:0042135,GO:0042221,GO:0042737,GO:0043009,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0046483,GO:0046872,GO:0046914,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0050896,GO:0051186,GO:0051188,GO:0051604,GO:0051704,GO:0051707,GO:0060429,GO:0060562,GO:0060606,GO:0065007,GO:0065008,GO:0070013,GO:0070283,GO:0071704,GO:0072175,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901700
EggNOG free text desc.lipoate synthase activity
EggNOG OGsCOG0320@1,KOG2672@2759
EC2.8.1.8
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRadical SAM
Ec32 orthologEc-14_004300.1
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.4186373-CDS-H-elongata_contig14291:7696..79061622929848.4186373-CDS-H-elongata_contig14291:7696..7906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14291 7697..7906 +
1691679182.0035675-CDS-H-elongata_contig14291:7696..79061691679182.0035675-CDS-H-elongata_contig14291:7696..7906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14291 7697..7906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14291.2968.1prot_H-elongata_contig14291.2968.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14291 7697..7906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14291.2968.1

>prot_H-elongata_contig14291.2968.1 ID=prot_H-elongata_contig14291.2968.1|Name=mRNA_H-elongata_contig14291.2968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
IHRKPSWLKAVPTQGKNYDRLRSTVRELGLATVCEEAKCPNIGECWGGDD
GTATATIMIMGDTCTRGCR*
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mRNA from alignment at H-elongata_contig14291:7697..7906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14291.2968.1 ID=mRNA_H-elongata_contig14291.2968.1|Name=mRNA_H-elongata_contig14291.2968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig14291:7697..7906+ (Himanthalia elongata Himel1 dioecious)
ATCCACCGTAAGCCCAGCTGGCTCAAGGCGGTCCCGACCCAAGGCAAGAA
CTACGACCGCCTCCGGTCGACGGTCAGGGAGCTCGGGTTGGCCACCGTTT
GCGAGGAAGCTAAGTGCCCGAACATTGGAGAGTGTTGGGGGGGCGATGAC
GGCACCGCCACCGCGACGATCATGATCATGGGAGACACTTGCACGCGAGG
TTGCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14291:7697..7906+

>mRNA_H-elongata_contig14291.2968.1 ID=mRNA_H-elongata_contig14291.2968.1|Name=mRNA_H-elongata_contig14291.2968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig14291:7697..7906+ (Himanthalia elongata Himel1 dioecious)
ATCCACCGTAAGCCCAGCTGGCTCAAGGCGGTCCCGACCCAAGGCAAGAA
CTACGACCGCCTCCGGTCGACGGTCAGGGAGCTCGGGTTGGCCACCGTTT
GCGAGGAAGCTAAGTGCCCGAACATTGGAGAGTGTTGGGGGGGCGATGAC
GGCACCGCCACCGCGACGATCATGATCATGGGAGACACTTGCACGCGAGG
TTGCAGGTGAATCCACCGTAAGCCCAGCTGGCTCAAGGCGGTCCCGACCC
AAGGCAAGAACTACGACCGCCTCCGGTCGACGGTCAGGGAGCTCGGGTTG
GCCACCGTTTGCGAGGAAGCTAAGTGCCCGAACATTGGAGAGTGTTGGGG
GGGCGATGACGGCACCGCCACCGCGACGATCATGATCATGGGAGACACTT
GCACGCGAGGTTGCAGGTGA
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