mRNA_H-elongata_contig142844.2964.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142844.2964.1
Unique NamemRNA_H-elongata_contig142844.2964.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: D8LTB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB4_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.520e-47
Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 1
Query:    1 EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAKPE 252
            EDLRIEGHWRVNG+HY+RTSEAWL RMD  KEEI+P+L +IYGEG ++KWFVYWRLFFIACAELF YR GEEWMV+HYLFAKPE
Sbjct:  275 EDLRIEGHWRVNGTHYARTSEAWLSRMDENKEEIMPILGEIYGEGTELKWFVYWRLFFIACAELFNYRKGEEWMVSHYLFAKPE 358          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: A0A835YH28_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH28_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.590e-41
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAKP 249
            +DLRIEGHWRVNG+HY+RTSEAWL++MD  K  +LP+LA IYG G++ KWFVYWRLFFIACAELF Y NG++WMV+HYLF KP
Sbjct:  276 DDLRIEGHWRVNGTHYARTSEAWLRQMDDNKAALLPLLADIYGAGSETKWFVYWRLFFIACAELFNYENGQQWMVSHYLFNKP 358          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: A0A7S2FL41_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FL41_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.360e-35
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 DLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
            +L I+ HWRV+G HY +TSEAWLKR+D  K  +LPVLAK YG+G ++KWF+ WRLF++ACAELFG+R G EW+V+HY F K
Sbjct:  112 NLTIDAHWRVSGEHYQKTSEAWLKRLDAHKTALLPVLAKTYGQGEELKWFMNWRLFYLACAELFGFRGGNEWVVSHYRFVK 192          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: UPI0014120AE8 (cyclopropane-fatty-acyl-phospholipid synthase family protein n=1 Tax=Emticicia sp. CRIBPO TaxID=2683258 RepID=UPI0014120AE8)

HSP 1 Score: 131 bits (330), Expect = 2.040e-35
Identity = 53/82 (64.63%), Postives = 69/82 (84.15%), Query Frame = 1
Query:    1 EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
            EDL IE HW+++G+HY+RTSEAWLK MD  K+EI+P+ A  YG GN  KW+VYWR+F+++CAEL+ YRNGEEW+V+HYLF K
Sbjct:  260 EDLSIENHWQLDGTHYARTSEAWLKNMDQHKKEIMPLFAATYGAGNATKWWVYWRIFYMSCAELWNYRNGEEWIVSHYLFNK 341          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: A0A7W1UN70_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7W1UN70_9BACT)

HSP 1 Score: 127 bits (318), Expect = 2.630e-35
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
            E L IE HW VNG HYS+TSEAWL+ MD  K EI+P+  + YG+ + +KW+VYWR+F++ACAEL+GY NGEEW+V+HYLF K
Sbjct:   99 EHLSIEQHWHVNGMHYSKTSEAWLRNMDKHKSEIMPLFEETYGKDHAVKWWVYWRIFYLACAELWGYNNGEEWIVSHYLFTK 180          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: A0A7Y4XTA1_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4XTA1_9BACT)

HSP 1 Score: 130 bits (328), Expect = 6.870e-35
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1
Query:    7 LRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
             +IE HWRVNG HYS+TSEAWL +MD  KE I+P+  K YGE   +KW+VYWR+FF+ACAELFGY+NG EWMV+HYLF K
Sbjct:  262 FKIEKHWRVNGMHYSKTSEAWLTKMDEHKELIMPLFEKTYGENQAVKWWVYWRVFFMACAELFGYKNGTEWMVSHYLFEK 341          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: UPI00131B35F3 (cyclopropane-fatty-acyl-phospholipid synthase family protein n=1 Tax=Pedobacter sp. L105 TaxID=1641871 RepID=UPI00131B35F3)

HSP 1 Score: 130 bits (326), Expect = 8.160e-35
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
            +DL IE  W VNG HYS+TSEAWL  MD  K+EI+P+  K YG+   +KW+VYWRLF+IACAELFGYRNG EWMV HYLF K
Sbjct:  260 DDLTIENLWVVNGMHYSKTSEAWLSNMDRHKKEIMPIFEKTYGKDQALKWWVYWRLFYIACAELFGYRNGNEWMVCHYLFKK 341          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: A0A2R7L4U2_9SPHI (SAM-dependent methyltransferase n=1 Tax=Pedobacter sp. HMWF019 TaxID=2056856 RepID=A0A2R7L4U2_9SPHI)

HSP 1 Score: 129 bits (325), Expect = 1.170e-34
Identity = 50/82 (60.98%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
            EDL+++ HW VNG+HY++T+EAWL +MDT K EI+P+  + YG+   +KW+VYWRLF+++CAELFGY+NG EWMV HYLF K
Sbjct:  260 EDLKVQKHWIVNGTHYAKTAEAWLSKMDTHKTEIIPIFEQTYGKDQTLKWWVYWRLFYMSCAELFGYKNGNEWMVCHYLFYK 341          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: A0A520C6J3_9SPHI (SAM-dependent methyltransferase (Fragment) n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A520C6J3_9SPHI)

HSP 1 Score: 122 bits (307), Expect = 1.550e-34
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
            +DL+IE HW VNG++Y +TSEAWL  MD  K+EI+P+L   YG+   +KW+VYWRLF++ACAELF Y  G EWMV HYLF K
Sbjct:   28 DDLKIEKHWVVNGTNYGKTSEAWLSNMDKHKKEIMPILENTYGKDQAVKWWVYWRLFYMACAELFNYNKGNEWMVCHYLFEK 109          
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Match: A0A2P2E507_9LEPT (Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Leptospira ryugenii TaxID=1917863 RepID=A0A2P2E507_9LEPT)

HSP 1 Score: 128 bits (322), Expect = 3.130e-34
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 DLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKWFVYWRLFFIACAELFGYRNGEEWMVAHYLFAK 246
            D  IE HWRVNG+HY++TSEAW + +   K++I+P+LAK YGE  K KWFVYW++FF+ACAEL+GY+ GEEW V+HYLF K
Sbjct:  261 DFLIEDHWRVNGTHYAKTSEAWYENLLANKDKIMPILAKTYGESEKTKWFVYWKVFFLACAELWGYKQGEEWFVSHYLFRK 341          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142844.2964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTB4_ECTSI3.520e-4782.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YH28_9STRA4.590e-4173.49S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2FL41_9STRA1.360e-3562.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI0014120AE82.040e-3564.63cyclopropane-fatty-acyl-phospholipid synthase fami... [more]
A0A7W1UN70_9BACT2.630e-3562.20Class I SAM-dependent methyltransferase n=1 Tax=Ba... [more]
A0A7Y4XTA1_9BACT6.870e-3567.50Class I SAM-dependent methyltransferase n=1 Tax=Cy... [more]
UPI00131B35F38.160e-3567.07cyclopropane-fatty-acyl-phospholipid synthase fami... [more]
A0A2R7L4U2_9SPHI1.170e-3460.98SAM-dependent methyltransferase n=1 Tax=Pedobacter... [more]
A0A520C6J3_9SPHI1.550e-3460.98SAM-dependent methyltransferase (Fragment) n=1 Tax... [more]
A0A2P2E507_9LEPT3.130e-3462.96Cyclopropane-fatty-acyl-phospholipid synthase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142844contigH-elongata_contig142844:1..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.7e-38
Seed eggNOG ortholog2880.D8LTB4
EggNOG free text desc.Mycolic acid cyclopropane synthetase
EggNOG OGs2QQW3@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929848.0771337-CDS-H-elongata_contig142844:0..1321622929848.0771337-CDS-H-elongata_contig142844:0..132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142844 1..132 +
1691679181.926795-CDS-H-elongata_contig142844:0..1321691679181.926795-CDS-H-elongata_contig142844:0..132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142844 1..132 +
1622929848.208987-CDS-H-elongata_contig142844:512..6351622929848.208987-CDS-H-elongata_contig142844:512..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142844 513..635 +
1691679181.9360297-CDS-H-elongata_contig142844:512..6351691679181.9360297-CDS-H-elongata_contig142844:512..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142844 513..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142844.2964.1prot_H-elongata_contig142844.2964.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142844 1..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142844.2964.1

>prot_H-elongata_contig142844.2964.1 ID=prot_H-elongata_contig142844.2964.1|Name=mRNA_H-elongata_contig142844.2964.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
EDLRIEGHWRVNGSHYSRTSEAWLKRMDTQKEEILPVLAKIYGEGNKMKW
FVYWRLFFIACAELFGYRNGEEWMVAHYLFAKPE*
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mRNA from alignment at H-elongata_contig142844:1..635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142844.2964.1 ID=mRNA_H-elongata_contig142844.2964.1|Name=mRNA_H-elongata_contig142844.2964.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=635bp|location=Sequence derived from alignment at H-elongata_contig142844:1..635+ (Himanthalia elongata Himel1 dioecious)
GAAGACTTGAGGATAGAGGGTCATTGGCGAGTGAACGGAAGTCACTATTC AAGGACCTCCGAGGCGTGGCTCAAACGGATGGACACTCAGAAAGAGGAGA TCCTGCCCGTTCTTGCAAAAATTTACGGAGAGGTAAGGAGGAGTCTGGCA CGGGACTCTTCGAAGTCAAATATATTTGTGTGTTTATGTGTGTTCTTCTC ATTGATCGCTTGAACCCTAATTAAATGCCCGATTATGTATGGGGTGTCTA TAATCGTACGCCTCTCCGTACAGATAATCGTAGCCTATCTTTGATCATTC ACCGAGTCGTTTCCAGTCAGGGTAACCGCCATACCGTCCTGACGCAAATC CGCAGCGTCCCCTCGATCTTAATTGGACCAACCGTTCGTTCCATGCGAGC GTCGCGCGTTGACCCGATTGTTTTACCCCCCAGCGCGCACGATCGTTCAT GTCCCCCATTCTAACAAAGTGACGCGTTGCAACGCGACGGGATGCGATCT CCGTTGGCGCAGGGAAACAAGATGAAATGGTTTGTGTACTGGCGACTTTT CTTTATCGCCTGCGCGGAGCTGTTCGGCTACCGGAACGGCGAGGAATGGA TGGTGGCTCACTACCTGTTCGCGAAGCCCGAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig142844:1..635+

>mRNA_H-elongata_contig142844.2964.1 ID=mRNA_H-elongata_contig142844.2964.1|Name=mRNA_H-elongata_contig142844.2964.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig142844:1..635+ (Himanthalia elongata Himel1 dioecious)
GAAGACTTGAGGATAGAGGGTCATTGGCGAGTGAACGGAAGTCACTATTC
AAGGACCTCCGAGGCGTGGCTCAAACGGATGGACACTCAGAAAGAGGAGA
TCCTGCCCGTTCTTGCAAAAATTTACGGAGAGGAAGACTTGAGGATAGAG
GGTCATTGGCGAGTGAACGGAAGTCACTATTCAAGGACCTCCGAGGCGTG
GCTCAAACGGATGGACACTCAGAAAGAGGAGATCCTGCCCGTTCTTGCAA
AAATTTACGGAGAGGGAAACAAGATGAAATGGTTTGTGTACTGGCGACTT
TTCTTTATCGCCTGCGCGGAGCTGTTCGGCTACCGGAACGGCGAGGAATG
GATGGTGGCTCACTACCTGTTCGCGAAGCCCGAATGAGGAAACAAGATGA
AATGGTTTGTGTACTGGCGACTTTTCTTTATCGCCTGCGCGGAGCTGTTC
GGCTACCGGAACGGCGAGGAATGGATGGTGGCTCACTACCTGTTCGCGAA
GCCCGAATGA
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