mRNA_H-elongata_contig142836.2963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142836.2963.1
Unique NamemRNA_H-elongata_contig142836.2963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142836.2963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142836contigH-elongata_contig142836:2..390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size376
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142836.2963.1prot_H-elongata_contig142836.2963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142836 34..289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.964083-UTR-H-elongata_contig142836:1..331622929847.964083-UTR-H-elongata_contig142836:1..33Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142836 2..33 +
1691679181.893748-UTR-H-elongata_contig142836:1..331691679181.893748-UTR-H-elongata_contig142836:1..33Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142836 2..33 +
1622929848.0148304-UTR-H-elongata_contig142836:289..3901622929848.0148304-UTR-H-elongata_contig142836:289..390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142836 290..390 +
1691679181.9155295-UTR-H-elongata_contig142836:289..3901691679181.9155295-UTR-H-elongata_contig142836:289..390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142836 290..390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.9874218-CDS-H-elongata_contig142836:33..1241622929847.9874218-CDS-H-elongata_contig142836:33..124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142836 34..124 +
1691679181.9011242-CDS-H-elongata_contig142836:33..1241691679181.9011242-CDS-H-elongata_contig142836:33..124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142836 34..124 +
1622929848.0022218-CDS-H-elongata_contig142836:137..2891622929848.0022218-CDS-H-elongata_contig142836:137..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142836 138..289 +
1691679181.908382-CDS-H-elongata_contig142836:137..2891691679181.908382-CDS-H-elongata_contig142836:137..289Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142836 138..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142836.2963.1

>prot_H-elongata_contig142836.2963.1 ID=prot_H-elongata_contig142836.2963.1|Name=mRNA_H-elongata_contig142836.2963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MYYRCNSPSCPRCPISGRNTPKGWHCGFECAVAPPPQHLASLRLLAGRPR
SLPTPSHSSLWQRWCRWGSWPSQGFRVPHN*
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mRNA from alignment at H-elongata_contig142836:2..390+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142836.2963.1 ID=mRNA_H-elongata_contig142836.2963.1|Name=mRNA_H-elongata_contig142836.2963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=389bp|location=Sequence derived from alignment at H-elongata_contig142836:2..390+ (Himanthalia elongata Himel1 dioecious)
TCGATCTTATTTGCGTTGCCTGAACAACCTTGATGTACTACCGCTGCAAC
TCTCCTTCCTGTCCCCGTTGCCCCATCTCGGGGCGCAATACTCCAAAGGG
TTGGCATTGCGGTTTCGAATGCGGTTTCGAATGAAGCCGTAGCCCCACCC
CCTCAACACCTAGCTTCTCTGAGGCTACTTGCGGGACGGCCGCGTTCGCT
ACCGACACCGTCACATTCGTCACTGTGGCAGCGGTGGTGTCGTTGGGGAT
CGTGGCCTTCTCAAGGTTTCCGAGTCCCCCATAATTAGAGGACGTTCGAG
GTAATCCGCAACACACGAAAGGGGTTCCGAGGTTCAGCTGGTATGATTTT
CATAAGAGCTCATTCAACCCTCCGATCATCCACAAATTC
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Coding sequence (CDS) from alignment at H-elongata_contig142836:2..390+

>mRNA_H-elongata_contig142836.2963.1 ID=mRNA_H-elongata_contig142836.2963.1|Name=mRNA_H-elongata_contig142836.2963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig142836:2..390+ (Himanthalia elongata Himel1 dioecious)
ATGTACTACCGCTGCAACTCTCCTTCCTGTCCCCGTTGCCCCATCTCGGG
GCGCAATACTCCAAAGGGTTGGCATTGCGGTTTCGAATGCGATGTACTAC
CGCTGCAACTCTCCTTCCTGTCCCCGTTGCCCCATCTCGGGGCGCAATAC
TCCAAAGGGTTGGCATTGCGGTTTCGAATGCGCCGTAGCCCCACCCCCTC
AACACCTAGCTTCTCTGAGGCTACTTGCGGGACGGCCGCGTTCGCTACCG
ACACCGTCACATTCGTCACTGTGGCAGCGGTGGTGTCGTTGGGGATCGTG
GCCTTCTCAAGGTTTCCGAGTCCCCCATAATTAGCCGTAGCCCCACCCCC
TCAACACCTAGCTTCTCTGAGGCTACTTGCGGGACGGCCGCGTTCGCTAC
CGACACCGTCACATTCGTCACTGTGGCAGCGGTGGTGTCGTTGGGGATCG
TGGCCTTCTCAAGGTTTCCGAGTCCCCCATAATTAG
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