mRNA_H-elongata_contig14277.2958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14277.2958.1
Unique NamemRNA_H-elongata_contig14277.2958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A0A0RTZ6_SACJA (Phosphomannomutase n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A0A0RTZ6_SACJA)

HSP 1 Score: 362 bits (930), Expect = 1.090e-122
Identity = 171/192 (89.06%), Postives = 182/192 (94.79%), Query Frame = 1 
Query:    1 AVMDDYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELFFKD 576
            +VM+DYDYSFSQNGLVAYKAG+LIG +TIS HVGE+N+KKIINWVLKY+SG+DIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYD VHKIRETMVA MR EF+DLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEG AEYDEIHFFGDKTF+GGND EIFESERTIGHTVT P DTI+ CKELFFKD
Sbjct:   61 SVMEDYDYSFSQNGLVAYKAGELIGQQTISKHVGEENLKKIINWVLKYMSGIDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDNVHKIRETMVAAMREEFADLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGTAEYDEIHFFGDKTFKGGNDNEIFESERTIGHTVTSPADTIQQCKELFFKD 252
[Close]
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: UPI0009C0FA5A (phosphomannomutase isoform X2 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009C0FA5A)

HSP 1 Score: 289 bits (739), Expect = 2.220e-94
Identity = 128/192 (66.67%), Postives = 165/192 (85.94%), Query Frame = 1 
Query:    1 AVMDDYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELFFKD 576
            AV+ DYDY FS+NGL+A+K GK IGT+++   +GED +K++IN+ L Y++ +DIP+KRGTFIEFR+GMLN+SP+GRNCS EER+ FEQYDKVH +R+ MVA +R +F+ LNLTFSIGGQISFD+FP GWDKT+CL++L +    + EIHFFGDKT++GGNDYEIFESERTIGHTVTCP+DT+KLC ELF ++
Sbjct:   12 AVISDYDYVFSENGLIAHKDGKHIGTQSLKSFLGEDKLKELINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSHEERNEFEQYDKVHNVRQKMVAILREKFAHLNLTFSIGGQISFDVFPNGWDKTYCLRYLDD----FQEIHFFGDKTYKGGNDYEIFESERTIGHTVTCPDDTLKLCTELFLRN 199
[Close]
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A7S1Y4G5_9STRA (Phosphomannomutase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y4G5_9STRA)

HSP 1 Score: 288 bits (737), Expect = 1.740e-93
Identity = 131/184 (71.20%), Postives = 160/184 (86.96%), Query Frame = 1 
Query:   16 YDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELF 567
            + Y+FSQNGLVAYK G+L+  +TIS H+GEDN+K+I+NW LKYLS VDIPVKRGTFIEFR+GM+NISP+GRNCS+ ER+ +E++D  H IR+ MV  M+ EF++LNLTFSIGGQISFD+FPTGWDKT+CL+FL EG  ++DE+HFFGDKTFEGGNDYEIF S+RTIGHTVT P+DT K C ELF
Sbjct:   65 FPYNFSQNGLVAYKNGELLEIQTISKHLGEDNIKRIVNWTLKYLSDVDIPVKRGTFIEFRSGMMNISPIGRNCSRPERNDYEKFDLEHNIRKNMVEAMKKEFAELNLTFSIGGQISFDVFPTGWDKTYCLKFLAEG--DFDEVHFFGDKTFEGGNDYEIFTSDRTIGHTVTSPDDTKKQCTELF 246
[Close]
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: W1NI90_AMBTC (Phosphomannomutase n=3 Tax=Magnoliopsida TaxID=3398 RepID=W1NI90_AMBTC)

HSP 1 Score: 287 bits (735), Expect = 4.570e-92
Identity = 127/191 (66.49%), Postives = 164/191 (85.86%), Query Frame = 1 
Query:    4 VMDDYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELFFKD 576
            V+ DYDY FS+NGL+A+K GK IGT+++   +GED +K++IN+ L Y++ +DIP+KRGTFIEFR+GMLN+SP+GRNCS EER+ FEQYDKVH +R+ MVA +R +F+ LNLTFSIGGQISFD+FP GWDKT+CL++L +    + EIHFFGDKT++GGNDYEIFESERTIGHTVTCP+DT+KLC ELF ++
Sbjct:  131 VISDYDYVFSENGLIAHKDGKHIGTQSLKSFLGEDKLKELINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSHEERNEFEQYDKVHNVRQKMVAILREKFAHLNLTFSIGGQISFDVFPNGWDKTYCLRYLDD----FQEIHFFGDKTYKGGNDYEIFESERTIGHTVTCPDDTLKLCTELFLRN 317
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BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A2P6SGY2_ROSCH (Phosphomannomutase n=3 Tax=Rosoideae TaxID=171638 RepID=A0A2P6SGY2_ROSCH)

HSP 1 Score: 283 bits (723), Expect = 2.200e-91
Identity = 124/189 (65.61%), Postives = 160/189 (84.66%), Query Frame = 1 
Query:    4 VMDDYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELFF 570
            VM DYDY FS+NGLVA+K GKLIGT+++  H+G+D +K+ IN+ L Y++ +DIP+KRGTFIEFR+GM+N+SP+GRNCSQEERD FE+YDKVH +R  M++ +R +F+  NLTFSIGGQISFD+FP GWDKT+CL++L     E+ EIHFFGDKT+EGGND+EI+ESERT+GHTVT P DT++ CK LFF
Sbjct:   61 VMGDYDYVFSENGLVAHKDGKLIGTQSLKSHLGDDKIKEFINFTLHYIADLDIPIKRGTFIEFRSGMINVSPIGRNCSQEERDEFERYDKVHNVRPKMISILREKFAHFNLTFSIGGQISFDVFPQGWDKTYCLRYL----EEFQEIHFFGDKTYEGGNDHEIYESERTVGHTVTSPEDTVEQCKALFF 245
[Close]
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A1S3Y8J6_TOBAC (Phosphomannomutase n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3Y8J6_TOBAC)

HSP 1 Score: 281 bits (718), Expect = 2.230e-91
Identity = 127/189 (67.20%), Postives = 160/189 (84.66%), Query Frame = 1 
Query:    1 AVMDDYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELF 567
            AV  DYDY FS+NGLVA+K GKLIGT+++   +G++ +K+ IN+ L Y++ +DIP+KRGTFIEFR+GMLN+SP+GRNCSQEERD FE+YDKV KIRETMV  +R +F+ LNLTFSIGGQISFD+FP GWDKT+CL++L E    ++EIHFFGDKT++GGNDYEIFESERT+GHTVT P DT++ C  LF
Sbjct:    4 AVTKDYDYCFSENGLVAHKDGKLIGTQSLKSFLGDEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVQKIRETMVTVLRQKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDE----FNEIHFFGDKTYKGGNDYEIFESERTVGHTVTSPEDTVEQCSILF 188
[Close]
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A388K339_CHABU (Phosphomannomutase n=2 Tax=Chara braunii TaxID=69332 RepID=A0A388K339_CHABU)

HSP 1 Score: 281 bits (720), Expect = 6.260e-91
Identity = 121/185 (65.41%), Postives = 161/185 (87.03%), Query Frame = 1 
Query:   13 DYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELF 567
            DYDY F++NGLVA+K GK IG++++  H+G+D +K++IN+VL Y++ +DIP+KRGTF+EFRTGM+N+SP+GRNCS+EER+AFE+YDKVHK+RE MV+ ++ +F+ LNLT+SIGGQISFD+FP GWDKT+CLQFL +   ++ EIHFFGDKT++GGNDYEIF S RT+GH+VTCP DT K C ELF
Sbjct:   62 DYDYVFAENGLVAFKDGKQIGSQSLKTHIGDDQLKELINFVLHYIANLDIPIKRGTFVEFRTGMINVSPIGRNCSREERNAFEEYDKVHKVREKMVSVLKEKFAPLNLTYSIGGQISFDVFPNGWDKTYCLQFLDK---DFPEIHFFGDKTYKGGNDYEIFSSPRTVGHSVTCPQDTKKACTELF 243
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BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A7S2N171_9STRA (Phosphomannomutase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N171_9STRA)

HSP 1 Score: 282 bits (721), Expect = 7.310e-91
Identity = 128/184 (69.57%), Postives = 159/184 (86.41%), Query Frame = 1 
Query:   16 YDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELF 567
            + Y+FSQNGLVAYK G+L+  +TIS  +GEDN+KKI+NWV+KYL+ VDIPVKRGTFIEFR+GM+NISPVGRNCS+EER+ +E++D  H IR+ MV  M+ EF+DLNLT+SIGGQISFD+FPTGWDKT+CLQF+   K ++DE+HFFGDKTFEGGND+EIF  ERT+GHTVT P+DT + C ELF
Sbjct:   80 FPYNFSQNGLVAYKDGELMEVQTISKFLGEDNIKKIVNWVMKYLAEVDIPVKRGTFIEFRSGMMNISPVGRNCSREERNDYEKFDLEHNIRKNMVEAMKKEFADLNLTYSIGGQISFDVFPTGWDKTYCLQFIK--KEDFDEVHFFGDKTFEGGNDFEIFSHERTVGHTVTSPDDTKEQCTELF 261
[Close]
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A7S2XTA7_9STRA (Phosphomannomutase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTA7_9STRA)

HSP 1 Score: 281 bits (719), Expect = 9.810e-91
Identity = 127/184 (69.02%), Postives = 158/184 (85.87%), Query Frame = 1 
Query:   16 YDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELF 567
            + Y+FSQNGLVAYK+G+L+  +TIS H+GEDN+K+++NWV+KYL+ VD+P+KRGTFIEFR+GM NISP+GRNCS+EER+ +E +D  + IR+ MVA M+ EF+DLNLTFSIGGQISFD+FP GWDKT+CL FL  G  ++DEIHFFGDKTFEGGNDYEIF SERTIGHTVT P DT + C +LF
Sbjct:   68 FPYNFSQNGLVAYKSGELLEIQTISKHLGEDNVKRLVNWVMKYLADVDLPIKRGTFIEFRSGMFNISPIGRNCSREERNDYETFDLANNIRKNMVAAMQTEFADLNLTFSIGGQISFDVFPKGWDKTYCLNFLDAG--DFDEIHFFGDKTFEGGNDYEIFSSERTIGHTVTSPADTKEQCTKLF 249
[Close]
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Match: A0A7S2RZA9_9STRA (Phosphomannomutase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZA9_9STRA)

HSP 1 Score: 281 bits (720), Expect = 1.040e-90
Identity = 128/189 (67.72%), Postives = 157/189 (83.07%), Query Frame = 1 
Query:    4 VMDDYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGVDIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAKMRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFGDKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELFF 570
            V+D +DY FS+NGLVAYK G+LIG ++I+  +GE ++++++NW L YLS +++PVKRGTFIEFR GMLNISP+GRNCSQ ERDAFEQYDK   +R  MV  MR EF+DLNLTFSIGGQISFD+FP GWDK +CLQF+     +YDEIHFFGDKTFEGGND+EIFE ERTIGHT T P  T+++C+ELFF
Sbjct:   77 VLDKFDYCFSENGLVAYKHGELIGQQSIAKFLGEKDLQRVLNWTLAYLSKIELPVKRGTFIEFRAGMLNISPIGRNCSQSERDAFEQYDKDAGVRPAMVEAMRQEFADLNLTFSIGGQISFDVFPQGWDKRYCLQFV---LGDYDEIHFFGDKTFEGGNDFEIFEDERTIGHTTTGPEHTMQMCRELFF 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14277.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A0RTZ6_SACJA1.090e-12289.06Phosphomannomutase n=2 Tax=Phaeophyceae TaxID=2870... [more]
UPI0009C0FA5A2.220e-9466.67phosphomannomutase isoform X2 n=1 Tax=Amborella tr... [more]
A0A7S1Y4G5_9STRA1.740e-9371.20Phosphomannomutase n=2 Tax=Grammatophora oceanica ... [more]
W1NI90_AMBTC4.570e-9266.49Phosphomannomutase n=3 Tax=Magnoliopsida TaxID=339... [more]
A0A2P6SGY2_ROSCH2.200e-9165.61Phosphomannomutase n=3 Tax=Rosoideae TaxID=171638 ... [more]
A0A1S3Y8J6_TOBAC2.230e-9167.20Phosphomannomutase n=1 Tax=Nicotiana tabacum TaxID... [more]
A0A388K339_CHABU6.260e-9165.41Phosphomannomutase n=2 Tax=Chara braunii TaxID=693... [more]
A0A7S2N171_9STRA7.310e-9169.57Phosphomannomutase n=1 Tax=Helicotheca tamesis Tax... [more]
A0A7S2XTA7_9STRA9.810e-9169.02Phosphomannomutase n=1 Tax=Attheya septentrionalis... [more]
A0A7S2RZA9_9STRA1.040e-9067.72Phosphomannomutase n=1 Tax=Rhizochromulina marina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14277contigH-elongata_contig14277:4741..7602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.8
Seed ortholog evalue3.2e-93
Seed eggNOG ortholog2880.D7FWW3
Preferred namePMM
KEGG rclassRC00408
KEGG koko:K07541,ko:K17497
KEGG ReactionR01818,R05919
KEGG Pathwayko00051,ko00520,ko00563,ko01100,ko01110,ko01130,map00051,map00520,map00563,map01100,map01110,map01130
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0004615,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006013,GO:0006082,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006605,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006970,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009110,GO:0009225,GO:0009226,GO:0009298,GO:0009628,GO:0009651,GO:0009987,GO:0010494,GO:0015031,GO:0015833,GO:0016051,GO:0016053,GO:0016853,GO:0016866,GO:0016868,GO:0018130,GO:0019318,GO:0019438,GO:0019538,GO:0019673,GO:0019752,GO:0019852,GO:0019853,GO:0031012,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036211,GO:0036464,GO:0042364,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045047,GO:0045184,GO:0046364,GO:0046394,GO:0046483,GO:0046907,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0055086,GO:0062039,GO:0062040,GO:0070085,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.phosphomannomutase activity
EggNOG OGsCOG0561@1,KOG3189@2759
EC5.4.2.8
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHAD domain protein
Ec32 orthologEc-08_004630.1
Exons7
Model size1080
Cds size573
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.4225175-UTR-H-elongata_contig14277:4740..47891622929847.4225175-UTR-H-elongata_contig14277:4740..4789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14277 4741..4789 -
1691679181.6781526-UTR-H-elongata_contig14277:4740..47891691679181.6781526-UTR-H-elongata_contig14277:4740..4789Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14277 4741..4789 -
1622929847.4768462-UTR-H-elongata_contig14277:4808..52601622929847.4768462-UTR-H-elongata_contig14277:4808..5260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14277 4809..5260 -
1691679181.6898072-UTR-H-elongata_contig14277:4808..52601691679181.6898072-UTR-H-elongata_contig14277:4808..5260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14277 4809..5260 -
1622929847.5875425-UTR-H-elongata_contig14277:7596..76021622929847.5875425-UTR-H-elongata_contig14277:7596..7602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14277 7597..7602 -
1691679181.7683294-UTR-H-elongata_contig14277:7596..76021691679181.7683294-UTR-H-elongata_contig14277:7596..7602Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14277 7597..7602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.4926336-CDS-H-elongata_contig14277:5260..53681622929847.4926336-CDS-H-elongata_contig14277:5260..5368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 5261..5368 -
1691679181.7065272-CDS-H-elongata_contig14277:5260..53681691679181.7065272-CDS-H-elongata_contig14277:5260..5368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 5261..5368 -
1622929847.5097938-CDS-H-elongata_contig14277:5762..58521622929847.5097938-CDS-H-elongata_contig14277:5762..5852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 5763..5852 -
1691679181.716514-CDS-H-elongata_contig14277:5762..58521691679181.716514-CDS-H-elongata_contig14277:5762..5852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 5763..5852 -
1622929847.5270088-CDS-H-elongata_contig14277:6080..61881622929847.5270088-CDS-H-elongata_contig14277:6080..6188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 6081..6188 -
1691679181.7259095-CDS-H-elongata_contig14277:6080..61881691679181.7259095-CDS-H-elongata_contig14277:6080..6188Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 6081..6188 -
1622929847.5430028-CDS-H-elongata_contig14277:6710..68101622929847.5430028-CDS-H-elongata_contig14277:6710..6810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 6711..6810 -
1691679181.7336204-CDS-H-elongata_contig14277:6710..68101691679181.7336204-CDS-H-elongata_contig14277:6710..6810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 6711..6810 -
1622929847.5582085-CDS-H-elongata_contig14277:7059..71511622929847.5582085-CDS-H-elongata_contig14277:7059..7151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 7060..7151 -
1691679181.7455401-CDS-H-elongata_contig14277:7059..71511691679181.7455401-CDS-H-elongata_contig14277:7059..7151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 7060..7151 -
1622929847.5729418-CDS-H-elongata_contig14277:7521..75961622929847.5729418-CDS-H-elongata_contig14277:7521..7596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 7522..7596 -
1691679181.7598133-CDS-H-elongata_contig14277:7521..75961691679181.7598133-CDS-H-elongata_contig14277:7521..7596Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14277 7522..7596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14277.2958.1prot_H-elongata_contig14277.2958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14277 5261..7596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14277.2958.1

>prot_H-elongata_contig14277.2958.1 ID=prot_H-elongata_contig14277.2958.1|Name=mRNA_H-elongata_contig14277.2958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MDDYDYSFSQNGLVAYKAGKLIGTKTISDHVGEDNMKKIINWVLKYLSGV
DIPVKRGTFIEFRTGMLNISPVGRNCSQEERDAFEQYDKVHKIRETMVAK
MRGEFSDLNLTFSIGGQISFDLFPTGWDKTFCLQFLGEGKAEYDEIHFFG
DKTFEGGNDYEIFESERTIGHTVTCPNDTIKLCKELFFKD*
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mRNA from alignment at H-elongata_contig14277:4741..7602-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14277.2958.1 ID=mRNA_H-elongata_contig14277.2958.1|Name=mRNA_H-elongata_contig14277.2958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2862bp|location=Sequence derived from alignment at H-elongata_contig14277:4741..7602- (Himanthalia elongata Himel1 dioecious)
GCAGTGATGGACGACTACGATTACAGCTTTTCCCAAAACGGCCTCGTCGC
GTACAAGGCGGGAAAGCTTATCGGCACGAAGGTTAATATTAAAACAACTC
CTTGCTGTTGCCCGCCGGCGTTCACAATTATACAGTATAGACTGGATAAA
AATTATATGAAAAATGATTTAAAAACAAAAAAATTACAAGCAAAATTCCC
AATACTGAACTCGATAATAAAACGGCGATGTTGGCGGAAACGATGTTGTA
TCAGTTGCTTTCCTACGAAGAAAGACTGCTACATCCCCCTTCATGATTCT
AACCGAAAGACGCCTCAATAGCCGCCCGTGTCTGCTTGTTGAACCCCCGA
CAAACCTTCCTGTGCCAGTGCGAGTGAGTGTGTGTGTGCGCTTACCATCA
GTGGCGTTTTCTTACAATGCGTGTCTATTCCCCTTTTGTCGCCAAATGTA
GACCATCTCTGACCACGTTGGCGAGGATAACATGAAGAAAATCATCAACT
GGGTATTGAAATACCTTTCGGGAGTTGATATTCCGGTCAAGAGGTAAGAT
TCAGTAAAACAACGATAGTAACGGGTGGGGTAAACGTAGGCTCCCAACGT
CATCGAGAAGGATAACAGCGACACATGATGGCCAAAGCATATCGTGTGTG
CTTGAGCTAGCGAATTCTCGCCTAGCACAAAACGTCTTTAAGCTTGTTCC
TTTCATCGAAGATAAAAAAAAAATATGCTGGATAAGGAGGGAAGGAAATG
ACGCTCACGATTTTAATAACGCCTCATTCCCCTCCGTACCAGGGGTACGT
TCATCGAGTTTAGGACGGGAATGCTCAACATTTCGCCGGTAGGAAGGAAC
TGCAGCCAAGAAGAGAGAGACGCCTTCGAGCAGTACGACAAGGTTAGTCG
GTGGGTCTGTCGGTCGTTCCGCAGAGAAATTTTCAGTAGTTGGAACGTGT
CTCCAATACGTCGCAGCGCTTGCGCCCTGATCAGAGAGGTGAGCGTTCTG
TACATGCTATCCCGCTGATCACTATCGCTTATAGCCCGCTGGGGGGTTGG
TATCGCGTACATCAGGTGGGTGCCGAGGCGGCCTTTTCCCGATCTATGTA
AGCGATAGTGATCAGGGTTCACAGGAACATCTGAATATTGAGGTCCGCAG
AGCCGCGTGATTGGGAGTTGGAGGCCACAGCCTCATCCGCGCGTTTGGAC
GAGTGGTTAGCACTGAAATACGCATTTTTCTCGTAAAACCTGTCATGACC
CCTTGTTGAATAAACTGCAAGCTGGACCATTTACAACTTCTCCCCCCCCC
TCGACCCTGGTATAATATAATATACACTCTAAAAAACACACGTTTCATTT
CTTTTAAAAGTGTGCATGGACCGTGCGACCTGGACACACGCCTGCGGAAT
GCTTTCCTCCTTAGGTGCACAAGATTCGAGAGACTATGGTGGCCAAGATG
AGGGGAGAGTTTTCGGACTTGAACCTCACCTTTTCCATTGGCGGACAAAT
CTCCTTCGACTTGTTCCCCACCGTAAGAACGATTGATCGATCGCGTCGCG
TTGCGGATTTTATATCCCCGTTGTGATTCGTGACTATAAACTTCAAAAAT
ATAGAAAATATTTGTCTTGACTCTGACTCAAGTTTTAAAACTACAACTAC
TTTTTGTTTAGTTTGATAATAGGGTGGGCATTAATTGATCCTCCTGCAGC
ATAAGGGGTTTTGTCGTTTGACCTGGATGTGTTGTTGCTTCGCGAGGCAG
GGGTGGGACAAGACGTTCTGCCTTCAGTTTTTGGGCGAGGGAAAGGCGGA
ATACGACGAGATCCACTTTTTCGGGGACAAGACCTTTGAGGTGCTTACAA
TTAAACGTAACGATATTGTTCAAATTAATTACTCCCGATACCGCAAATAA
TTCTCCCCGCAGTCTAGACGGTAATCTCTTGGCGCGGTGGAAATATCGAT
GAGATATATGAGGTTACATAATCGCACACGCATCTTGAACCCCCGCACTG
AAGCTACAGCTTAGAACTCTGGAGAACATATACGCGTAACGTTTATATCT
CTTTAAAGGAAGACGAGAGTTTTCGAGCCTTCCCGCCAGCTGTCGTCCTC
GTACTGTAGTTGGCGGCGATATAGCAAGGTTCTGAAATATGTAGACATAA
ATGAAAGACCATAATCAACCGGTCGATCTTATAGCTATATATAAGGCATG
TAAAACTGAACTGCGCCCCGTGCCCCCTTTCCAGGGAGGAAACGACTACG
AAATCTTCGAGTCGGAGCGTACGATTGGCCACACCGTGACCTGCCCCAAC
GATACCATTAAGCTGTGCAAGGAGCTCTTCTTCAAGGACTAACTAGAAAA
CATACGATAAAAAAAAATGTCGTTTTTTTTTCTGCTTCTACTTGAAACTG
GTTGAATTGTCATCCTTCATAGTGAAAGCAATCTCTAATTATTTTTGCTC
GTGGCTTCTGGGGTTTCTGGTGCTACCCGACGAAGAATAGTCTCCGCTTT
TGCTTGTTCGCGAGTCTAGAGTTTTTTTGACGTAAAATTACTTGTCGGGA
AAAGGAAAAGCACGTTCGGTGACAGCGCCTGTCGACAAGGGATTATTACC
TTCCCGAACGTCATCACCACTGTTCCACAAAGATATAGAAAGACTTACGC
CTCAATCACCCCCGTTGGGTTGTCACGGGGAGGAGCTGTGCTGGGTTGTG
TTGTCACGCGCAATTGAAGTAAGTTTGTGAAAGCTCGAGTAACGATTTTG
TCTTCTCGTGTTATTTGTCAACGGCAGCCTCCTTGTCAACGGCAGCCTCC
TTGTCAACGGCAGCCTCCTTCCTCGGGAGTGTTATGGGTAATTGATGGCA
GATGGAAAAATC
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Coding sequence (CDS) from alignment at H-elongata_contig14277:4741..7602-

>mRNA_H-elongata_contig14277.2958.1 ID=mRNA_H-elongata_contig14277.2958.1|Name=mRNA_H-elongata_contig14277.2958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig14277:4741..7602- (Himanthalia elongata Himel1 dioecious)
ATGGACGACTACGATTACAGCTTTTCCCAAAACGGCCTCGTCGCGTACAA
GGCGGGAAAGCTTATCGGCACGAAGATGGACGACTACGATTACAGCTTTT
CCCAAAACGGCCTCGTCGCGTACAAGGCGGGAAAGCTTATCGGCACGAAG
ACCATCTCTGACCACGTTGGCGAGGATAACATGAAGAAAATCATCAACTG
GGTATTGAAATACCTTTCGGGAGTTGATATTCCGGTCAAGAGACCATCTC
TGACCACGTTGGCGAGGATAACATGAAGAAAATCATCAACTGGGTATTGA
AATACCTTTCGGGAGTTGATATTCCGGTCAAGAGGGGTACGTTCATCGAG
TTTAGGACGGGAATGCTCAACATTTCGCCGGTAGGAAGGAACTGCAGCCA
AGAAGAGAGAGACGCCTTCGAGCAGTACGACAAGGGGTACGTTCATCGAG
TTTAGGACGGGAATGCTCAACATTTCGCCGGTAGGAAGGAACTGCAGCCA
AGAAGAGAGAGACGCCTTCGAGCAGTACGACAAGGTGCACAAGATTCGAG
AGACTATGGTGGCCAAGATGAGGGGAGAGTTTTCGGACTTGAACCTCACC
TTTTCCATTGGCGGACAAATCTCCTTCGACTTGTTCCCCACCGTGCACAA
GATTCGAGAGACTATGGTGGCCAAGATGAGGGGAGAGTTTTCGGACTTGA
ACCTCACCTTTTCCATTGGCGGACAAATCTCCTTCGACTTGTTCCCCACC
GGGTGGGACAAGACGTTCTGCCTTCAGTTTTTGGGCGAGGGAAAGGCGGA
ATACGACGAGATCCACTTTTTCGGGGACAAGACCTTTGAGGGGTGGGACA
AGACGTTCTGCCTTCAGTTTTTGGGCGAGGGAAAGGCGGAATACGACGAG
ATCCACTTTTTCGGGGACAAGACCTTTGAGGGAGGAAACGACTACGAAAT
CTTCGAGTCGGAGCGTACGATTGGCCACACCGTGACCTGCCCCAACGATA
CCATTAAGCTGTGCAAGGAGCTCTTCTTCAAGGACTAAGGAGGAAACGAC
TACGAAATCTTCGAGTCGGAGCGTACGATTGGCCACACCGTGACCTGCCC
CAACGATACCATTAAGCTGTGCAAGGAGCTCTTCTTCAAGGACTAA
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