mRNA_H-elongata_contig142766.2957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142766.2957.1
Unique NamemRNA_H-elongata_contig142766.2957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142766.2957.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 6.330e-67
Identity = 130/167 (77.84%), Postives = 147/167 (88.02%), Query Frame = 1 
Query:   49 LGDLTMARRREESLKAELTQATIRLEESGTELGKAQSRADDLAQARAADTESSADRAAREALVRRLDNERQYLKSQLESEITCKDELREALTTATRQLGEIKADWADEQTARTETFQRELQTKAETLSDINAEKVATETELVAATRQLSLLKVGYSKARDNLRAEQS 549
            LGDL+MARRREE+LKAE+     +LE+ GTEL KAQSRADDLA+ARAADTESSADRAAREA+VRRLDNERQYLKSQL++EITCKDELREAL  ATRQLG+IK DWADEQ +RT+ FQ+ELQ K + +SD+NAEKVA E ELVA TRQ+ LLK GYSKARDNLRAEQS
Sbjct: 1137 LGDLSMARRREEALKAEVAVMATKLEDRGTELAKAQSRADDLAEARAADTESSADRAAREAVVRRLDNERQYLKSQLQTEITCKDELREALAKATRQLGDIKVDWADEQASRTDEFQQELQAKTKAMSDLNAEKVAMEAELVAITRQVGLLKEGYSKARDNLRAEQS 1303
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BLAST of mRNA_H-elongata_contig142766.2957.1 vs. uniprot
Match: A0A835YVZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.380e-31
Identity = 83/179 (46.37%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:   13 KIQTLQDQLSDTLGDLTMARRREESLKAELTQATIRLEESGTELGKAQSRADDLAQARAADTESSADRAAREALVRRLDNERQYLKSQLESEITCKDELREALTTATRQLGEIKADWADEQTARTETFQRELQTKAETLSDINAEKVATETELVAATRQLSLLKVGYSKARDNLRAEQS 549
            +I TLQ+QLSD LG + +A+R+EE+ + ++  A  RLEE   ++ +A +RA+    A        A +AA EAL+RRLDNERQYL+SQLE+E+TCK EL+EAL  A RQL E+KA W  EQ    +     L       +D+ A   A   E   A  Q+ LLK GY+KARD LRAEQ+
Sbjct:   12 QITTLQEQLSDALGSVAVAKRKEEAARTDVAAAEQRLEEQAGDVARAVARAEAAEAAAXXXXXXXAGQAASEALLRRLDNERQYLRSQLETELTCKSELQEALDRAARQLAELKATWQREQDKAAQESGDALAALQRERADLAAANAALAAEASTAAHQVELLKSGYAKARDQLRAEQA 190
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BLAST of mRNA_H-elongata_contig142766.2957.1 vs. uniprot
Match: A0A7S2FJA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJA7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.660e-10
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:  199 ESSADRAAREALVRRLDNERQYLKSQLESEITCKDELREALTTATRQLGEIKADWADEQTARTETFQREL------QTKAETLSDINAEKVATETELVAATRQL 492
            E+ A +AA EA++RRLDNER YL+SQL SE+T K+EL+  L  ATR LG++KA  + E+    E F+R+L      + K ET   +    +A ETE+   TRQL
Sbjct:    2 EARAAKAAAEAMLRRLDNERSYLRSQLTSEVTLKNELQVTLDQATRGLGDLKAQASRER----EEFERKLHGDGTERDKIETA--LRNSNLALETEVAEKTRQL 99
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BLAST of mRNA_H-elongata_contig142766.2957.1 vs. uniprot
Match: A0A7S3ZZB9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZB9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-10
Identity = 62/186 (33.33%), Postives = 90/186 (48.39%), Query Frame = 1 
Query:    7 QSKIQTLQDQLSDTLGDLTMARRREESLKAELTQATIRLEESGTEL------GKAQSRADDLAQARAADTESSADRAAREALVRRLDNERQYLKSQLESEITCKDELREALTTATRQLGEIKADWADEQTARTETFQRELQTKAETLSDINAEKVATETELVAATRQLSLLKVGYSKARDNLRAEQ 546
            ++K+ + Q   SD + D   ARRREE +K EL     R E++  EL                             R   +AL+RRL+NE+QYL +QL+SE TCK EL+ AL  A  +L E +A          E+ ++     +    ++ A K   E + VA T+Q+ +LK  Y+K RD LR EQ
Sbjct:  654 ETKLASAQAAYSDAVHDAGAARRREEQIKGEL-----RREKAAKELRXXXXXXXXXXXXXXXXXXXXXXXXEDRQRQEEKALIRRLENEKQYLAAQLKSEATCKGELQSALDKAEERLVETEAQGHKALQNSLESVRKSADRASAAEKELRAVKTEKEAQDVALTKQIEMLKDAYTKTRDALRIEQ 834
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BLAST of mRNA_H-elongata_contig142766.2957.1 vs. uniprot
Match: A0A7S3M992_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M992_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.420e-7
Identity = 42/122 (34.43%), Postives = 61/122 (50.00%), Query Frame = 1 
Query:  226 EALVRRLDNERQYLKSQLESEITCKDELREALTTATRQLGEIKADWADEQTARTETFQRELQTKAETLSDINAEKVAT---------------ETELVAATRQLSLLKVGYSKARDNLRAEQ 546
            +A++RRLDNERQYLKSQL SE+T K EL+ A +   +QL +++  W ++                ETL D+N +   T               ++E+     Q   LK G+ K RD +R EQ
Sbjct:   45 DAVIRRLDNERQYLKSQLASEVTHKSELQAAFSQCQQQLNDVQKQWKND---------------VETLKDLNIQATHTFADKEQKYLQLQSQLDSEVKRCQTQNRELKEGFMKMRDQVRMEQ 151
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BLAST of mRNA_H-elongata_contig142766.2957.1 vs. uniprot
Match: A0A1W0A416_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A416_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.380e-6
Identity = 60/187 (32.09%), Postives = 96/187 (51.34%), Query Frame = 1 
Query:    7 QSKIQTLQDQLSDTLGDLTMARRREESLKA---ELTQATIRLEESGTELGKAQSRADDLAQARAADTESSADRAAR---EALVRRLDNERQYLKSQLESEITCKDELREALTTATRQLGEIKADWADEQTARTETFQRELQTKAETLSDINAEKVATETELVAATRQLSLLKVGYSKARDNLRAEQS 549
            QSK+  LQ  ++D + DL+ AR +E++ K    ++ +   RL +   EL  +     +        T+SS D A R   EA +RRL +ERQYLKSQ+E E  CKDEL+  L   T QL + + +   E +A  ++ + +  T    ++ +    V T  EL +   Q +  K+   KAR+   A+Q+
Sbjct:  783 QSKVVQLQANITDLVSDLSAARNKEDNAKLSTEKMAEENARLYKRIAELELSNEELTETING----TKSSLDDANRANLEATLRRLTHERQYLKSQMEGEARCKDELQLRLQEITAQLQDSQNNAKTELSAFKQSSKDKEITLQAQIAKLEECNVLTVGELSSVKHQWNEAKLALYKARERNDADQT 965
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142766.2957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LMX2_ECTSI6.330e-6777.84Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YVZ6_9STRA6.380e-3146.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2FJA7_9STRA3.660e-1046.15Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3ZZB9_9STRA4.900e-1033.33Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3M992_9STRA1.420e-734.43Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1W0A416_9STRA3.380e-632.09Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142766contigH-elongata_contig142766:117..1437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue2.2e-59
Seed eggNOG ortholog2880.D8LMX2
EggNOG OGs28KYD@1,2QTF4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size549
Cds size549
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142766.2957.1prot_H-elongata_contig142766.2957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142766 117..1437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.2497325-CDS-H-elongata_contig142766:116..2151622929847.2497325-CDS-H-elongata_contig142766:116..215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 117..215 -
1691679181.6370468-CDS-H-elongata_contig142766:116..2151691679181.6370468-CDS-H-elongata_contig142766:116..215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 117..215 -
1622929847.2677197-CDS-H-elongata_contig142766:404..5001622929847.2677197-CDS-H-elongata_contig142766:404..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 405..500 -
1691679181.6490247-CDS-H-elongata_contig142766:404..5001691679181.6490247-CDS-H-elongata_contig142766:404..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 405..500 -
1622929847.2836626-CDS-H-elongata_contig142766:726..9241622929847.2836626-CDS-H-elongata_contig142766:726..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 727..924 -
1691679181.6585042-CDS-H-elongata_contig142766:726..9241691679181.6585042-CDS-H-elongata_contig142766:726..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 727..924 -
1622929847.3003929-CDS-H-elongata_contig142766:1281..14371622929847.3003929-CDS-H-elongata_contig142766:1281..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 1282..1437 -
1691679181.6678126-CDS-H-elongata_contig142766:1281..14371691679181.6678126-CDS-H-elongata_contig142766:1281..1437Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142766 1282..1437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142766.2957.1

>prot_H-elongata_contig142766.2957.1 ID=prot_H-elongata_contig142766.2957.1|Name=mRNA_H-elongata_contig142766.2957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp
RAQSKIQTLQDQLSDTLGDLTMARRREESLKAELTQATIRLEESGTELGK
AQSRADDLAQARAADTESSADRAAREALVRRLDNERQYLKSQLESEITCK
DELREALTTATRQLGEIKADWADEQTARTETFQRELQTKAETLSDINAEK
VATETELVAATRQLSLLKVGYSKARDNLRAEQS
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mRNA from alignment at H-elongata_contig142766:117..1437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142766.2957.1 ID=mRNA_H-elongata_contig142766.2957.1|Name=mRNA_H-elongata_contig142766.2957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1321bp|location=Sequence derived from alignment at H-elongata_contig142766:117..1437- (Himanthalia elongata Himel1 dioecious)
AGGGCTCAATCCAAGATACAGACCCTGCAGGATCAGCTCAGCGACACTCT
GGGGGACCTTACGATGGCGAGGAGAAGAGAAGAGTCTCTGAAGGCGGAGT
TGACCCAGGCGACAATCAGGCTCGAAGAAAGTGGGACGGAGCTGGGAAAG
GCCCAGGTTAGTGCGCATTATTTTGCCACTCATTATCACTCGAGGCTTTG
TAGTCGCACTTGGTTTAGACGCTGTAAGCACGAGAAGATCAGATGCCGCT
TGCGATGACAAGAAAGTGCCATATGTTTATCGTGATAAAATACACCCACA
CAGAGCACTCTACTCCGGGTCAAAATCTATATATCATACATGGGAAAGGC
AGATCGATCCCTAGGCCTTTACCACTGGTGTCCGTGTATTTTGCCTTCTC
TCGCGCTGTCTCATTACGCCCCGGAAACTGCTAACGGCCAACGACTAACA
ACCGGCTGTCTTCCTTGGCAACGGTAAAAACAACGACATCTTCACATAAA
ATATTAACGGCAGTCGAGAGCTGACGACCTCGCCCAGGCCCGAGCAGCGG
ACACGGAATCCTCCGCCGACCGTGCGGCACGCGAGGCTTTGGTACGGCGT
TTAGACAACGAGCGGCAGTACTTAAAGAGCCAGCTTGAGTCAGAGATAAC
GTGCAAGGACGAGCTCAGAGAGGCCCTCACAACCGCGACCCGTCAGCTGG
GAGAGATCAAGGTGCGACAATGTACCGACGACATCGTGCAAATCGATATT
AAACTCTAGAGAACGATAAGGAGAGGAGGTGAGTTTCCAGAATATATATA
TGTTCCGTGCTGATGTATGGGTCCACAGGCATGTCGTAGTCCCCACCGAG
CCCGGGTAATTGGTTTACTTGCGCTCGGCTGTTGGGAAGCTGTCACACGC
GTGGCGACGCTGTTTCTTATGATCTGACGCGTCCTAGGCGGACTGGGCAG
ATGAGCAGACAGCGAGGACAGAAACGTTCCAGCGGGAATTGCAGACCAAG
GCTGAAACTTTGAGCGACATCAACGCAGAAAAGGTGTGCGAGTGTAAAGA
CTATAATAATGCGTTACACCGGCGTACTGCGAGCGAGCGTTTGGTTTTTC
TGTGAGGTACTGTGATTAAATAAGTTGACGTTTTACAGAGCCCCGCACGA
AGGACGCATTTATTGTGAACAGTCATTGTGGATCGTTTCACCCCGATTTT
CTACCTTCACGCGGTGAATCAGGTAGCCACAGAAACGGAGCTCGTGGCAG
CTACCAGGCAGCTGAGTCTCCTCAAAGTAGGATACTCCAAGGCCAGGGAT
AACCTCAGAGCGGAACAATCG
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Coding sequence (CDS) from alignment at H-elongata_contig142766:117..1437-

>mRNA_H-elongata_contig142766.2957.1 ID=mRNA_H-elongata_contig142766.2957.1|Name=mRNA_H-elongata_contig142766.2957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig142766:117..1437- (Himanthalia elongata Himel1 dioecious)
AGGGCTCAATCCAAGATACAGACCCTGCAGGATCAGCTCAGCGACACTCT
GGGGGACCTTACGATGGCGAGGAGAAGAGAAGAGTCTCTGAAGGCGGAGT
TGACCCAGGCGACAATCAGGCTCGAAGAAAGTGGGACGGAGCTGGGAAAG
GCCCAGAGGGCTCAATCCAAGATACAGACCCTGCAGGATCAGCTCAGCGA
CACTCTGGGGGACCTTACGATGGCGAGGAGAAGAGAAGAGTCTCTGAAGG
CGGAGTTGACCCAGGCGACAATCAGGCTCGAAGAAAGTGGGACGGAGCTG
GGAAAGGCCCAGTCGAGAGCTGACGACCTCGCCCAGGCCCGAGCAGCGGA
CACGGAATCCTCCGCCGACCGTGCGGCACGCGAGGCTTTGGTACGGCGTT
TAGACAACGAGCGGCAGTACTTAAAGAGCCAGCTTGAGTCAGAGATAACG
TGCAAGGACGAGCTCAGAGAGGCCCTCACAACCGCGACCCGTCAGCTGGG
AGAGATCAAGTCGAGAGCTGACGACCTCGCCCAGGCCCGAGCAGCGGACA
CGGAATCCTCCGCCGACCGTGCGGCACGCGAGGCTTTGGTACGGCGTTTA
GACAACGAGCGGCAGTACTTAAAGAGCCAGCTTGAGTCAGAGATAACGTG
CAAGGACGAGCTCAGAGAGGCCCTCACAACCGCGACCCGTCAGCTGGGAG
AGATCAAGGCGGACTGGGCAGATGAGCAGACAGCGAGGACAGAAACGTTC
CAGCGGGAATTGCAGACCAAGGCTGAAACTTTGAGCGACATCAACGCAGA
AAAGGCGGACTGGGCAGATGAGCAGACAGCGAGGACAGAAACGTTCCAGC
GGGAATTGCAGACCAAGGCTGAAACTTTGAGCGACATCAACGCAGAAAAG
GTAGCCACAGAAACGGAGCTCGTGGCAGCTACCAGGCAGCTGAGTCTCCT
CAAAGTAGGATACTCCAAGGCCAGGGATAACCTCAGAGCGGAACAATCGG
TAGCCACAGAAACGGAGCTCGTGGCAGCTACCAGGCAGCTGAGTCTCCTC
AAAGTAGGATACTCCAAGGCCAGGGATAACCTCAGAGCGGAACAATCG
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