mRNA_H-elongata_contig142711.2956.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142711.2956.1
Unique NamemRNA_H-elongata_contig142711.2956.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: B3VMZ7_FUCSE (Heat shock protein 70 (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ7_FUCSE)

HSP 1 Score: 162 bits (409), Expect = 2.500e-45
Identity = 90/108 (83.33%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKMA--GAGGMPXXXXXXXXDMGGAGFPGAGTPAPEADADAGPKIEEID 318
            MRNTI EEKVASQLDAADKS+IESKISETIAWLD NQNAEKEEYEEKQK+LE VCTPIIQKMA  G GGMP        DMGGAGFPGAG P PEADADAGPKIEEID
Sbjct:  407 MRNTINEEKVASQLDAADKSAIESKISETIAWLDTNQNAEKEEYEEKQKELEGVCTPIIQKMAAAGGGGMPGGMGGMP-DMGGAGFPGAGAPTPEADADAGPKIEEID 513
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A6H5JJT8_9PHAE (HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.170e-37
Identity = 87/109 (79.82%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKMAGAGGMPXXXXXXXX--DMGGAGFPGAGT-PAPEADADAGPKIEEID 318
            MRNTI EEKV++QLD ADK +IE+KISETIAWLDANQNAEKEEYEEKQK+LE VC PIIQKMAG  G  XXXXXXXX  DMGGAGFP  G  PAP+A+ADAGPKIEEID
Sbjct:  552 MRNTINEEKVSAQLDEADKKTIETKISETIAWLDANQNAEKEEYEEKQKELEGVCNPIIQKMAGGAGXXXXXXXXXXXXDMGGAGFPAGGAAPAPDAEADAGPKIEEID 660
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A6H5KQY2_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 5.030e-30
Identity = 86/121 (71.07%), Postives = 94/121 (77.69%), Query Frame = 1 
Query:    1 MRNTIYEEK---------VASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKMAG-AGGMPXXXXXXXX----DMGGAGFPGAGTPAPE-ADADAGPKIEEID 318
            MRNTI +EK         VAS+LDAADK++IE+KISETIAWLD NQ+AEKEEYEEKQK+LE+VC PIIQKMAG AGGMPXXXXXXXX    DMGGAGF          ADADAGPKIEEID
Sbjct:  616 MRNTINDEKAGRRVVPVKVASKLDAADKTTIETKISETIAWLDGNQSAEKEEYEEKQKELEAVCNPIIQKMAGGAGGMPXXXXXXXXXXXXDMGGAGFXXXXXXXXXXADADAGPKIEEID 736
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A485KCI7_9STRA (Aste57867_4298 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCI7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.300e-23
Identity = 64/107 (59.81%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKM-AGAGGMPXXXXXXXXDMGGAGFPGAGTPAPEADADAGPKIEEID 318
            +RNT+ +EK+  ++D +DK +I+ K++ETI WLDANQ+AEKEEYE KQK+LE +  PI+QK+ A AGG PXXXXXXXXDMGGAG P      P A    GPKIEE+D
Sbjct:  237 LRNTLNDEKLQGKIDESDKKAIDDKVTETINWLDANQSAEKEEYEAKQKELEGIANPIMQKLYASAGGAPXXXXXXXXDMGGAGAP------PPASHAQGPKIEEVD 337
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A7R9VQI5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQI5_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 7.880e-23
Identity = 59/107 (55.14%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKM-AGAGGMPXXXXXXXXDMGGAGFPGAGTPAPEADADAGPKIEEID 318
            MRNTI EEKVA+QL + DK  IE  + ET+AWL+ANQ AE EE+E KQKDLE +C PII KM  GAGG P        DMGGAG               GPKIEE+D
Sbjct:   71 MRNTIREEKVAAQLSSEDKEKIEKAVDETVAWLEANQLAEVEEFEHKQKDLEGICNPIITKMYQGAGGAPGGMP----DMGGAGX----XXPXXXXXXGGPKIEEVD 169
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A3R6YRE6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6YRE6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.180e-23
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKMAGAGGMPXXXXXXXXDMGGAGFP--GAGTPAPEADADAGPKIEEID 318
            +RNT+ +EK+  +LD +DK +I+ K++ETI WLDANQ+AEKEE+E KQK+LE V  PI+QK+  AGG P          G  G P  GAG   P A +  GPKIEE+D
Sbjct:  101 LRNTLNDEKLQGKLDESDKKAIDDKVTETINWLDANQSAEKEEFEAKQKELEGVANPIMQKLYAAGGAPG---------GPGGMPDFGAGGAPPPASSAQGPKIEEVD 199
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: H6WB83_VAULI (Heat shock protein 70 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB83_VAULI)

HSP 1 Score: 101 bits (251), Expect = 9.860e-23
Identity = 67/111 (60.36%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKMAG-AGGMPXXXXXXXX----DMGGAGFPGAGTPAPEADADAGPKIEEID 318
            +RNT+   ++  ++D +DKSS++SKI++TI WL++NQNAEKEEY+EKQK+LE+V  PI+QKMAG AGGM XXXXXXXX    DMGGA    +G+  P ADA A P+IEEID
Sbjct:  552 LRNTLNGPEIGDKMDPSDKSSLDSKINDTINWLESNQNAEKEEYQEKQKELENVANPILQKMAGGAGGMXXXXXXXXXXXXXDMGGA---SSGSSMPTADASAEPRIEEID 659
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BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A6T7KQV5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7KQV5_9EUKA)

HSP 1 Score: 92.0 bits (227), Expect = 4.040e-22
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKMAG---AGGMPXXXXXXXXDMGGAGFPGAGTPAPEADADAGPKIEEID 318
            ++N+I +EK+A ++ A DK+ +   ++ T  W+D+NQ AEKEE+EEKQK LE++  PI+Q ++G   AG  P             GFPGA  P P ADAD GPKIEEID
Sbjct:    4 IKNSINDEKLADKVSAEDKAKVLDAVNTTTQWMDSNQQAEKEEFEEKQKALEAIVLPILQNLSGGADAGAAPG------------GFPGAAGPGPAADADEGPKIEEID 100
[Close]
BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A314UTT1_PRUYE (Heat shock 70 kDa protein n=3 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314UTT1_PRUYE)

HSP 1 Score: 92.0 bits (227), Expect = 4.040e-22
Identity = 57/108 (52.78%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKM-AGAGGMPXXXXXXXXDMGGAGFPGAGTP-APEADADAGPKIEEID 318
            MRNT+ +EK A +LD A+K  IE  I E + WLD NQ AE EE+E+KQK+LE +C PII KM  GAGG           MGGA  PG G   A  A ++AGPKIEE+D
Sbjct:    1 MRNTVKDEKFAGKLDPANKRKIEKAIDEAVEWLDRNQLAEVEEFEDKQKELEGLCNPIIAKMYQGAGG--------DVPMGGAQMPGGGFGNASSAGSEAGPKIEEVD 100
[Close]
BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Match: A0A8D1WQ66_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1WQ66_PIG)

HSP 1 Score: 92.0 bits (227), Expect = 8.490e-22
Identity = 57/107 (53.27%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    1 MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKDLESVCTPIIQKM-AGAGGMPXXXXXXXXDMGGAGFPGAGTPAPEADADAGPKIEEID 318
            MRNTI +EK+AS+LD ADK  IE  I E I WLD+NQ AE +E+E+K K+LES+C PII KM  GAG           DMGGAG    G P+    +  GPKIEE+D
Sbjct:   32 MRNTIKDEKIASKLDPADKKKIEDAIEEAIQWLDSNQLAEADEFEDKMKELESLCNPIIAKMYQGAGA----------DMGGAGMDEDG-PSAGGSSGPGPKIEEVD 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142711.2956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ7_FUCSE2.500e-4583.33Heat shock protein 70 (Fragment) n=1 Tax=Fucus ser... [more]
A0A6H5JJT8_9PHAE4.170e-3779.82HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 Rep... [more]
A0A6H5KQY2_9PHAE5.030e-3071.07HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A485KCI7_9STRA1.300e-2359.81Aste57867_4298 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7R9VQI5_9CHLO7.880e-2355.14Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A3R6YRE6_9STRA8.180e-2350.93Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
H6WB83_VAULI9.860e-2360.36Heat shock protein 70 n=1 Tax=Vaucheria litorea Ta... [more]
A0A6T7KQV5_9EUKA4.040e-2246.79Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A314UTT1_PRUYE4.040e-2252.78Heat shock 70 kDa protein n=3 Tax=Prunus yedoensis... [more]
A0A8D1WQ66_PIG8.490e-2253.27Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142711contigH-elongata_contig142711:5..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue6.9e-29
Seed eggNOG ortholog2880.D8LI58
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.ATP binding
EggNOG OGsCOG0443@1,KOG0101@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.1849961-CDS-H-elongata_contig142711:4..311622929847.1849961-CDS-H-elongata_contig142711:4..31Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142711 5..31 +
1691679181.613792-CDS-H-elongata_contig142711:4..311691679181.613792-CDS-H-elongata_contig142711:4..31Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142711 5..31 +
1622929847.199657-CDS-H-elongata_contig142711:174..4681622929847.199657-CDS-H-elongata_contig142711:174..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142711 175..468 +
1691679181.626241-CDS-H-elongata_contig142711:174..4681691679181.626241-CDS-H-elongata_contig142711:174..468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142711 175..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142711.2956.1prot_H-elongata_contig142711.2956.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142711 5..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142711.2956.1

>prot_H-elongata_contig142711.2956.1 ID=prot_H-elongata_contig142711.2956.1|Name=mRNA_H-elongata_contig142711.2956.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MRNTIYEEKVASQLDAADKSSIESKISETIAWLDANQNAEKEEYEEKQKD
LESVCTPIIQKMAGAGGMPGGMPGGMPDMGGAGFPGAGTPAPEADADAGP
KIEEID*
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mRNA from alignment at H-elongata_contig142711:5..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142711.2956.1 ID=mRNA_H-elongata_contig142711.2956.1|Name=mRNA_H-elongata_contig142711.2956.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=464bp|location=Sequence derived from alignment at H-elongata_contig142711:5..468+ (Himanthalia elongata Himel1 dioecious)
ATGCGTAACACCATCTACGAGGAGAAGGTAATGTTGAATATGTGGGAGTA
TATTGTTTGGCTCGTTTTCAGTTTCGTTTGTTGATATCATGGCGTTTCGA
TTCGAAATTCAAAATGTATAGTAAAACCCTAAAAATGTGTTTTGCAAATA
AATTATAACTCAACTTTCAGGTTGCGTCTCAACTGGACGCAGCGGACAAG
TCATCGATCGAGAGCAAGATCTCGGAAACAATCGCGTGGCTGGATGCAAA
CCAGAACGCGGAAAAGGAAGAGTACGAGGAGAAGCAGAAAGATTTAGAGT
CTGTGTGCACTCCAATCATCCAGAAGATGGCAGGGGCGGGTGGCATGCCT
GGCGGTATGCCCGGTGGTATGCCGGATATGGGCGGCGCTGGCTTCCCTGG
CGCGGGGACGCCTGCTCCAGAGGCCGACGCGGACGCTGGTCCAAAGATCG
AGGAGATTGACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig142711:5..468+

>mRNA_H-elongata_contig142711.2956.1 ID=mRNA_H-elongata_contig142711.2956.1|Name=mRNA_H-elongata_contig142711.2956.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig142711:5..468+ (Himanthalia elongata Himel1 dioecious)
ATGCGTAACACCATCTACGAGGAGAAGATGCGTAACACCATCTACGAGGA
GAAGGTTGCGTCTCAACTGGACGCAGCGGACAAGTCATCGATCGAGAGCA
AGATCTCGGAAACAATCGCGTGGCTGGATGCAAACCAGAACGCGGAAAAG
GAAGAGTACGAGGAGAAGCAGAAAGATTTAGAGTCTGTGTGCACTCCAAT
CATCCAGAAGATGGCAGGGGCGGGTGGCATGCCTGGCGGTATGCCCGGTG
GTATGCCGGATATGGGCGGCGCTGGCTTCCCTGGCGCGGGGACGCCTGCT
CCAGAGGCCGACGCGGACGCTGGTCCAAAGATCGAGGAGATTGACTAAGT
TGCGTCTCAACTGGACGCAGCGGACAAGTCATCGATCGAGAGCAAGATCT
CGGAAACAATCGCGTGGCTGGATGCAAACCAGAACGCGGAAAAGGAAGAG
TACGAGGAGAAGCAGAAAGATTTAGAGTCTGTGTGCACTCCAATCATCCA
GAAGATGGCAGGGGCGGGTGGCATGCCTGGCGGTATGCCCGGTGGTATGC
CGGATATGGGCGGCGCTGGCTTCCCTGGCGCGGGGACGCCTGCTCCAGAG
GCCGACGCGGACGCTGGTCCAAAGATCGAGGAGATTGACTAA
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