mRNA_H-elongata_contig142696.2955.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: D8LM02_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM02_ECTSI) HSP 1 Score: 329 bits (844), Expect = 8.210e-108 Identity = 199/291 (68.38%), Postives = 213/291 (73.20%), Query Frame = 1
Query: 1 SDPPED-SCSLRGLVWKVLLGTIHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSP-GGTVIAGESPASAGAXXXXXXXXXXXXXXXXG---------------SSAIAFSKAGTGAR-------TAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
+DP ED CSLRGLVWKVLLGTIH D+ LY RLV++GPS+EDVKIREDTFRTF D+EFRRRV+ DKLSRINNA+VRLN P GG +A + A XXXXXXXXXXXXX S++ K G GA T T G KGLYVQGMMVLCAPLLFVMPEVDAFY FNSLLN HMPR YVAANLDGVHAGCALVDR LS VDP LFNYLESKF+TANIYAFPL+MSLHACVPPLEE VKLWDAVFSFGVHLEVLICVAQ
Sbjct: 159 ADPGEDHQCSLRGLVWKVLLGTIHTDSMLYIRLVAKGPSSEDVKIREDTFRTFPRDEEFRRRVHEDKLSRINNAYVRLNHPDGGAPVAATAAADTXXXXXXXXXXXXXXXNDKHGGEEHPPKSEDVPRCSNSSIVDKEGAGAEAGGAAPATGGATGEGEERVGDGGKGLYVQGMMVLCAPLLFVMPEVDAFYCFNSLLNQHMPR------YVAANLDGVHAGCALVDRVLSMVDPVLFNYLESKFLTANIYAFPLVMSLHACVPPLEEAVKLWDAVFSFGVHLEVLICVAQ 443
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: K3WLK1_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLK1_GLOUD) HSP 1 Score: 181 bits (460), Expect = 5.790e-53 Identity = 103/264 (39.02%), Postives = 140/264 (53.03%), Query Frame = 1
Query: 13 EDSCSLRGLVWKVLLGT-IHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
E++CSLRG VWKV LG +D Y + RG S D IR DTFRTFRGD F +RV +KL R+ N F+ ++ G + ++ + + YVQGM VLCAPLL+VMPE DA+Y+F +L+ H P Y+A L GV +GC LVD+ L +DP LFN+L ++ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH V++ VA
Sbjct: 25 EENCSLRGRVWKVFLGVHAEIDRGKYAEMAERGASYCDGDIRNDTFRTFRGDPAFAQRVPEEKLVRLLNVFI-------------------------------------------NELGANSNSSGNSESKTASPDHPDYIRYVQGMNVLCAPLLYVMPEADAYYTFCNLIVKHCPH------YMAPKLKGVESGCLLVDKCLQTLDPDLFNHLSTRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 239
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A6H5JMC0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC0_9PHAE) HSP 1 Score: 182 bits (461), Expect = 1.810e-51 Identity = 112/209 (53.59%), Postives = 124/209 (59.33%), Query Frame = 1
Query: 1 SDPPED-SCSLRGLVWKVLLGTIHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSP-GGTVIA---------------------------GESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPR 540
+DP ED CSLRGLVWKVLLGTIH D+ LY RLV++GPS+EDVKIREDTFRTF D+EFRRRV+ DKLSRINNA+VRLN P GG +A GE G+ A + A GA + R G G KGLYVQGMMVLCAPLLFVMPEVDAFY FNSLLN HMPR
Sbjct: 187 TDPGEDHQCSLRGLVWKVLLGTIHTDSMLYIRLVAKGPSSEDVKIREDTFRTFPRDEEFRRRVHEDKLSRINNAYVRLNHPDGGAPVAATAAADTVRRGSEGQGREGSGSKDKHGGEEQPPKSEDVPRCSNPAIVHKDGAGAEAGGAAPASGGATGEREERVGDGG-----KGLYVQGMMVLCAPLLFVMPEVDAFYCFNSLLNQHMPR 390
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: W2HKV9_PHYPR (Rab-GAP TBC domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2HKV9_PHYPR) HSP 1 Score: 177 bits (448), Expect = 1.830e-50 Identity = 107/261 (41.00%), Postives = 136/261 (52.11%), Query Frame = 1
Query: 22 CSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
CSLRG VWK LG + +D Y LV RG S D IR DTFRTFRGD EF +RV +KL R+ N F+ G SP K G G + YVQGM VLCAPLL+V+PE DA+++F L+ H P Y+A L GV GCALVD+ L +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH V++ VA
Sbjct: 63 CSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDLEFAQRVPEEKLVRLLNVFINE--------LGSSPGE--------------------------EKQEDGDNARNGNLPSI---------RYVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYQHLSSRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 274
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A5D6XHK7_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHK7_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.990e-50 Identity = 104/268 (38.81%), Postives = 140/268 (52.24%), Query Frame = 1
Query: 1 SDPPEDSCSLRGLVWKVLLGT-IHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
+DP +CSLRG +WK+ LG +D Y L +RG S D IR DTFRTFRGD F +RV +KL+R+ N F+ GG A ++ G G YVQGM +LCAPLL+VMPE DA+Y+F L+ H P Y+A L GV +GC LVD+ L +D LF++L+S+ +TA IYA PL++SL AC PPL E +++WD +F+ GVH V++ VA
Sbjct: 61 ADPCGTTCSLRGRIWKLFLGVDAAVDREQYAALAARGASPFDGDIRNDTFRTFRGDPAFAQRVPEEKLARLLNVFINELGTGGAHDA--------------------------------------------SQVGEGHPEHIR---YVQGMNILCAPLLYVMPEADAYYTFRQLVMKHCPH------YMAPRLQGVESGCLLVDKCLQTLDVDLFHHLKSRGITARIYALPLVLSLFACAPPLHELLRVWDVLFAVGVHFVVVLAVAH 275
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A225VL10_9STRA (Rab-GAP TBC domain-containing protein (Fragment) n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VL10_9STRA) HSP 1 Score: 176 bits (445), Expect = 2.380e-50 Identity = 106/268 (39.55%), Postives = 138/268 (51.49%), Query Frame = 1
Query: 1 SDPPEDSCSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
+D CSLRG VWK LG + +D Y LV RG S D IR DTFRTFRGD EF +RV +KL R+ N F+ G +P K G G + YVQGM VLCAPLL+V+PE DA+++F L+ H P Y+A L GV GCALVD+ L +DP L+ +L S+ ++A IYA PL++SL ACVPPL E +++WD +F+ GVH V++ VA
Sbjct: 50 TDSNASLCSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDSEFAQRVPEEKLVRLLNVFINE--------LGSNPGE--------------------------EKQEDGEHARGGNLPSI---------RYVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYRHLSSRGISAQIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 268
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A0P1AU96_PLAHL (Bub2 protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AU96_PLAHL) HSP 1 Score: 178 bits (452), Expect = 3.560e-50 Identity = 110/267 (41.20%), Postives = 141/267 (52.81%), Query Frame = 1
Query: 7 PPEDS-CSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
P +DS CSLRG VWK LG + +D Y LV RG S D IR DTFRTFRGD EF +RV +KL R+ N F+ G SP+ ++ K R G YVQGM VLCAPLL+V+PE DA++ F L+ H P Y+A L GV GCALVD+ L +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH V++ VA
Sbjct: 43 PRDDSLCSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDLEFAQRVPEEKLVRLLNVFINE--------LGSSPSEE-----------------------------ENSKDGKNGRCG-----NLPSIRYVQGMNVLCAPLLYVLPEPDAYHMFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYRHLASRGITAQIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVILAVAH 261
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: W2RIC6_PHYPN (Rab-GAP TBC domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2RIC6_PHYPN) HSP 1 Score: 179 bits (453), Expect = 6.900e-50 Identity = 109/263 (41.44%), Postives = 141/263 (53.61%), Query Frame = 1
Query: 22 CSLRGLVWKVLLGTIH-MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRL--NSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
CSLRG VWK LG + +D Y LV RG S D IR DTFRTFRGD EF +RV +KL R+ N F+ +SPG A G + F+K G + YVQGM VLCAPLL+V+PE DA+++F L+ H P Y+A L GV GCALVD+ L +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH V++ VA
Sbjct: 63 CSLRGRVWKAFLGVENDVDMTKYAALVGRGASHYDGDIRNDTFRTFRGDLEFAQRVPEEKLVRLLNVFINELGSSPGEEKQEDGDNARNG---NLPSIRWVAFAFWQNNVFFFFNKVG--------------------RSRYVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLQTLDPDLYQHLSSRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 296
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A6A3MEJ8_9STRA (Rab-GAP TBC domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MEJ8_9STRA) HSP 1 Score: 174 bits (442), Expect = 1.490e-48 Identity = 105/261 (40.23%), Postives = 137/261 (52.49%), Query Frame = 1
Query: 22 CSLRGLVWKVLLGT-IHMDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
C+LRG VWK LG +D Y+ LV RG S D IR DTFRTFRGD EF +RV +KL R+ N F+ G +P R K +G + YVQGM VLCAPLL+V+PE DA+++F L+ H P Y+A L GV GCALVD+ L +DP L+ +L S+ +TA IYA PL++SL ACVPPL E +++WD +F+ GVH V++ VA
Sbjct: 55 CTLRGRVWKAFLGVESDVDMTKYSALVGRGASHYDGDIRNDTFRTFRGDSEFAQRVPEEKLVRLLNVFINE--------LGSNPD----------------------------------RDEKKEDGELGGNLPSIR--YVQGMNVLCAPLLYVLPEPDAYHTFCQLIVRHCPH------YMAPQLKGVEKGCALVDKCLETLDPDLYRHLSSRGITARIYALPLILSLFACVPPLHELLRVWDVLFAVGVHFVVVLAVAH 265
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Match: A0A024GJW3_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GJW3_9STRA) HSP 1 Score: 177 bits (450), Expect = 2.130e-48 Identity = 104/265 (39.25%), Postives = 144/265 (54.34%), Query Frame = 1
Query: 13 EDSCSLRGLVWKVLLGTIH--MDAALYTRLVSRGPSAEDVKIREDTFRTFRGDDEFRRRVNADKLSRINNAFVRLNSPGGTVIAGESPASAGAXXXXXXXXXXXXXXXXGSSAIAFSKAGTGARTAKGTRAGVGXXXXXXKGLYVQGMMVLCAPLLFVMPEVDAFYSFNSLLNDHMPRRENRVVYVAANLDGVHAGCALVDRALSAVDPSLFNYLESKFVTANIYAFPLLMSLHACVPPLEETVKLWDAVFSFGVHLEVLICVAQ 801
+ +CSLRG VWK LLG ++ + YT +V +GPS D IR DTFRTFRGD+ F +V L+ + NAF+ + E S+ A I+FS +YVQGM +LC P L+VMPE DA+YSF+ LL H PR Y+A L GV AGCAL+D+ L +DP LF +L +K +TA IYA P+++SL AC+PPL++ +++WD +F+ GVH VL+ V+
Sbjct: 204 QQTCSLRGRVWKALLGVTPSMINVSKYTEIVQQGPSFFDADIRNDTFRTFRGDEAFAEKVPEAHLATLLNAFITQHL--------ERAKSSKAKEDDDRETSRVRY-------ISFSIF---------EPVPADFQREPSLFIYVQGMNILCGPFLYVMPECDAYYSFSQLLTRHCPR------YMAPQLKGVEAGCALMDQCLEILDPELFEHLHAKGITARIYALPMILSLFACMPPLKQLLRVWDTLFAIGVHFVVLLAVSH 438 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142696.2955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig142696.2955.1 >prot_H-elongata_contig142696.2955.1 ID=prot_H-elongata_contig142696.2955.1|Name=mRNA_H-elongata_contig142696.2955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp SDPPEDSCSLRGLVWKVLLGTIHMDAALYTRLVSRGPSAEDVKIREDTFRback to top mRNA from alignment at H-elongata_contig142696:627..1582+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig142696.2955.1 ID=mRNA_H-elongata_contig142696.2955.1|Name=mRNA_H-elongata_contig142696.2955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=956bp|location=Sequence derived from alignment at H-elongata_contig142696:627..1582+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig142696:627..1582+ >mRNA_H-elongata_contig142696.2955.1 ID=mRNA_H-elongata_contig142696.2955.1|Name=mRNA_H-elongata_contig142696.2955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig142696:627..1582+ (Himanthalia elongata Himel1 dioecious)back to top |