mRNA_H-elongata_contig142658.2953.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142658.2953.1
Unique NamemRNA_H-elongata_contig142658.2953.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142658.2953.1 vs. uniprot
Match: D8LD16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD16_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.290e-24
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:   19 FEKGDEVLYVRGSDPPLEGTVQKVHMEEYPPYYTVLISITGREKNTDAAHLRYKNGE 189
            FEKGDEVLY+RGSDPPL+G VQKVH+E+  PYYTVLI++TGREKNTD AHLR+K  E
Sbjct:   52 FEKGDEVLYIRGSDPPLDGVVQKVHLEDETPYYTVLIAVTGREKNTDRAHLRHKGAE 108
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BLAST of mRNA_H-elongata_contig142658.2953.1 vs. uniprot
Match: A0A6H5KW83_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW83_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 9.640e-22
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   19 FEKGDEVLYVRGSDPPLEGTVQKVHMEEYPPYYTVLISITGREKNTDAAHLRYKNGE 189
            F  GDEVLY+RGSDPPL+G VQKVH+E+  PYYTVLI+ITGREKNTD AHLR+K  E
Sbjct:  698 FAPGDEVLYIRGSDPPLDGVVQKVHLEDETPYYTVLIAITGREKNTDRAHLRHKGAE 754
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BLAST of mRNA_H-elongata_contig142658.2953.1 vs. uniprot
Match: A0A7S3XLD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLD8_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 6.400e-8
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:   10 PQRFEKGDEVLYVRGSDPPLEGTVQKVHMEEYPPYYTVLISITGREKNTDAAHLRYK 180
            P +F+ G+EVLYV          + KVH EE PP++T+++S++G EKNT    LR K
Sbjct:  616 PPQFQNGEEVLYVDAEGGLQPARIAKVHNEEVPPFFTIVLSVSGMEKNTTLERLRKK 672
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BLAST of mRNA_H-elongata_contig142658.2953.1 vs. uniprot
Match: A0A7S4DB20_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB20_HETAK)

HSP 1 Score: 53.1 bits (126), Expect = 6.210e-7
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   13 QRFEKGDEVLYVRGSDPPLEGTVQKVHMEEYPPYYTVLISITGREKNTDAAHL 171
            Q+F +G+E+LY R S+ P    + KVH E  PPYY+V I  TGRE+ T   H+
Sbjct:   93 QQFVEGEEILY-RSSNGPEPARINKVHYESQPPYYSVHIYSTGRERQTSFGHI 144
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BLAST of mRNA_H-elongata_contig142658.2953.1 vs. uniprot
Match: A0A7S3Y009_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y009_HETAK)

HSP 1 Score: 48.5 bits (114), Expect = 1.180e-5
Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1 
Query:   16 RFEKGDEVLY-VRGSDPPLEGTVQKVHME--EYPPYYTVLISITGREKNTDAAHLRYKNGE 189
            +F K D V+Y   G  PP E T+ KVH +  E  PYYT+++S  GREK T    L+ K  E
Sbjct:   15 QFRKRDFVIYQANGDTPPEEATIVKVHYDDIENGPYYTIVLSSDGREKQTVERKLKRKETE 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142658.2953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LD16_ECTSI2.290e-2477.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW83_9PHAE9.640e-2275.44Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XLD8_HETAK6.400e-843.86Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DB20_HETAK6.210e-747.17Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y009_HETAK1.180e-544.26Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142658contigH-elongata_contig142658:1034..1222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_001910.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.9738626-CDS-H-elongata_contig142658:1033..12221622929846.9738626-CDS-H-elongata_contig142658:1033..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142658 1034..1222 -
1691679181.571195-CDS-H-elongata_contig142658:1033..12221691679181.571195-CDS-H-elongata_contig142658:1033..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142658 1034..1222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142658.2953.1prot_H-elongata_contig142658.2953.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142658 1034..1222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142658.2953.1

>prot_H-elongata_contig142658.2953.1 ID=prot_H-elongata_contig142658.2953.1|Name=mRNA_H-elongata_contig142658.2953.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
PSPPQRFEKGDEVLYVRGSDPPLEGTVQKVHMEEYPPYYTVLISITGREK
NTDAAHLRYKNGE
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mRNA from alignment at H-elongata_contig142658:1034..1222-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142658.2953.1 ID=mRNA_H-elongata_contig142658.2953.1|Name=mRNA_H-elongata_contig142658.2953.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig142658:1034..1222- (Himanthalia elongata Himel1 dioecious)
CCCTCCCCGCCCCAGCGCTTCGAAAAGGGCGACGAAGTGCTGTACGTCCG
AGGGAGCGACCCTCCGCTGGAAGGCACGGTTCAGAAGGTGCACATGGAGG
AATACCCCCCTTACTACACGGTGCTGATCTCCATCACCGGACGAGAGAAA
AACACGGACGCAGCTCACCTTCGATACAAGAATGGCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig142658:1034..1222-

>mRNA_H-elongata_contig142658.2953.1 ID=mRNA_H-elongata_contig142658.2953.1|Name=mRNA_H-elongata_contig142658.2953.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig142658:1034..1222- (Himanthalia elongata Himel1 dioecious)
CCCTCCCCGCCCCAGCGCTTCGAAAAGGGCGACGAAGTGCTGTACGTCCG
AGGGAGCGACCCTCCGCTGGAAGGCACGGTTCAGAAGGTGCACATGGAGG
AATACCCCCCTTACTACACGGTGCTGATCTCCATCACCGGACGAGAGAAA
AACACGGACGCAGCTCACCTTCGATACAAGAATGGCGAACCCTCCCCGCC
CCAGCGCTTCGAAAAGGGCGACGAAGTGCTGTACGTCCGAGGGAGCGACC
CTCCGCTGGAAGGCACGGTTCAGAAGGTGCACATGGAGGAATACCCCCCT
TACTACACGGTGCTGATCTCCATCACCGGACGAGAGAAAAACACGGACGC
AGCTCACCTTCGATACAAGAATGGCGAA
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