mRNA_H-elongata_contig142620.2950.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142620.2950.1
Unique NamemRNA_H-elongata_contig142620.2950.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142620.2950.1 vs. uniprot
Match: D8LBD4_ECTSI (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD4_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 8.480e-53
Identity = 81/116 (69.83%), Postives = 100/116 (86.21%), Query Frame = 1 
Query:    1 MNVRGKATVDGFFAMPKAYFGSPEIPSADQIVRVTVFPTTAVEMHSQQPGDVISPDLLDRYESGRFFELVNYALNPASEDVVEELFQAGFESGSVWCGRYGDGYRRRHEEKYAGSV 348
            M VRG+ TVDGFFAMP+A FG+P+IP+AD++VR+TVFPTT+V M S +PGD+ISPDLLDRY+SGRF EL+NYALNP ++ V EELF AGFESG VWC +YG+ YRRRHEEKY+  +
Sbjct:  193 MQVRGQPTVDGFFAMPRAQFGAPDIPTADEVVRITVFPTTSVPMQSDKPGDLISPDLLDRYQSGRFMELLNYALNPGNDFVQEELFNAGFESGGVWCDKYGEDYRRRHEEKYSPEM 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142620.2950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBD4_ECTSI8.480e-5369.83PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142620contigH-elongata_contig142620:2..1339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue1.5e-43
Seed eggNOG ortholog2880.D8LBD4
GOsGO:0003674,GO:0003824,GO:0004806,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005811,GO:0005829,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010876,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0010896,GO:0010898,GO:0016020,GO:0016042,GO:0016043,GO:0016298,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019433,GO:0019915,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031981,GO:0032879,GO:0033036,GO:0034389,GO:0042592,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0048518,GO:0048519,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050994,GO:0050996,GO:0051179,GO:0051235,GO:0052689,GO:0055088,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090207,GO:0090208,GO:1901575,GO:1905952,GO:1905953
EggNOG free text desc.triglyceride catabolic process
EggNOG OGsKOG3773@1,KOG3773@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl transferase/acyl hydrolase/lysophospholipase
Ec32 orthologEc-27_004350.1
Exons3
Model size738
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142620.2950.1prot_H-elongata_contig142620.2950.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142620 374..1339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.7309906-UTR-H-elongata_contig142620:1..3731622929846.7309906-UTR-H-elongata_contig142620:1..373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142620 2..373 -
1691679181.4587567-UTR-H-elongata_contig142620:1..3731691679181.4587567-UTR-H-elongata_contig142620:1..373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142620 2..373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.7434857-CDS-H-elongata_contig142620:373..4621622929846.7434857-CDS-H-elongata_contig142620:373..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142620 374..462 -
1691679181.471143-CDS-H-elongata_contig142620:373..4621691679181.471143-CDS-H-elongata_contig142620:373..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142620 374..462 -
1622929846.7601047-CDS-H-elongata_contig142620:844..9421622929846.7601047-CDS-H-elongata_contig142620:844..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142620 845..942 -
1691679181.4811683-CDS-H-elongata_contig142620:844..9421691679181.4811683-CDS-H-elongata_contig142620:844..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142620 845..942 -
1622929846.772059-CDS-H-elongata_contig142620:1160..13391622929846.772059-CDS-H-elongata_contig142620:1160..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142620 1161..1339 -
1691679181.4916737-CDS-H-elongata_contig142620:1160..13391691679181.4916737-CDS-H-elongata_contig142620:1160..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142620 1161..1339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142620.2950.1

>prot_H-elongata_contig142620.2950.1 ID=prot_H-elongata_contig142620.2950.1|Name=mRNA_H-elongata_contig142620.2950.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MNVRGKATVDGFFAMPKAYFGSPEIPSADQIVRVTVFPTTAVEMHSQQPG
DVISPDLLDRYESGRFFELVNYALNPASEDVVEELFQAGFESGSVWCGRY
GDGYRRRHEEKYAGSVNGRPL*
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mRNA from alignment at H-elongata_contig142620:2..1339-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142620.2950.1 ID=mRNA_H-elongata_contig142620.2950.1|Name=mRNA_H-elongata_contig142620.2950.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1338bp|location=Sequence derived from alignment at H-elongata_contig142620:2..1339- (Himanthalia elongata Himel1 dioecious)
ATGAACGTACGGGGAAAGGCTACCGTGGATGGCTTCTTCGCGATGCCGAA
GGCGTACTTCGGGTCTCCAGAGATACCCTCGGCAGATCAAATCGTGCGTG
TAACGGTTTTCCCCACTACCGCGGTCGAGATGCATTCTCAACAACCCGGT
GACGTCATATCGCCGGATCTTCTCGACAGGCGAGGGCAGGATCACCACCA
TTACCACCATTACCACCGCCAAGCAGCGTAGGCCTTTTGTGCAGCAGGAG
GCGTGATGCGGCGATAGGTTGGAAACCGTTTTTTATTGCTGACTGAAATG
ACCCACGAGTGTCTAACCTTGTAACGGCGCTTATGATTTCATTCTACGAA
CCGTGGCACTGTGCTGCACTGTGGCACTGCACGTTGTGTTCCGACAGGTA
CGAGAGCGGACGGTTCTTCGAGCTCGTAAACTACGCATTAAACCCTGCGA
GCGAGGACGTCGTAGAAGAGCTCTTTCAGGCCGGCTTTGAGTCTGGCGAG
TCTGCTGACCAATCTTAAGTTCTCGTGTGATGCTCGAGACCAGCCCCTCT
TCTCCCTGCCTGCACAGGATAACGCCTGCTGCATACAAGCCTTCCCCACC
ATGCAGTACGCTCAGGATCAACTCTATTTACTTCTACCCCTTGTACATAA
AAAAGCGACCTTGCTCGGAAATTTCAAACGCCGTAGATGGTACACCTTTC
TTAATCTCAATCGTCAATCGAAGGGAGTCAAATCACCCACGGGAATATGA
AAATCCATAAAGACGTGTCGCATCGATGTTTCCCCATAAATAATCGTAAT
TCCTTCCCAACATTGTTTCCTAGCGAGTCCTTTCATGTCTTACCTTAGGC
AGTTTTGTTCTCTTGTTTTTTGTTCAGGGAGTGTCTGGTGCGGAAGATAC
GGCGACGGCTACCGGAGGCGACACGAGGAGAAATACGCCGGCAGTGTTAA
TGGTCGTCCCCTGTAATAATAGTTGAAAAGAAGAAGGAAACATTCCCGTG
GCAATCGGCGGTCAAATGCTTGCTTTGCGTTGCATAGACCTATATTGCTA
CAAAGTTCAAGGTATTTGAACACTCCGGTGAGAGTTAGGGTGTGGGATTT
ACGTCGTAGGCTCTAGGGGAATATCACCATCTCGACCACCGCCACAGCGT
CTTTTCGTACAGCTGAGTGCTCGGCTCTCAGAGGACGAACACCATCGATT
CGGGGGACTTCCTGCTTGTAACGCTCATTCGAGTTTAGGCTGTGTAAACA
TTAACCATCTAGAAGAAAAACTTGACGGTTCAAAGGAATCAGCCGCACAG
TTTGTTTATTTATTTTTCATACGTACCCCTTCCTTCGA
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Coding sequence (CDS) from alignment at H-elongata_contig142620:2..1339-

>mRNA_H-elongata_contig142620.2950.1 ID=mRNA_H-elongata_contig142620.2950.1|Name=mRNA_H-elongata_contig142620.2950.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig142620:2..1339- (Himanthalia elongata Himel1 dioecious)
ATGAACGTACGGGGAAAGGCTACCGTGGATGGCTTCTTCGCGATGCCGAA
GGCGTACTTCGGGTCTCCAGAGATACCCTCGGCAGATCAAATCGTGCGTG
TAACGGTTTTCCCCACTACCGCGGTCGAGATGCATTCTCAACAACCCGGT
GACGTCATATCGCCGGATCTTCTCGACAGATGAACGTACGGGGAAAGGCT
ACCGTGGATGGCTTCTTCGCGATGCCGAAGGCGTACTTCGGGTCTCCAGA
GATACCCTCGGCAGATCAAATCGTGCGTGTAACGGTTTTCCCCACTACCG
CGGTCGAGATGCATTCTCAACAACCCGGTGACGTCATATCGCCGGATCTT
CTCGACAGGTACGAGAGCGGACGGTTCTTCGAGCTCGTAAACTACGCATT
AAACCCTGCGAGCGAGGACGTCGTAGAAGAGCTCTTTCAGGCCGGCTTTG
AGTCTGGTACGAGAGCGGACGGTTCTTCGAGCTCGTAAACTACGCATTAA
ACCCTGCGAGCGAGGACGTCGTAGAAGAGCTCTTTCAGGCCGGCTTTGAG
TCTGGGAGTGTCTGGTGCGGAAGATACGGCGACGGCTACCGGAGGCGACA
CGAGGAGAAATACGCCGGCAGTGTTAATGGTCGTCCCCTGTAAGGAGTGT
CTGGTGCGGAAGATACGGCGACGGCTACCGGAGGCGACACGAGGAGAAAT
ACGCCGGCAGTGTTAATGGTCGTCCCCTGTAA
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