mRNA_H-elongata_contig14250.2940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14250.2940.1
Unique NamemRNA_H-elongata_contig14250.2940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: D7FTE2_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE2_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 1.510e-126
Identity = 225/304 (74.01%), Postives = 265/304 (87.17%), Query Frame = 1 
Query:    1 PFQPQASTSGRFFGIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTGNTAAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTSEKTNNHDMLSLRLYTEAQEAWEVDTYDEDEDELDALVHHMEHELFDVHDSLQETIETLRGAEEQAEKRLADLEESLSKHVMEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEMSASWRWPFYGLLGVVLGMVAVSLSKYKQLKKQHLL 912
            P + +A   GRFFGI + FTGL ++ NTNR LL+++  PGEP GRHRDVSV+ANNGTR++G+L+  LEGCTANVRFDE RDDFNV+QSTR+RLKV GNT A+E+DARN GRWRRC T+AHLDMP+DWA+KSN+G+IA+TSEKTNNHD+LSLR+YT   +AWEVDTY++DEDE+D+L+HHMEHELF+VHDSL+ETI+TL  AE  AE RL  LEE+LS  VM+AL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G+MSASWRWPFY LL +V+GMVA S +KYKQLKKQHLL
Sbjct:  128 PMKYKAGQDGRFFGIDEKFTGLVVVANTNRQLLNRDKLPGEPMGRHRDVSVIANNGTRNYGNLIDSLEGCTANVRFDETRDDFNVMQSTRVRLKVEGNTVAMEVDARNAGRWRRCSTIAHLDMPADWASKSNVGIIAKTSEKTNNHDLLSLRVYTNPNDAWEVDTYEDDEDEMDSLMHHMEHELFNVHDSLRETIDTLAQAERDAETRLLLLEENLSNSVMQALESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKMSASWRWPFYALLSLVIGMVAFSFTKYKQLKKQHLL 431
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A835YN92_9STRA (Concanavalin A-like lectin/glucanase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN92_9STRA)

HSP 1 Score: 202 bits (515), Expect = 2.640e-58
Identity = 138/299 (46.15%), Postives = 183/299 (61.20%), Query Frame = 1 
Query:   28 GRFFGIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTGNTAAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTSEKTNNHDMLSLRLYTEAQEAWEVDTYD-EDED---ELDALVHHMEHELFDVHDSLQETIETLRGAEEQAEKRLADLEESLSKHVMEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEMSASWRWPFYGLLGVVLGMVAVSLSKYKQLKKQHLL 912
            G  FG+   FTG+ I+V+T R          E + RHRDVSVV ++G R    + + L GC ANVR+ E RDDFNVL++TRIR  V  N   +++DARNTGRWRRCVT+  +D+P  WA ++  G++A    ++NN+D+LSLRLY  A  AW ++ Y+ EDED   E   LVHH+EHE+F VH+SL+  ++ L  AE  AE R+  LE  LS  +   L     XXXXXXXXXXXXXXXXXXX                   + + +WR+PFY L G V  M  +S  KY +L+K+HLL
Sbjct:  170 GDVFGMDAAFTGIGIVVDTKR---------NEGDNRHRDVSVVMSDGRRTREQIQSNLVGCNANVRYWEGRDDFNVLRATRIR--VNENLFTLDIDARNTGRWRRCVTMNTVDLPRGWAERATAGLLAGNQAESNNNDVLSLRLYKSADSAWVLEKYEGEDEDADGEWGILVHHIEHEMFTVHNSLKSAVQLLEKAETSAEHRITALENKLSGDIARKLEERMRXXXXXXXXXXXXXXXXXXXAAEKTMAERMESTLSGSAAQAARTWRYPFYLLCGAVGAMCLLSYLKYNELRKEHLL 457
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A835YWL8_9STRA (Legume-like lectin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.330e-50
Identity = 141/292 (48.29%), Postives = 194/292 (66.44%), Query Frame = 1 
Query:   55 FTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTGNTAAVE--LDARNTGRWRRCVT--LAHLDMPSD-WAAKSNIGMIAQTSEKTNNHDMLSLRLYTEAQEAWEVDT---YDEDEDELDALVHHMEHELFDVHDSLQETIETLRGAEEQAEKRLADLEESLSKHVMEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEMSASWRWPFYGLLGVVLGMVAVSLSKYKQLKKQH 906
            FTG+ ++V+TN      N K G     H DVS+V N+G+R   D V  LEGC A +RF E RDDFNVL+++R+R+K T  T  +E  +D RNTGRWRRC T  LA   +P+  W   +++G++A T+  ++NHD+LSLR+Y    +A + D    ++E++D+   LVHHMEHEL+DVH +LQ+T++ L   E ++E+R+A LE  LS+ V+  L  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         +G +SA WR PF  LL V+ G++  +  +Y  LK+ H
Sbjct:  111 FTGVMVVVDTN-----PNDKAG---ANHFDVSIVYNDGSR--ADAVQNLEGCIAPLRFHEGRDDFNVLKASRLRIKYTAATRMLEVDMDPRNTGRWRRCATANLAKRGLPAGGWPRTAHVGLVAATTGSSDNHDVLSLRVYDTLDQAAQTDETEGHEEEDDDYMVLVHHMEHELYDVHAALQKTLDQLFQQEAESEQRIAQLESQLSRQVLTRLDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKFEQGVNAQIGRVSAGWRAPFVVLLLVLAGVMFAAYKQYSTLKRAH 392
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: D8LAZ3_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ3_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.160e-30
Identity = 86/313 (27.48%), Postives = 148/313 (47.28%), Query Frame = 1 
Query:   25 SGRFFGIQDTFTGLAIIVNTNRALLSKNLK--PGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTGNTAAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTS-EKTNNHDMLSLRLYTEAQEAWEVDTYD----EDEDELD----------ALVHHMEHELFDVHDSLQETIETLRGAEEQAEKRLADLEESLSKHVMEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEMSASWRWPFYGLLGVVLGMVAVSLSKYKQLKKQHLL 912
            +G  +G+ + F G+ ++++        ++   P    G  + VS +ANNGTR   D+      C + +R+ + RDDFN L+ +RIRL       ++E+DARN G WR+C+T    DMP  W  ++ + ++ +TS E +NNHD++SL +YTE  +A++    D    ED  E D          A   H+EHE   V   L+++++ L    +  + R+  LE+ +S  V   L                                         + + +  +R PF+ +L VVL + AVS+ +Y++L + + L
Sbjct:  151 TGDTYGVPEDFIGVGVVISPRPPSDLSDISGAPIRAPGPRQFVSFIANNGTRTTEDVRMAANSCASTLRYYQGRDDFNFLKMSRIRLGYYDGEISLEVDARNVGVWRKCITTKVTDMPEGWLDRAGVIVVGETSREVSNNHDVMSLEVYTEKSDAFDAKKVDGDVEEDNPEADLAERKKKRMYAFKAHLEHEFDAVERVLKDSVDKLADVNDNMQSRITKLEKDISTEVFSQLNRRVKDIESRVTKNATPTLENRLSVAKELWSGETGDSMESLL-KKNTGYRLPFFVVLAVVLALFAVSVKQYRRLMRSNFL 462
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A6V1PFQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PFQ7_HETAK)

HSP 1 Score: 122 bits (307), Expect = 2.410e-28
Identity = 95/323 (29.41%), Postives = 137/323 (42.41%), Query Frame = 1 
Query:   28 GRFFGIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKV--------------TGNT-----------AAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTSEKTNNHDMLSLRLYTEAQEAW---EVDTYDEDEDELDALVHHMEHELFDVHDSLQETIETLRGAEEQAEKRLADLEESLSKHVMEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGEMSASWRWPFYGLLGVVLGMVAVSLSKYKQLKKQHLL 912
            G  FG+ +   G+ +++ T R  + +    G  N     V ++  +GT   G LV    GC +  R+ E R DF V  S+R+RL+V               G T           A VE+D+R +G WR CV      +P  W A S +G++  TS +TNN D L+LR++  A  A+   E  + +E+ +E+D LVH +EHEL  V   L   +  L   E  AE RLA LE  L   V   L                                          G  +A+WR PF  L   V  +   +  KY+ L+K+HLL
Sbjct:  110 GPVFGMPENIVGVGVVLETGRIGVDRRSTVGRKN-----VRLLVMDGTDGVG-LVNDAIGCQSTFRYQEDRGDFGVHLSSRLRLRVEAVDPPSPPQQNGTAGATVRSLPASGPGWAVVEVDSRASGHWRTCVRAPLHSLPQGWLADSRLGLVGATSARTNNQDALALRVFGTASGAFARAEALSMEEEVEEVDLLVHRLEHELQGVEAKLAAALRALEDREGAAEARLAALEARLEGKVAAELDARVVKLERDVGDFFSNAMVARLQRLEARFEDRVDGALAEARGHANAAWRLPFLALAAAVAALGGAAWRKYRALRKEHLL 426
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A7S2FHL9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHL9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.190e-26
Identity = 68/205 (33.17%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:   40 GIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTGNTAAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTSEKTNNHDMLSLRLYTEAQEAWEVDTYDE-------DEDELDALVHHMEHELFDVHDSLQETIETLRGAEEQAEKRLAD 633
            G   TFTG  +I +T       + +P      H+DVS++ N+GTR   ++++   GC A+VR+ E R DF+V+ ++R ++     +  + LDA + G W  C T+  LD+P+D+ +K   GM A T    +NHD+LSL++Y+E  E   ++           +  E+D L HH+EH+   V+D ++ T E L  +E+   K L D
Sbjct:  125 GASSTFTGFGVIFDT----FKNSERP------HKDVSILVNDGTRSAEEMMSTAVGCDASVRYHEGRADFSVMHASRAKVTYKEGSLTLSLDAESNGEWETCATIDRLDLPADFDSKVYTGMSASTGALADNHDVLSLQVYSEVNELALLEESGHAAVAARPELSEIDELKHHVEHQFVAVYDHVKVTSEKLEKSEKADLKSLQD 319
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A835ZHK2_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 8.700e-25
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:   40 GIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTG-NTAAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGM 405
            G  + F G+ +IV+T R            + +HRD+S+V NNG +    ++  L+GC AN+R+ E RDDF VL+S+R+RL+ +  NT  +E+D+RN+GRWRRC  +   D+P  WA +S +G+
Sbjct:    1 GCAEKFMGVGVIVDTYRRA---------EDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTVLKSSRLRLRFSSDNTLILEVDSRNSGRWRRCARIDKADLPRSWAYRSYVGL 114
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A7S2B8C4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8C4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.590e-24
Identity = 75/238 (31.51%), Postives = 122/238 (51.26%), Query Frame = 1 
Query:   28 GRFFGIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTGNTAAVELDARNTGRWRRCVTLAHLDMP--SDWAAKSNIGMIAQTSEKTNNHDMLSLRLYTE-----------------------AQEAWE--VDTYDEDEDELDALVHHMEHELFDVHDSLQETIETLRGAEEQAEKRLADLEESLSKHV 660
            G   G  + FTG  +I +T         K  E   RHRDVSV+ N+G      ++  LEGC A++R+ E R DF+V   +R ++ VTG    V++D +N G+++ C   A +D+P   DWA  ++IG+ A T +  +NHD++SL  +++                       +QE +E   DT  +  D+L+ L HH EHEL  V D ++ +   L+  E  +E R+ +LE  +  ++
Sbjct:  137 GDLHGSVERFTGFGVIFDT--------FKNTESLSRHRDVSVIVNDGESSTELMMDKLEGCDASIRYHEDRADFSVESMSRAKVIVTGKRLVVQIDGKNDGQFKDC---AVVDLPFAMDWAKSAHIGVTASTGQLADNHDVISLTTFSDLVKHEQSEALVLSTPSFVKGDGISQERFERIEDTMSKILDKLEYLEHHTEHELMAVEDHIKVSTSKLQAQEAISEGRIDELETKVVSNI 363
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BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A5A8CKL6_CAFRO (L-type lectin-like domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKL6_CAFRO)

HSP 1 Score: 104 bits (259), Expect = 2.110e-21
Identity = 57/152 (37.50%), Postives = 84/152 (55.26%), Query Frame = 1 
Query:   28 GRFFGIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDLVAGLE-----GCTANVRFDERRDDFNVLQS---TRIRLKVTGNTAAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTSEKTNNHDMLSLRL 459
            G   G  DTFTG  +I +T       N +PG     H+DVS+V N+G +       G+      GC A+ RF E RDDFN  ++    RI       +  VE+DARNTG W +C+  A +D+P+DW   +++GM A T +  +NHD++SL++
Sbjct:  131 GPLHGYTDTFTGFGVIFDT-----FVNTEPGHV---HKDVSLVTNDGQQSRAAPHGGVNDPQAPGCDADFRFHEGRDDFNAAKARSAARIHYDSRSRSLTVEIDARNTGEWVKCIDKAVVDLPADWHRSAHVGMTATTGQLADNHDIISLQM 274
[Close]
BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Match: A0A421GXX3_9STRA (L-type lectin-like domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GXX3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.140e-15
Identity = 47/151 (31.13%), Postives = 80/151 (52.98%), Query Frame = 1 
Query:   22 TSGRFFGIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVSVVANNGTRDFGDL-VAGLEGCTANVRFDERRDDFNVLQS-TRIRLKVTGNTAAVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTSEKTNNHDMLSLRLYTE 468
            T G   G  D + G+ ++++T            E  G H+DVS+  N+GT+ +  +     EGC A VR+ E+  +F+ + S +R+++K++ N  AVE+D  ++G W  C  +  L    DW  +S IG+ A T    +NHD++    YT+
Sbjct:  109 TPGVNHGFTDKYKGVGVVIDT--------FNNPEHKGGHKDVSIFVNDGTKTYDQMHEEKREGCNAAVRYHEQSANFDPVHSISRVKVKISKNRLAVEVDEHSSGLWVACHEMT-LPFSEDWLRESTIGITASTGALADNHDIIRFDAYTD 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14250.2940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE2_ECTSI1.510e-12674.01L-type lectin-like domain-containing protein n=2 T... [more]
A0A835YN92_9STRA2.640e-5846.15Concanavalin A-like lectin/glucanase domain-contai... [more]
A0A835YWL8_9STRA2.330e-5048.29Legume-like lectin family-domain-containing protei... [more]
D8LAZ3_ECTSI1.160e-3027.48L-type lectin-like domain-containing protein n=2 T... [more]
A0A6V1PFQ7_HETAK2.410e-2829.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FHL9_9STRA2.190e-2633.17Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835ZHK2_9STRA8.700e-2540.65L-type lectin-like domain-containing protein n=1 T... [more]
A0A7S2B8C4_9STRA8.590e-2431.51Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5A8CKL6_CAFRO2.110e-2137.50L-type lectin-like domain-containing protein n=1 T... [more]
A0A421GXX3_9STRA3.140e-1531.13L-type lectin-like domain-containing protein n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14250contigH-elongata_contig14250:975..7962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score376.3
Seed ortholog evalue1.3e-101
Seed eggNOG ortholog2880.D7FTE2
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3839@1,KOG3839@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLectin domain
Ec32 orthologEc-21_001000.1
Exons7
Model size915
Cds size915
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.892065-CDS-H-elongata_contig14250:974..10821622929845.892065-CDS-H-elongata_contig14250:974..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 975..1082 -
1691679181.0530074-CDS-H-elongata_contig14250:974..10821691679181.0530074-CDS-H-elongata_contig14250:974..1082Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 975..1082 -
1622929845.9074485-CDS-H-elongata_contig14250:1712..17721622929845.9074485-CDS-H-elongata_contig14250:1712..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 1713..1772 -
1691679181.0640337-CDS-H-elongata_contig14250:1712..17721691679181.0640337-CDS-H-elongata_contig14250:1712..1772Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 1713..1772 -
1622929845.919741-CDS-H-elongata_contig14250:2582..26901622929845.919741-CDS-H-elongata_contig14250:2582..2690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 2583..2690 -
1691679181.0717475-CDS-H-elongata_contig14250:2582..26901691679181.0717475-CDS-H-elongata_contig14250:2582..2690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 2583..2690 -
1622929845.9323175-CDS-H-elongata_contig14250:5159..52421622929845.9323175-CDS-H-elongata_contig14250:5159..5242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 5160..5242 -
1691679181.0796146-CDS-H-elongata_contig14250:5159..52421691679181.0796146-CDS-H-elongata_contig14250:5159..5242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 5160..5242 -
1622929845.9450338-CDS-H-elongata_contig14250:5803..59361622929845.9450338-CDS-H-elongata_contig14250:5803..5936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 5804..5936 -
1691679181.0877726-CDS-H-elongata_contig14250:5803..59361691679181.0877726-CDS-H-elongata_contig14250:5803..5936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 5804..5936 -
1622929845.9659865-CDS-H-elongata_contig14250:6459..66211622929845.9659865-CDS-H-elongata_contig14250:6459..6621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 6460..6621 -
1691679181.0963056-CDS-H-elongata_contig14250:6459..66211691679181.0963056-CDS-H-elongata_contig14250:6459..6621Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 6460..6621 -
1622929845.980327-CDS-H-elongata_contig14250:7701..79621622929845.980327-CDS-H-elongata_contig14250:7701..7962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 7702..7962 -
1691679181.1053267-CDS-H-elongata_contig14250:7701..79621691679181.1053267-CDS-H-elongata_contig14250:7701..7962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14250 7702..7962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14250.2940.1prot_H-elongata_contig14250.2940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14250 975..7962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14250.2940.1

>prot_H-elongata_contig14250.2940.1 ID=prot_H-elongata_contig14250.2940.1|Name=mRNA_H-elongata_contig14250.2940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=305bp
PFQPQASTSGRFFGIQDTFTGLAIIVNTNRALLSKNLKPGEPNGRHRDVS
VVANNGTRDFGDLVAGLEGCTANVRFDERRDDFNVLQSTRIRLKVTGNTA
AVELDARNTGRWRRCVTLAHLDMPSDWAAKSNIGMIAQTSEKTNNHDMLS
LRLYTEAQEAWEVDTYDEDEDELDALVHHMEHELFDVHDSLQETIETLRG
AEEQAEKRLADLEESLSKHVMEALETRVAKLEVQMQSSVTKTLSKHVDKV
YDQLESDVSGKLSERVGEMSASWRWPFYGLLGVVLGMVAVSLSKYKQLKK
QHLL*
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mRNA from alignment at H-elongata_contig14250:975..7962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14250.2940.1 ID=mRNA_H-elongata_contig14250.2940.1|Name=mRNA_H-elongata_contig14250.2940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6988bp|location=Sequence derived from alignment at H-elongata_contig14250:975..7962- (Himanthalia elongata Himel1 dioecious)
CCTTTTCAACCACAGGCCTCCACGTCCGGGCGCTTCTTCGGTATCCAGGA
TACGTTTACGGGGTTGGCTATCATCGTGAACACCAACCGCGCCCTGCTCT
CGAAGAACCTCAAGCCCGGAGAGCCGAACGGAAGACACAGAGACGTGTCC
GTGGTGGCGAACAACGGGACGAGGGACTTCGGCGACCTCGTGGCTGGGCT
GGAGGGATGCACGGCGAACGTGAGGTTCGACGAACGCCGGGACGACTTCA
ACGTCTTGCAGGTGATGGGATGGGATGGGATGGGAATATATGGGGGTGCA
GGCAAGAGCACTCTTGTCTTGTGTGGTGAATACGTTCGTTATTTCTTTGG
TTTCTCGTTGCAATTGCTGGGGGGGTTTTTCGCTTTTGCTGTTGCCGTTA
ATGTAGTGTGTAAGGTTGCGAATGCTAAAGATCTTGAAGTGTTACGGTGT
TACGGCCATGATCCAGGACGGCTGGCTGGAAATATCAGCACTGCAGATTA
GCTGACGGAGGCATGGATTGGTGGGGGCGTGGATCGCGTGCGAGGGTGGA
TAGATGAACGTCGTGATGGAATGATCGATGGATGGGGTGTATGGACGGAT
GGATCGATCGATAGTTTTTCGATGATGTACATAATCATTCCACGAGTGGA
TCATATCCATGCCATGCCGTACGCGCGGAATGCCAGTCTAAGGAGTTTGT
ACTGGAAGGGTCTGGCGTAGAAAATGGTTTAAGAGAGAAGGGAGAGGGGT
TGTTGGCAACCCACGAGGAGTATAAGTGGTGTTTTTGTTCTCGTTTCTGT
GGGAGGCAGATCTGTAACGCCTCTAGACCTGTACCGTATGTATTACACCT
TGCGTTTGTCATAAATGGTTCGTCTCGGGAGAGTAAGACCGTAGACTAAT
ACTATGTATGTCGCGAGGTAGGTATCGTATCTTAGAGTGAGTATGTGTCT
TGTCTGAGTCTGGTTTATGCCTTCACCCAAGTAAATAACAAAACGATAGA
GAGAGGAAATCCGACCAAAACAAAAACGCTTTCCCAGAATATGCGGTATG
CGCATGAGCCGTGGATGTATTTCGTCGTTCTTGCGCAGCGGTGAACTTGA
AGTCACGTCCTGACCCTCGGTCTACGTATCCCGTATAATCCCATCCCCTT
ACAAGTGTGTGGTGTATCCATGTACTCGTCCCGATCCGTTTTCACCCTCT
GTCCCATCACATTCCATCATCCACCGTCCGTTACTTACCGTGTTCCGCAT
ACTCCAACCTCATTCCACTCTGTCCCACGCATCTACTACCCCCCCGGGGC
GAATCGAATCGACTCGACTTGACGCGATGGTCCCGGCGAAGTCGACGCGC
ATCCGCCTCAAAGTGACGGGGAATACAGCTGCCGTGGAGCTGGATGCGCG
CAACACCGGGCGATGGCGGCGCTGCGTGACCCTGGCTCACCTAGACATGC
CATCGGACTGGGCCGCCAAGTCGAACATCGGCATGATCGCGCAGACTTCC
GAGGTGCGCGCGATCGGGGAGATAGGAATTATGCCTTGATCGATCGTTGT
TGGGCGTGCATGTGGTGTGTGGAGGCGTTTCGGGGGCAGCGGGGCGTGCT
CAATTTCTGCGTCCTTAAGCTGTTATGTCATTGAGGGGTGGAGTGAACAA
CACCCATACGAATGATTCATTGCCGCATGTGTATGAAAGCATTTCGCGGG
GTGGGTAAAGGAAATAAAAGGGCCTTCTATAGCATAATTTTAAGAAACGC
CTCCAAGGCACTACGCATGTGATAGAGTGCTGTTGGTCATATTTTCCTCG
CGCTTTTAATAATGTGTGTGTGTGTTTACCCGACATGACACATGGTAGAC
GACCTTTTTTATTTATTATAATTATTACTAATATTATTGCTTTTGTTATT
TATTGTTATTAATATTATTATTCATTCGAGTTTTTACGAAGGGCGTACGA
CGACCGCGAAGTGTCTATTTTCCTCAAAAGTAATACCATTATGCCATTAT
ATATTCGACACTTGGTTATAAAACAGAAAACTAACAACCACGACATGCTG
AGCTTGCGGCTGTATACTGAAGCTCAAGAGGCGTGGGAGGTGGACACCTA
CGATGAGGACGAGGACGAGCTTGATGCCCTCGTTCACCACATGGAGCACG
AGCTCTTTGGTGAGTTGTGAACACTCTTTCGAGCTTTATCCAAGTGTTTT
TTTGTCACCTTGCGGTATTTTTTGCTCTCCAGTGCTCCCTCTTTTCATTT
TTCTTCTCTCTCTGTCATAGTCTCTTTTTAGAAGAACCAAGTATTTTAGA
GCTTAACCGAGGTACTCTCTCTTCCATACACACATATACACATGCACTCT
ATCCCCAACTGTTTTCGTATCTTCCTCTGTATCCTGATATATGTCAACTC
TTACTATACTAAATAATATATGTTAGATATCAACGTTCATTCGGTGAGCC
ATTTATTCTCTATAGGCCCATTATACTTATGTATCGAGAAAATCCCAGTT
CGTGTGACTGCACCGAGATTCGAACTCACGCCCCAACAACGGAAGGTTTC
GAGGTTACCAACTGAACCATCGGGGCGACCGGTCCAGAAACTGTATATCA
GAGGGGGGGAGCGGTCATTAGCGTGTAGAGCGTGGGGTGTGAGAAAGTAT
AAAGTCATGAGTGCATGTTTTGTTTTTTGTTTTTCTTCCATGATGATATT
CTTGCATCCCTCCCTCGCAGACGTCCACGACAGCCTCCAGGAGACGATCG
AAACCCTCAGAGGGGCGGAGGAACAGGCCGAGAAACGCTTGGCAGATCTC
GAGGTACGTGTTGGTTGTGTCTGTGAGTGTATATATTTATGAAATTGCAC
ATAACCGCACAATATGACCATGTCATGCTATATAGTCATTCTGGGCTATG
GAAATACCCGTGCATTGCACAACAACTTCTCTCCACATTACCACCGGCTC
TCGGGCCGGAACACCACTTCCTCGACATCAGCTACAACGCGCTTCCCGGA
GAAAAATATCGGACGAAAACGTGGGAAAGGATGGACATGCTTGTCCCCCT
CCAACACTTTGGTAAAAGCTATTATAGTCGCTCGCCACTTGGTTCAGAAA
ATAGAGAGGGGAATTCGATAAACAAGAAGAACTACGGCCGACTCTCCTTG
TACCCTCCCCATCCAAACCCGACAATCTCGCCAACGTACTGCAGCAATGG
TGTCGTCATTACGCCCCCCCCCCCATCCCCTGTTAACATCCAATCGGTGC
GGCTCCTTCCCGATTACACCCGCACATATTTCCTTTTCTTCGTAAGAAAA
CCCCCGCAACAAATCATAGGGCCCGGGGTTGAACACCAACCGTAAGTATT
TTTCTGGGCGCCAATCTAGAGGGTAAGGGCAAGGAGAGAGTCAAGGGTAA
AGCTAGTCGGATAGGGTCTGCGCTCGTGTGTGTGTACACGCCGGAACGCA
CAGCATCGTGGGCGAAAACTCCCCGAGTCCACACGATTTGCGCTTTATTT
TCGCACTGTGTATGGTATATGGTATAATATAGTAGTGTGTGGTGATGACG
TCATCACATGTACCAGAGTATGGATCAACCCGATAAGGTTGCCAATCCTG
CTTGTGGTCAGGTGGAGAGGAGGGGGGGGAGGGGTCGTGTCCCCGTTTTC
CCATGAAATTTGGTCACCCATGCTGAGTCTGGTATATTTTTAGCGGACTA
TAGAGTAGTGTGTAGTGTACTAGTGCTGTTGTAGCTCTCACGTTATTATG
CTGAGTGGGGCAGCTATTTTCCCAATAACATCGCTTGTGGTTCGATAAAC
AGAGAAGGGAAACACACACACAAACACACATCGTGGTGACAGATGAGCCC
CAGTTTTTTCCAAGGGGTGGTACAGGTGGGAGCGAACACGGGAAAGATGG
TATCGCGAACCGTAACCCGCATTCACAACCGCGAGACCCTACGCCCCAGC
GAAAGCGTGACGTCATGCGGATGACCAAAGCCCAAGAGCGGGATCGGGGA
GGGGGAAAGGGAGGCAAAGAAGCGTAAAACGGTAGAAAACGGGGGGAAAT
TGGGTAGCAGTCGTAAAAAGGGTGGATGGGAGAACGTTAGTCCAATAAGC
GCCGATCGAAGCTATGTAGTGAACAAGGAAGCAGCAAAAAAAGCGCAAGG
TTTAGATGTCTTATGATAGATACGAAATGTAGAGAGGAGATGTCTCCTTT
GTCACGTCTGATCAGAGGTTTTCGTATCAAAAATCCAAATATGATTGATC
CCCCCATAGTTAGGACCAATGCGTGTGGTCTAGAATAACTAGCATGACAG
GGCCGGATTGCGCGGTTATGTGCAACATCATATAAATACAGAGACACTAA
AGTGTCAGGAAAATAAAACCCCACAAATCACAAACTGCGCCAATCCATGT
ACTGGTGTTCCTCAAGAGTAAAGGGATGTACAGTTATCGTGGTAAATATA
GGATGGGGTTGGCGTTACTGCAAGAGGAGGGAAAGGAAGTGTGCGAAATA
CCTCATTCGGTTATTTTTATTTAAAAGACTTTAGGCACCTTCTTGTCACC
GTAAGTGCAATCCAGGGGACCAACTATCAGAAAGCAGGAATAAGCATTAA
CAATAGGAATAATAAGCAGGAATAAGCAGAACAATGGTAACAATAATGAT
GTTAGTGTTGTTGTTGTTTATTTATTTAACTGTTGCTTGTCTTCTAGGGT
CCGTCCGTCCGTCCGTTCCTTTGACCCACCTTTATCTAGCAGTATCGTGG
ACCGTTATCGATCGACCTGGAGCCCGCCGCGCGTCGCTTATGTGGCCCTT
CAATATTATCACTGCTGATGTACACGACCCACTTATCTCAGGCCCCGTCT
CGATTATTGGGGTTGAGATTGCCGTCGGTTATTACCGTCGGTTGTTTGCT
GATTACGAAGTAAGGATTTGCATTCAGGCAAAAGCAAAGTTTCGCCATGT
CACATTTTCGTCGTAAATGTATGAATAGTATTCTCTGTTGAGCCCTTTCC
TTTTTATTAAGTTACATCAGACCGCCATCAGACCGACCAAACCAGCATGA
CACGTAAGCAGGCGCCACACCGACTTTGCGCTCCTCCGCCCCCTTGTAGA
GAGCTATATTGACCCTGTCCTATTCACGTTGCTTGCGCAACCACGCCGGA
CTATCACTACAACTCCCCCTCCTGCCCCCGCTGCCCCACCTCTGGGTGTA
ACACTCCGTGCCGTTGACGTTTTGAATGTCGCCACGGCCCCGCCCCCCTC
TCCCCCTTTTCTATCTCCTTAGGAATCCCTCAGCAAGCACGTGATGGAGG
CATTGGAGACCAGGGTGGCAAAGCTTGAGGTGCAGATGCAGAGCAGCGTG
ACCAAGACGCTCAGCAAACACGTCGACAAGGTACAAAACACCAGACGAGG
CTAGACTAGACAGTACTCTAGTGTACTTTACAGTACTTCCCATACACCAC
ATTATACAAATAATAGACTATACTCTATCACACACTACATTGCCCTATAC
AATATGCCTATATAGCTACATTACACACTGCCCTAATATTTTAGTAATGG
CGGAATTATAATTATAATTATCAGATTAGCAGTAGCAGCCTGTGGTTACC
CGGGGTAGAAATGTGTGGGAAAACACCATCCAAAATAAAAACGTACTAAT
AAGACCTACCCTCGATACAAAAGGACCCCTGGATTGCACCTCTCACGGCG
CTTAAGAAGGTGTGGATGTTCGAAAGGTTGGGATGAGATCAAGGTTTTAA
AAATAAAAATGCTACTCGGGAAAATAGATCTCTTTCCAAGAAAGAAAGAA
AGAAAACAGAGGGCTTGGCTGAGTTCATAGTTAAAAAAGAGAACACTGTC
GTGGTGATTAAGGAAGAACTGTCTGTGGCTTTCGGGACGCATGCCTAGCG
AAGAACGATTGAAAGAATAGCCGTATTAGCGATGACCGTTGCCATCCATC
CGTATACATTGGTGCTAGATGGTTATCACTGGGCTGTTACTGCGGATGGT
TACGAGGATGGCACAAAAAAATCGTACGCCATTCTTGTTCCTCTACGCCC
GGTGTTGCCTCTCTCCTGATTCTCTCTCGGGGAGGGAGGAAAAATGCATG
TTTTGCTACCTCCTTCATTCTCCTCCCAAAACACGCGCGCTTTGCGACCT
CCCCTTGTCCGTCTTTTCCTCCGTCCGTCCGTCTGTCCAGGTGTACGACC
AGCTCGAGTCGGACGTAAGCGGGAAGCTCTCCGAGCGTGTTGGTGAAATG
GTGAGCAGGTTGATCGAATCAGCCTAGGCGCTCGCGTCCCCCCCCCCGAC
ACTCTGTGGAACTGTTCCGCGTCTGCGCGCATTTATGATTATATTATATA
TATATATATATTCAGTGTATGTATGTCTATAAATATTTTTCTGCTGATGC
TCTAATATTATTGATAGCGCCGGTGTCGACTGATGACGTCAGCCCCCAAG
CTGCCGAAGTGTGCCTCATGTCGTCTAGAGAGCACCGGTATATAGTACAA
GAAGAGGGCGATGAGCTCTTGAAACGCGACGTGGACGAAGCTTGCCATGC
CTCGACCGGAAAGCATCGACGACGCATAAGCAAGATCGTTCCCCGCTCCC
TGTCTCAATAGAAAAACGAGAGATGGAAATACCAACCCCATCTTGGGCGT
GCGCGCGCGCGAGTGTGTGTTTTTGTTTGTTTGTATGCGCGGCGTTTTGC
GAGAATCAGCCTTGTTTTTGTCGTCCAACTCCCTCCTCCCGCTGCCTGCA
CCTTCCGCCCGTCCGTATTTCCGCCTCTATCTTGTCTGCCTTTCCCTTCT
CTCTTTCTCTCTCTCCCTCTCCCTCTCCCTTACCCTCCCTCCTCCCATGA
ACCGTGGACGTGGACGTGGACAATTCGAAGAGTGCGTCTTGGCGGTGGCC
TTTTTATGGGCTGCTAGGGGTGGTGCTGGGTATGGTGGCGGTCTCTCTCT
CCAAGTACAAGCAGTTGAAAAAGCAGCATCTACTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14250:975..7962-

>mRNA_H-elongata_contig14250.2940.1 ID=mRNA_H-elongata_contig14250.2940.1|Name=mRNA_H-elongata_contig14250.2940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1830bp|location=Sequence derived from alignment at H-elongata_contig14250:975..7962- (Himanthalia elongata Himel1 dioecious)
CCTTTTCAACCACAGGCCTCCACGTCCGGGCGCTTCTTCGGTATCCAGGA
TACGTTTACGGGGTTGGCTATCATCGTGAACACCAACCGCGCCCTGCTCT
CGAAGAACCTCAAGCCCGGAGAGCCGAACGGAAGACACAGAGACGTGTCC
GTGGTGGCGAACAACGGGACGAGGGACTTCGGCGACCTCGTGGCTGGGCT
GGAGGGATGCACGGCGAACGTGAGGTTCGACGAACGCCGGGACGACTTCA
ACGTCTTGCAGCCTTTTCAACCACAGGCCTCCACGTCCGGGCGCTTCTTC
GGTATCCAGGATACGTTTACGGGGTTGGCTATCATCGTGAACACCAACCG
CGCCCTGCTCTCGAAGAACCTCAAGCCCGGAGAGCCGAACGGAAGACACA
GAGACGTGTCCGTGGTGGCGAACAACGGGACGAGGGACTTCGGCGACCTC
GTGGCTGGGCTGGAGGGATGCACGGCGAACGTGAGGTTCGACGAACGCCG
GGACGACTTCAACGTCTTGCAGTCGACGCGCATCCGCCTCAAAGTGACGG
GGAATACAGCTGCCGTGGAGCTGGATGCGCGCAACACCGGGCGATGGCGG
CGCTGCGTGACCCTGGCTCACCTAGACATGCCATCGGACTGGGCCGCCAA
GTCGAACATCGGCATGATCGCGCAGACTTCCGAGTCGACGCGCATCCGCC
TCAAAGTGACGGGGAATACAGCTGCCGTGGAGCTGGATGCGCGCAACACC
GGGCGATGGCGGCGCTGCGTGACCCTGGCTCACCTAGACATGCCATCGGA
CTGGGCCGCCAAGTCGAACATCGGCATGATCGCGCAGACTTCCGAGAAAA
CTAACAACCACGACATGCTGAGCTTGCGGCTGTATACTGAAGCTCAAGAG
GCGTGGGAGGTGGACACCTACGATGAGGACGAGGACGAGCTTGATGCCCT
CGTTCACCACATGGAGCACGAGCTCTTTGAAAACTAACAACCACGACATG
CTGAGCTTGCGGCTGTATACTGAAGCTCAAGAGGCGTGGGAGGTGGACAC
CTACGATGAGGACGAGGACGAGCTTGATGCCCTCGTTCACCACATGGAGC
ACGAGCTCTTTGACGTCCACGACAGCCTCCAGGAGACGATCGAAACCCTC
AGAGGGGCGGAGGAACAGGCCGAGAAACGCTTGGCAGATCTCGAGACGTC
CACGACAGCCTCCAGGAGACGATCGAAACCCTCAGAGGGGCGGAGGAACA
GGCCGAGAAACGCTTGGCAGATCTCGAGGAATCCCTCAGCAAGCACGTGA
TGGAGGCATTGGAGACCAGGGTGGCAAAGCTTGAGGTGCAGATGCAGAGC
AGCGTGACCAAGACGCTCAGCAAACACGTCGACAAGGAATCCCTCAGCAA
GCACGTGATGGAGGCATTGGAGACCAGGGTGGCAAAGCTTGAGGTGCAGA
TGCAGAGCAGCGTGACCAAGACGCTCAGCAAACACGTCGACAAGGTGTAC
GACCAGCTCGAGTCGGACGTAAGCGGGAAGCTCTCCGAGCGTGTTGGTGA
AATGGTGTACGACCAGCTCGAGTCGGACGTAAGCGGGAAGCTCTCCGAGC
GTGTTGGTGAAATGAGTGCGTCTTGGCGGTGGCCTTTTTATGGGCTGCTA
GGGGTGGTGCTGGGTATGGTGGCGGTCTCTCTCTCCAAGTACAAGCAGTT
GAAAAAGCAGCATCTACTCTAAAGTGCGTCTTGGCGGTGGCCTTTTTATG
GGCTGCTAGGGGTGGTGCTGGGTATGGTGGCGGTCTCTCTCTCCAAGTAC
AAGCAGTTGAAAAAGCAGCATCTACTCTAA
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