mRNA_H-elongata_contig142463.2938.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142463.2938.1
Unique NamemRNA_H-elongata_contig142463.2938.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A6H5KJY9_9PHAE (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY9_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.700e-27
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVNW 192
            +DNPDQRVTADA+AL  AFA+V+H T+V PGL+ FYTWYLV MFGW APVACY+YF+VAS +NW
Sbjct:  268 IDNPDQRVTADAEALVAAFATVLHETLVAPGLVAFYTWYLVSMFGWVAPVACYVYFIVASAINW 331
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.640e-27
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVNW 192
            +DNPDQRVTADA+AL  AFA+V+H T+V PGL+ FYTWYLVGMFGW APVACY+YF+VAS +NW
Sbjct:  258 IDNPDQRVTADAEALVAAFATVLHETLVAPGLVAFYTWYLVGMFGWVAPVACYVYFIVASAINW 321
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A836CDC0_9STRA (ABC transporter transmembrane region 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDC0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.640e-17
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR+ +DA ALT A   V+  T+VVPGL+ +YTWY+  +FGW AP ACY YF +A  +N
Sbjct:  270 VDNPDQRIVSDAAALTTAMGEVIQKTLVVPGLLAYYTWYVAALFGWVAPAACYAYFALAGALN 332
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A1Y2GUI1_9FUNG (ABC transporter transmembrane region 2-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GUI1_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 2.710e-8
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR+T D D ++++   +V   I++P LIVFYT+    M GW  PV  Y +F++++I++
Sbjct:  204 VDNPDQRITQDIDKMSESMRKMVEDLIIIPLLIVFYTYQCWMMTGWIGPVCIYGFFLLSTIIS 266
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A6A4RNT5_SCOMX (ABC transmembrane type-1 domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4RNT5_SCOMX)

HSP 1 Score: 55.1 bits (131), Expect = 3.280e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++ +   GW  PV+ + YFVV +I N
Sbjct:   98 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLTYYTYHCLHSTGWIGPVSIFGYFVVGTIAN 160
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A8D3BS93_SCOMX (ABC transmembrane type-1 domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3BS93_SCOMX)

HSP 1 Score: 55.1 bits (131), Expect = 3.280e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++ +   GW  PV+ + YFVV +I N
Sbjct:   99 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLTYYTYHCLHSTGWIGPVSIFGYFVVGTIAN 161
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A2U9CTQ2_SCOMX (Putative ATP-binding cassette sub-family D member 4 isoform 2 n=10 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9CTQ2_SCOMX)

HSP 1 Score: 55.1 bits (131), Expect = 3.310e-7
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++ +   GW  PV+ + YFVV +I N
Sbjct:  140 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLTYYTYHCLHSTGWIGPVSIFGYFVVGTIAN 202
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A4W6D0A3_LATCA (ATP binding cassette subfamily D member 4 n=30 Tax=Percomorphaceae TaxID=1489872 RepID=A0A4W6D0A3_LATCA)

HSP 1 Score: 55.1 bits (131), Expect = 3.310e-7
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR++ DA+ L K  +++    IV P  + +YT++     GW  PV+ + YFVV +I N
Sbjct:  140 IDNPDQRISQDAERLCKQMSTMASRLIVSPFTLAYYTYHCFYSTGWIGPVSIFAYFVVGTIAN 202
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BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A669BBT9_ORENI (ABC transmembrane type-1 domain-containing protein n=2 Tax=Oreochromis TaxID=8139 RepID=A0A669BBT9_ORENI)

HSP 1 Score: 54.7 bits (130), Expect = 4.470e-7
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR++ DA+ L K  +S+    I+ P  + +YT++     GW  PV+ + YFV+ +I N
Sbjct:  140 IDNPDQRISQDAERLCKQMSSMASRLIISPFTLTYYTYHCFHSTGWIGPVSIFGYFVIGTIAN 202
[Close]
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Match: A0A444U441_ACIRT (ATP-binding cassette sub-family D member 4 (Fragment) n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444U441_ACIRT)

HSP 1 Score: 54.7 bits (130), Expect = 4.500e-7
Identity = 21/63 (33.33%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPVACYLYFVVASIVN 189
            +DNPDQR++ DA+   K  +++    ++ P  +V+YT+      GW  PV+ ++YF++ ++VN
Sbjct:  126 IDNPDQRISQDAERFCKQMSTMASKLLISPFTLVYYTYQCFHSTGWKGPVSIFIYFIIGTVVN 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142463.2938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJY9_9PHAE3.700e-2773.44ABC transmembrane type-1 domain-containing protein... [more]
D7FQX4_ECTSI5.640e-2775.00ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
A0A836CDC0_9STRA1.640e-1755.56ABC transporter transmembrane region 2-domain-cont... [more]
A0A1Y2GUI1_9FUNG2.710e-841.27ABC transporter transmembrane region 2-domain-cont... [more]
A0A6A4RNT5_SCOMX3.280e-739.68ABC transmembrane type-1 domain-containing protein... [more]
A0A8D3BS93_SCOMX3.280e-739.68ABC transmembrane type-1 domain-containing protein... [more]
A0A2U9CTQ2_SCOMX3.310e-739.68Putative ATP-binding cassette sub-family D member ... [more]
A0A4W6D0A3_LATCA3.310e-739.68ATP binding cassette subfamily D member 4 n=30 Tax... [more]
A0A669BBT9_ORENI4.470e-738.10ABC transmembrane type-1 domain-containing protein... [more]
A0A444U441_ACIRT4.500e-733.33ATP-binding cassette sub-family D member 4 (Fragme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142463contigH-elongata_contig142463:209..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3.8e-22
Seed eggNOG ortholog2880.D7FQX4
Preferred nameABCD2
KEGG koko:K05675,ko:K05676,ko:K05677,ko:K05678,ko:K15628
KEGG TC3.A.1.203,3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759,KOG0064@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal anchor
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.779217-CDS-H-elongata_contig142463:208..4031622929845.779217-CDS-H-elongata_contig142463:208..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142463 209..403 -
1691679181.020481-CDS-H-elongata_contig142463:208..4031691679181.020481-CDS-H-elongata_contig142463:208..403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142463 209..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142463.2938.1prot_H-elongata_contig142463.2938.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142463 209..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142463.2938.1

>prot_H-elongata_contig142463.2938.1 ID=prot_H-elongata_contig142463.2938.1|Name=mRNA_H-elongata_contig142463.2938.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
LDNPDQRVTADADALTKAFASVVHATIVVPGLIVFYTWYLVGMFGWTAPV
ACYLYFVVASIVNW*
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mRNA from alignment at H-elongata_contig142463:209..403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142463.2938.1 ID=mRNA_H-elongata_contig142463.2938.1|Name=mRNA_H-elongata_contig142463.2938.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig142463:209..403- (Himanthalia elongata Himel1 dioecious)
TTGGACAACCCGGACCAGCGGGTCACGGCCGACGCCGATGCCCTCACGAA
GGCTTTCGCGTCTGTGGTTCACGCGACCATTGTCGTCCCGGGACTGATCG
TCTTCTACACGTGGTACCTGGTGGGCATGTTCGGTTGGACGGCGCCGGTC
GCCTGCTACCTTTACTTCGTGGTTGCGTCGATCGTGAACTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig142463:209..403-

>mRNA_H-elongata_contig142463.2938.1 ID=mRNA_H-elongata_contig142463.2938.1|Name=mRNA_H-elongata_contig142463.2938.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig142463:209..403- (Himanthalia elongata Himel1 dioecious)
TTGGACAACCCGGACCAGCGGGTCACGGCCGACGCCGATGCCCTCACGAA
GGCTTTCGCGTCTGTGGTTCACGCGACCATTGTCGTCCCGGGACTGATCG
TCTTCTACACGTGGTACCTGGTGGGCATGTTCGGTTGGACGGCGCCGGTC
GCCTGCTACCTTTACTTCGTGGTTGCGTCGATCGTGAACTGGTGATTGGA
CAACCCGGACCAGCGGGTCACGGCCGACGCCGATGCCCTCACGAAGGCTT
TCGCGTCTGTGGTTCACGCGACCATTGTCGTCCCGGGACTGATCGTCTTC
TACACGTGGTACCTGGTGGGCATGTTCGGTTGGACGGCGCCGGTCGCCTG
CTACCTTTACTTCGTGGTTGCGTCGATCGTGAACTGGTGA
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