mRNA_H-elongata_contig142434.2937.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142434.2937.1
Unique NamemRNA_H-elongata_contig142434.2937.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5JRE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.590e-20
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD  L R+RWAR F  LLNT+SP ++ + T+ + QWP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:   15 IKDEDGKVLRDPTLTRQRWARWFHKLLNTRSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5K2N1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.480e-19
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IK+E G +LRD   IR+RWAR F  LLNTKSP ++ +  + + +WP   PL++ P++ E+  A+R +ANGKAVGPD +  EL K
Sbjct:  413 IKEENGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCEPLDVMPSLLEVEEAVRDMANGKAVGPDDLPAELIK 496
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5K0P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.980e-19
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD   IR+RWAR F  LLNTKSP ++ +  + + +WP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:   60 IKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 143
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.200e-19
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD   IR+RWAR F  LLNTKSP ++ +  + + +WP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:   59 IKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 142
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.810e-19
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD   IR+RWAR F  LLNTKSP ++ +  + + +WP   PL+  P+++E+  A+R +AN KAVGPD +  EL K
Sbjct:   82 IKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIK 165
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5LG55_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG55_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 7.010e-19
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD   IR+RWARCF  LLNTKSP ++ +  + + +WP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:   15 IKDEDGKVLRDPMFIRQRWARCFHKLLNTKSPTIDLHAADTVKRWPTCMPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5JP69_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP69_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.060e-19
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    4 KDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            KDE G +LRD   IR+RWAR F  LLNTKSP ++ +  + + +WP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:   16 KDEDGEVLRDPTFIRQRWARWFLKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5L9I3_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.460e-18
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNT-KSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD   IR+RWAR F  LLNT KSP ++ +  + + +WP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:   15 IKDEDGKVLRDPTFIRQRWARWFHKLLNTNKSPTIDQHAADKVKRWPTCVPLDDTPSLLEVEEAVREMANRKAVGPDDLPAELIK 99
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.460e-18
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD  L R+RWAR F  LLNTKSP ++ + T+ + QWP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:   15 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.480e-18
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTPLEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK 252
            IKDE G +LRD  L R+RWAR F  LLNTKSP ++ + T+ + QWP   PL+  P++ E+  A+R +AN KAVGPD +  EL K
Sbjct:  313 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 396
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142434.2937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE2_9PHAE1.590e-2050.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K2N1_9PHAE2.480e-1948.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0P7_9PHAE2.980e-1948.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXZ7_9PHAE3.200e-1948.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L012_9PHAE4.810e-1948.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LG55_9PHAE7.010e-1950.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JP69_9PHAE7.060e-1948.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L9I3_9PHAE1.460e-1848.24Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KE31_9PHAE1.460e-1851.19Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE1.480e-1851.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142434contigH-elongata_contig142434:1392..1643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.7367218-CDS-H-elongata_contig142434:1391..16431622929845.7367218-CDS-H-elongata_contig142434:1391..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142434 1392..1643 +
1691679181.0098953-CDS-H-elongata_contig142434:1391..16431691679181.0098953-CDS-H-elongata_contig142434:1391..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142434 1392..1643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142434.2937.1prot_H-elongata_contig142434.2937.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142434 1392..1643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142434.2937.1

>prot_H-elongata_contig142434.2937.1 ID=prot_H-elongata_contig142434.2937.1|Name=mRNA_H-elongata_contig142434.2937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
IKDEGGILLRDAELIRERWARCFQTLLNTKSPELEPNITEGLDQWPENTP
LEIQPTMQEMTNAIRSLANGKAVGPDGVSIELFK
back to top

mRNA from alignment at H-elongata_contig142434:1392..1643+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142434.2937.1 ID=mRNA_H-elongata_contig142434.2937.1|Name=mRNA_H-elongata_contig142434.2937.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig142434:1392..1643+ (Himanthalia elongata Himel1 dioecious)
ATCAAAGACGAGGGCGGCATACTCCTGAGGGACGCTGAACTTATCCGCGA
ACGATGGGCCCGGTGTTTCCAAACCCTCCTTAACACGAAATCGCCGGAGC
TCGAGCCGAATATCACTGAAGGCCTCGACCAGTGGCCGGAGAACACGCCG
CTAGAAATCCAGCCGACGATGCAGGAAATGACAAACGCCATCCGCTCGTT
AGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCAATTGAACTGTTCA
AG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig142434:1392..1643+

>mRNA_H-elongata_contig142434.2937.1 ID=mRNA_H-elongata_contig142434.2937.1|Name=mRNA_H-elongata_contig142434.2937.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig142434:1392..1643+ (Himanthalia elongata Himel1 dioecious)
ATCAAAGACGAGGGCGGCATACTCCTGAGGGACGCTGAACTTATCCGCGA
ACGATGGGCCCGGTGTTTCCAAACCCTCCTTAACACGAAATCGCCGGAGC
TCGAGCCGAATATCACTGAAGGCCTCGACCAGTGGCCGGAGAACACGCCG
CTAGAAATCCAGCCGACGATGCAGGAAATGACAAACGCCATCCGCTCGTT
AGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCAATTGAACTGTTCA
AGATCAAAGACGAGGGCGGCATACTCCTGAGGGACGCTGAACTTATCCGC
GAACGATGGGCCCGGTGTTTCCAAACCCTCCTTAACACGAAATCGCCGGA
GCTCGAGCCGAATATCACTGAAGGCCTCGACCAGTGGCCGGAGAACACGC
CGCTAGAAATCCAGCCGACGATGCAGGAAATGACAAACGCCATCCGCTCG
TTAGCGAACGGAAAGGCTGTTGGACCGGACGGAGTTTCAATTGAACTGTT
CAAG
back to top