mRNA_H-elongata_contig142431.2934.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142431.2934.1
Unique NamemRNA_H-elongata_contig142431.2934.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: D8LU43_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU43_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.190e-11
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQV 108
            ++VNGGYDFPGSNSGIDLFALTGWLPEQ+
Sbjct:  428 LKVNGGYDFPGSNSGIDLFALTGWLPEQI 456
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BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: D8LU45_ECTSI (Similar to calpain 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU45_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.990e-11
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQV 108
            ++VNGGYDFPGSNSGIDLFALTGW+PEQV
Sbjct:  438 LKVNGGYDFPGSNSGIDLFALTGWIPEQV 466
[Close]
BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: A0A1Y2C258_9FUNG (Cysteine proteinase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C258_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 5.570e-11
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 CNLNVLLVQVNGGYDFPGSNSGIDLFALTGWLPEQV 108
            C +    ++VNGGYDFPGSNSGIDL+ALTGW+PEQ+
Sbjct:  188 CIIEKAYMKVNGGYDFPGSNSGIDLYALTGWIPEQI 223
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BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: A0A7S2I542_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I542_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 9.630e-11
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQVR 111
            +++NGGYDFPGSNSGID+FALTGW+PEQ R
Sbjct:   53 MKLNGGYDFPGSNSGIDMFALTGWIPEQFR 82
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BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: A0A0M0JFV1_9EUKA (Calpain-7-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFV1_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQVR 111
            +++NGGYDFPGSNSGID+FALTGW+PEQ R
Sbjct:  157 MKLNGGYDFPGSNSGIDMFALTGWIPEQYR 186
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BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: A0A6G0XHZ1_9STRA (Calpain catalytic domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHZ1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.940e-10
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQV 108
            ++VNGGYDFPGSNSGIDLFALTGW+PE +
Sbjct:  409 LKVNGGYDFPGSNSGIDLFALTGWIPESI 437
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BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: R1CAW8_EMIHU (Calpain catalytic domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CAW8_EMIHU)

HSP 1 Score: 62.4 bits (150), Expect = 2.650e-10
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQVR 111
            ++VNGGYDFPGSNSGID+ ALTGW+PEQ+R
Sbjct:  221 MKVNGGYDFPGSNSGIDMHALTGWVPEQLR 250
[Close]
BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: A0A507FI34_9FUNG (Calpain catalytic domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FI34_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 2.650e-10
Identity = 23/29 (79.31%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQV 108
            +++NGGYDFPGSNSGIDL+ALTGW+PEQ+
Sbjct:  348 MKLNGGYDFPGSNSGIDLYALTGWIPEQI 376
[Close]
BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: R1CLM0_EMIHU (Calpain catalytic domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CLM0_EMIHU)

HSP 1 Score: 62.4 bits (150), Expect = 2.660e-10
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQVR 111
            ++VNGGYDFPGSNSGID+ ALTGW+PEQ+R
Sbjct:   27 MKVNGGYDFPGSNSGIDMHALTGWVPEQLR 56
[Close]
BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Match: W4G3V3_9STRA (Calpain catalytic domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3V3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 3.620e-10
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:   22 VQVNGGYDFPGSNSGIDLFALTGWLPEQV 108
            ++VNGGYDFPGSNSGIDLFALTGW+PE +
Sbjct:  434 LKVNGGYDFPGSNSGIDLFALTGWIPESL 462
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142431.2934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU43_ECTSI2.190e-1189.66Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU45_ECTSI2.990e-1189.66Similar to calpain 7 n=1 Tax=Ectocarpus siliculosu... [more]
A0A1Y2C258_9FUNG5.570e-1169.44Cysteine proteinase n=1 Tax=Rhizoclosmatium globos... [more]
A0A7S2I542_9EUKA9.630e-1180.00Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A0M0JFV1_9EUKA1.040e-1080.00Calpain-7-like protein n=1 Tax=Chrysochromulina to... [more]
A0A6G0XHZ1_9STRA1.940e-1082.76Calpain catalytic domain-containing protein n=2 Ta... [more]
R1CAW8_EMIHU2.650e-1080.00Calpain catalytic domain-containing protein n=2 Ta... [more]
A0A507FI34_9FUNG2.650e-1079.31Calpain catalytic domain-containing protein n=1 Ta... [more]
R1CLM0_EMIHU2.660e-1080.00Calpain catalytic domain-containing protein n=1 Ta... [more]
W4G3V3_9STRA3.620e-1082.76Calpain catalytic domain-containing protein n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142431contigH-elongata_contig142431:987..1100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog2880.D8LU43
Preferred nameCAPN7
KEGG koko:K08576
GOsGO:0000815,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0006082,GO:0006508,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009058,GO:0009268,GO:0009308,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010008,GO:0010565,GO:0010632,GO:0010634,GO:0012505,GO:0016020,GO:0016053,GO:0016787,GO:0016999,GO:0017000,GO:0017144,GO:0018130,GO:0019222,GO:0019538,GO:0019748,GO:0019752,GO:0019904,GO:0030334,GO:0030335,GO:0030653,GO:0030654,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031982,GO:0032787,GO:0032879,GO:0032991,GO:0033238,GO:0033240,GO:0033244,GO:0033246,GO:0034248,GO:0034250,GO:0034641,GO:0036452,GO:0040012,GO:0040017,GO:0042316,GO:0042318,GO:0042762,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043455,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046394,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051176,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051716,GO:0062012,GO:0062013,GO:0065007,GO:0070011,GO:0071214,GO:0071467,GO:0071704,GO:0072330,GO:0072338,GO:0072339,GO:0090541,GO:0097264,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0104004,GO:0140096,GO:1900196,GO:1900198,GO:1900376,GO:1900378,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:2000145,GO:2000147
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.5949628-CDS-H-elongata_contig142431:986..11001622929845.5949628-CDS-H-elongata_contig142431:986..1100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142431 987..1100 +
1691679180.9802003-CDS-H-elongata_contig142431:986..11001691679180.9802003-CDS-H-elongata_contig142431:986..1100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142431 987..1100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142431.2934.1prot_H-elongata_contig142431.2934.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142431 987..1100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142431.2934.1

>prot_H-elongata_contig142431.2934.1 ID=prot_H-elongata_contig142431.2934.1|Name=mRNA_H-elongata_contig142431.2934.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
CNLNVLLVQVNGGYDFPGSNSGIDLFALTGWLPEQVR*
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mRNA from alignment at H-elongata_contig142431:987..1100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142431.2934.1 ID=mRNA_H-elongata_contig142431.2934.1|Name=mRNA_H-elongata_contig142431.2934.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig142431:987..1100+ (Himanthalia elongata Himel1 dioecious)
TGTAATCTCAATGTTTTGCTGGTCCAGGTGAACGGCGGTTACGACTTTCC
GGGGAGCAACTCGGGGATCGACTTGTTCGCGCTGACAGGCTGGCTCCCGG
AGCAGGTACGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig142431:987..1100+

>mRNA_H-elongata_contig142431.2934.1 ID=mRNA_H-elongata_contig142431.2934.1|Name=mRNA_H-elongata_contig142431.2934.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig142431:987..1100+ (Himanthalia elongata Himel1 dioecious)
TGTAATCTCAATGTTTTGCTGGTCCAGGTGAACGGCGGTTACGACTTTCC
GGGGAGCAACTCGGGGATCGACTTGTTCGCGCTGACAGGCTGGCTCCCGG
AGCAGGTACGGTAGTGTAATCTCAATGTTTTGCTGGTCCAGGTGAACGGC
GGTTACGACTTTCCGGGGAGCAACTCGGGGATCGACTTGTTCGCGCTGAC
AGGCTGGCTCCCGGAGCAGGTACGGTAG
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