mRNA_H-elongata_contig142413.2933.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142413.2933.1
Unique NamemRNA_H-elongata_contig142413.2933.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: D8LIJ8_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIJ8_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.560e-29
Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPN----GGAGPGGDPFAGFG 213
            +KK YFQLAKKYHPDQNK+NPDAK KFQEVTEAYEVL   D R+RYDQFGHAGVDPN    GG G GGDPFAGFG
Sbjct:  124 VKKKYFQLAKKYHPDQNKDNPDAKAKFQEVTEAYEVLSDSDKRSRYDQFGHAGVDPNNAGAGGPGGGGDPFAGFG 198
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BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A485KL56_9STRA (Aste57867_8717 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL56_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.570e-20
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPGGDPFAGF 210
            IKK Y+++AKK+HPD NK++PDA +KF E TEA+E+LG +D R +YD FGHAGVDPNGG G GG+ F GF
Sbjct:   72 IKKKYYEMAKKFHPDTNKDDPDAAKKFAEATEAWEILGDDDKRQKYDTFGHAGVDPNGG-GMGGEDFHGF 140
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BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A7S2PMM8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMM8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.890e-20
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPG-GDPFAGF 210
            IKK YF+LAK+YHPD+NK+NP+A +KF+E T AYEVL  E  +  YD +GHAGVDPN  AG G GD FAGF
Sbjct:   33 IKKAYFKLAKEYHPDRNKDNPEAAEKFKEATAAYEVLSDEKQKELYDSYGHAGVDPNFQAGQGFGDGFAGF 103
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BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A067BW70_SAPPC (J domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BW70_SAPPC)

HSP 1 Score: 87.0 bits (214), Expect = 2.120e-20
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPG 189
            IKK Y++LAKK+HPD NK++P+A +KF E TEA+EVLG +D R +YD FGHAGVDPN G G G
Sbjct:   58 IKKKYYELAKKFHPDTNKDDPNAAKKFAEATEAWEVLGDDDKRQKYDTFGHAGVDPNAGGGDG 120
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BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A2D4BLU2_PYTIN (Chaperone DnaJ n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLU2_PYTIN)

HSP 1 Score: 92.0 bits (227), Expect = 3.220e-20
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNG-GAGPGGDPFAGF 210
            IKK Y+QLAKKYHPD NK++P+A +KF E TEA+EVLG +D R++YD FGHAGVDPNG G G G   F GF
Sbjct:   82 IKKKYYQLAKKYHPDTNKDDPEAAKKFAEATEAWEVLGDDDKRSKYDTFGHAGVDPNGFGGGGGPGDFQGF 152
[Close]
BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A6A4ZBV2_9STRA (J domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZBV2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.650e-20
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPGGD-PFAGF 210
            IKK Y+++AKK+HPD NK +PDA +KF E TEA+E+LG E+ R +YD FGHAGVDPNG  G GGD  F GF
Sbjct:   93 IKKKYYEMAKKFHPDTNKEDPDAAKKFAEATEAWEILGDEEKRQKYDTFGHAGVDPNGMGGGGGDGDFHGF 163
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BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A396ZW21_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZW21_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.700e-20
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPGGD-PFAGF 210
            IKK Y+++AKK+HPD NK +PDA +KF E TEA+E+LG E+ R +YD FGHAGVDPNG  G GGD  F GF
Sbjct:   67 IKKKYYEMAKKFHPDTNKEDPDAAKKFAEATEAWEILGDEEKRQKYDTFGHAGVDPNGMGGGGGDGDFHGF 137
[Close]
BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A6G0WGB0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGB0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.460e-20
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPGGDPFAGF 210
            IKK Y++LAKK+HPD NK++P+A QKF E TEA+E+LG ++ R +YD FGHAGVDPNGG G GG  F GF
Sbjct:   63 IKKKYYELAKKFHPDTNKDDPNAAQKFAEATEAWEILGDDEKREKYDTFGHAGVDPNGG-GMGGQDFHGF 131
[Close]
BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: UPI001C11A66B (molecular chaperone DnaJ n=1 Tax=Butyricicoccus intestinisimiae TaxID=2841509 RepID=UPI001C11A66B)

HSP 1 Score: 90.5 bits (223), Expect = 7.660e-20
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPGGDPFAGF 210
            IKK Y +LA+KYHPD NK+NP+A +KF+E+ EAYEVL   + R+RYDQFG AGVDPN GAG GG  F GF
Sbjct:   22 IKKAYRKLARKYHPDLNKDNPEAAEKFKEIGEAYEVLSDSEKRSRYDQFGFAGVDPNYGAGQGGAGFGGF 91
[Close]
BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Match: A0A1W0A654_9STRA (Chaperone protein dnaJ n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A654_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.330e-20
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFGHAGVDPNGGAGPG 189
            IKK Y++LAKK+HPD NK +P+A +KF E TEA+EVLG +D R +YD FGHAGVDPNGGAG G
Sbjct:   50 IKKKYYELAKKFHPDTNKEDPNAAKKFAEATEAWEVLGDDDKRQKYDTFGHAGVDPNGGAGEG 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142413.2933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ8_ECTSI4.560e-2980.00Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A485KL56_9STRA1.570e-2064.29Aste57867_8717 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2PMM8_9STRA1.890e-2064.79Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A067BW70_SAPPC2.120e-2065.08J domain-containing protein (Fragment) n=1 Tax=Sap... [more]
A0A2D4BLU2_PYTIN3.220e-2066.20Chaperone DnaJ n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A6A4ZBV2_9STRA3.650e-2063.38J domain-containing protein n=1 Tax=Aphanomyces as... [more]
A0A396ZW21_9STRA3.700e-2063.38Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0WGB0_9STRA7.460e-2064.29Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI001C11A66B7.660e-2065.71molecular chaperone DnaJ n=1 Tax=Butyricicoccus in... [more]
A0A1W0A654_9STRA9.330e-2068.25Chaperone protein dnaJ n=1 Tax=Thraustotheca clava... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142413contigH-elongata_contig142413:524..1442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score89.4
Seed ortholog evalue7.6e-16
Seed eggNOG ortholog582744.Msip34_1907
Preferred namednaJ
KEGG koko:K03686
GOsGO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141
EggNOG free text desc.ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
EggNOG OGs1MVMS@1224,2KKPJ@206350,2VHEH@28216,COG0484@1,COG0484@2
Ec32 ortholog descriptionHeat shock protein 40
Ec32 orthologEc-18_003360.1
COG Functional cat.O
Best tax levelNitrosomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.5299442-CDS-H-elongata_contig142413:523..6191622929845.5299442-CDS-H-elongata_contig142413:523..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142413 524..619 +
1691679180.9584653-CDS-H-elongata_contig142413:523..6191691679180.9584653-CDS-H-elongata_contig142413:523..619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142413 524..619 +
1622929845.5467558-CDS-H-elongata_contig142413:1325..14421622929845.5467558-CDS-H-elongata_contig142413:1325..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142413 1326..1442 +
1691679180.9705055-CDS-H-elongata_contig142413:1325..14421691679180.9705055-CDS-H-elongata_contig142413:1325..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142413 1326..1442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142413.2933.1prot_H-elongata_contig142413.2933.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142413 524..1442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142413.2933.1

>prot_H-elongata_contig142413.2933.1 ID=prot_H-elongata_contig142413.2933.1|Name=mRNA_H-elongata_contig142413.2933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
IKKNYFQLAKKYHPDQNKNNPDAKQKFQEVTEAYEVLGSEDSRARYDQFG
HAGVDPNGGAGPGGDPFAGFG
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mRNA from alignment at H-elongata_contig142413:524..1442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142413.2933.1 ID=mRNA_H-elongata_contig142413.2933.1|Name=mRNA_H-elongata_contig142413.2933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig142413:524..1442+ (Himanthalia elongata Himel1 dioecious)
ATTAAGAAAAATTACTTTCAGCTGGCGAAGAAATACCACCCCGACCAAAA
CAAGAACAACCCGGACGCAAAGCAAAAATTCCAAGAAGTCACAGAGGTGA
GAAAACGGTTGAAAACAAGCAGCGTAACCCTTAGCCTCCGCAAGCCCGCC
ACCGCTTAGGACATCACCATGATACCTCTAGCGGAAGCTGCGGGTAAATT
TCCCATGATCCTGTGCGCTGAGGGGCGGACGTCATGGGACTGGGCGGGAC
GTTATTGAAGGCACGGTATCAGTTGCGTTACACCGATAAACAGACAGTTG
AACAAGAGGGAGGAATGTGGCTGGGGTCGGCGGGCGGGCGGGCTAGTGTC
GGAGATGTCTGCTCTCGTCTTTCCCAGCGTTTGTCGTGATCCACGAATGG
GCAGGCGTCCGCTCGACGGGATAGGGGGGAGAGGAGACAGGACGCCTGGG
GGGGGGGCGAGGGGAGGCGTTTTCGGGACGCGATGGAGATAGTAAATGCA
TTGATTTTACTTGTGTTTTTTTTTCTTCTTTTGCCTTGCTTCTGCTTGAG
CTGTGTAGGGAAATACTATTACTAGTACGTTCCTTGATGACGCGCGGATA
CGACGCTGTATCCTTTTCGGGGAGCAGCCACTCTATTATCATCAGTCTCT
GCTATCGAGCGCGTGGGCTGGTGTGTCGTCATTGCGTGTGCCAACGCAAA
AACCGCGCCTTCCGCGCGTGGGGCGTTGCTTTTCTTCCTCCTTCCCTTCC
CTGTCCCTTCCCTGCTTCTATGATGGTAATTGCCATGGCGGCAACCTTAT
AGGCGTACGAGGTGCTGGGAAGTGAGGACTCGCGCGCTAGATACGACCAG
TTTGGGCACGCTGGCGTGGACCCCAACGGAGGCGCGGGACCAGGAGGGGA
TCCGTTCGCCGGCTTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig142413:524..1442+

>mRNA_H-elongata_contig142413.2933.1 ID=mRNA_H-elongata_contig142413.2933.1|Name=mRNA_H-elongata_contig142413.2933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig142413:524..1442+ (Himanthalia elongata Himel1 dioecious)
ATTAAGAAAAATTACTTTCAGCTGGCGAAGAAATACCACCCCGACCAAAA
CAAGAACAACCCGGACGCAAAGCAAAAATTCCAAGAAGTCACAGAGATTA
AGAAAAATTACTTTCAGCTGGCGAAGAAATACCACCCCGACCAAAACAAG
AACAACCCGGACGCAAAGCAAAAATTCCAAGAAGTCACAGAGGCGTACGA
GGTGCTGGGAAGTGAGGACTCGCGCGCTAGATACGACCAGTTTGGGCACG
CTGGCGTGGACCCCAACGGAGGCGCGGGACCAGGAGGGGATCCGTTCGCC
GGCTTCGGGGCGTACGAGGTGCTGGGAAGTGAGGACTCGCGCGCTAGATA
CGACCAGTTTGGGCACGCTGGCGTGGACCCCAACGGAGGCGCGGGACCAG
GAGGGGATCCGTTCGCCGGCTTCGGG
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