mRNA_H-elongata_contig142361.2931.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142361.2931.1
Unique NamemRNA_H-elongata_contig142361.2931.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: D7FGP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP8_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.420e-45
Identity = 90/149 (60.40%), Postives = 111/149 (74.50%), Query Frame = 1
Query:    1 LSHAGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNT---DKAAHGESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGTEENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREPRKP 438
            L+ AG+T+L+DAI  +CTLLE+W  +W  KA KRK  E R       D+A HG      E++P LR+VVLSDG DTKS+  AH+ C RLQK+G+IVDSITVGTE+N++LKCLSLATGGYAFHP TLR ALRLNELETVL +  R  ++P
Sbjct:  347 LTPAGNTKLFDAISEACTLLEKWQTEWVEKADKRKEEENRKRKAAGGDQANHG--PVPDEKRPVLRVVVLSDGKDTKSTISAHAVCGRLQKVGVIVDSITVGTEKNNQLKCLSLATGGYAFHPMTLRAALRLNELETVLLAGQRARQRP 493          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A813ANK4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ANK4_9DINO)

HSP 1 Score: 97.1 bits (240), Expect = 1.220e-20
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   10 AGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGT-EENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREP 429
            +GDT L+DA++ +   LE W +    +A                        A  KP LRI VLSDG DTKSS        RLQK GI++D++ VG+ E +D+L  L+  TGGY F PK+++EALRL+ELE VL    R P
Sbjct:  190 SGDTALYDAVEKAADALEAWQSKQDAEA------------------------ANSKPALRIYVLSDGADTKSSTPCWRVAKRLQKAGIVLDAVHVGSCEMDDQLHALAKCTGGYVFRPKSIQEALRLHELEVVLHGPDRAP 306          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A1Q9D1U5_SYMMI (Putative bifunctional E2/E3 enzyme R795 n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D1U5_SYMMI)

HSP 1 Score: 97.1 bits (240), Expect = 1.350e-20
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 1
Query:   10 AGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGT-EENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREP 429
            +GDT L+DA++ +   LE W +    +A                        A  KP LRI VLSDG DTKSS        RLQK GI++D++ VG+ E +D+L  L+  TGGY F PK+++EALRL+ELE VL    R P
Sbjct: 1010 SGDTALYDAVEKAADALEAWQSKQDAEA------------------------ANSKPALRIYVLSDGADTKSSTPCWRVAKRLQKAGIVLDAVHVGSCEMDDQLHALAKCTGGYVFRPKSIQEALRLHELEVVLHGPDRAP 1126          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A812XS93_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XS93_SYMPI)

HSP 1 Score: 95.9 bits (237), Expect = 3.490e-20
Identity = 61/141 (43.26%), Postives = 75/141 (53.19%), Query Frame = 1
Query:   13 GDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEE--KPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGTEENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREP 429
            G TRL+DA+QT+   LE W      K R                  E T L  +   P LR+VVLSDG DTKS   A      LQKMG+IVD++ +G E    L  +  ATGGY F P +L++A+RLNELET L S  R P
Sbjct:  713 GSTRLFDAVQTAAEQLEAW------KVR------------------ELTKLGRDGRAPKLRLVVLSDGCDTKSQHSAPKVASSLQKMGVIVDAVMIGNETEPDLHAICKATGGYVFRPASLKDAVRLNELETFLFSLDRPP 829          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A812JDM1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JDM1_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 1.040e-18
Identity = 56/141 (39.72%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   10 AGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGT-EENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREP 429
            +GDT L+DA+  +   LE W           +A + RG +               KP LR+ VLSDG DTKSS        RLQK GI++D++ VG+   +D+L  L+ +TGGY F PK+++EA+RL+ELE VL    R P
Sbjct: 1025 SGDTALYDAVDKAADALEAW-----------QAKQSRGPDA--------------KPALRVYVLSDGSDTKSSLPCWRVARRLQKAGIVLDAVHVGSCGMDDQLHSLAKSTGGYVFQPKSIQEAVRLHELEVVLHGPDRAP 1140          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A7S0AFI0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AFI0_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 4.180e-17
Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   13 GDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGTEENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREP 429
            GDTRL+DAI  +   LE W                R  N      G S         LR++VLSDG DT S  +A     +LQ+  + +D+I +GTE +  L+ ++ ATGGY F P +L +ALRLNELE +LSS  R P
Sbjct:  750 GDTRLYDAIDHAMDELEAW----------------REANKASLQAGVS---------LRMLVLSDGKDTCSGCRAWEVARKLQRESVTLDAIMIGTERDQNLQAIAKATGGYVFQPHSLADALRLNELEVLLSSGERPP 863          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A812TJ48_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TJ48_9DINO)

HSP 1 Score: 81.3 bits (199), Expect = 2.910e-15
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  178 PTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGTEENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHR 423
            P LR+VVLSDG DT S  +A    + LQK G++ D++ +G E N  L  +  A+GGY F P +L++A+RLNELET L S  R
Sbjct:   48 PKLRLVVLSDGCDTSSHKKAPQVAHFLQKKGVLADAVMIGNESNPDLHAICKASGGYVFRPPSLKDAVRLNELETFLFSLER 129          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A178E6T8_9PLEO (Uncharacterized protein n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178E6T8_9PLEO)

HSP 1 Score: 81.3 bits (199), Expect = 4.450e-15
Identity = 50/143 (34.97%), Postives = 72/143 (50.35%), Query Frame = 1
Query:    1 LSHAGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEEKPT--LRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGTEENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHR 423
            L+  GDT LWD I  +   LE +  D+                                PT  LRI+ +SDG DT S+ +A      L + G+++DS ++G E+N+ L+ LS  TGGY FHP++L EA+ + ELE VLS+  R
Sbjct: 1254 LTAQGDTALWDGIALAQDQLEHYARDY--------------------------------PTANLRIICISDGQDTSSTHEAVPVASGLVRRGVLLDSFSLGEEDNEDLQTLSYLTGGYIFHPRSLEEAVAICELEPVLSTSER 1364          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: U1GPS9_ENDPU (Uncharacterized protein n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1GPS9_ENDPU)

HSP 1 Score: 80.9 bits (198), Expect = 6.070e-15
Identity = 50/143 (34.97%), Postives = 70/143 (48.95%), Query Frame = 1
Query:    1 LSHAGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGTEENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREP 429
            L  +GDT LWDA+  +   L  +G  +   ++                              RI+ LSDG DTKS+  A   C RL +  I+VDS ++G E+N  L+ +S  TGGY F P+TL +A+ + ELE VLS   R P
Sbjct: 1274 LKPSGDTSLWDALALAADQLAHFGQKYPGISK------------------------------RIICLSDGVDTKSARTATDVCRRLLRDKIVVDSCSIGVEDNSALRTVSFMTGGYKFVPQTLEQAVAICELEPVLSLHERPP 1386          
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Match: A0A3N4LEJ1_9PEZI (Uncharacterized protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LEJ1_9PEZI)

HSP 1 Score: 80.1 bits (196), Expect = 1.130e-14
Identity = 49/144 (34.03%), Postives = 70/144 (48.61%), Query Frame = 1
Query:    1 LSHAGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHGESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGTEENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREPR 432
            + + GDT +WDA+  +   ++ + A +  +A+K                             RI+ LSDG DT S+ Q    C R Q+  I+VDSI++G E N  L+ LS  T GY F P+ L  A+ + ELETVLS   R  R
Sbjct: 1474 IEYGGDTAMWDALNLASECIQTYSAQFP-EAKK-----------------------------RILCLSDGVDTNSTTQNWLLCKRFQESSIVVDSISIGDENNQNLRALSYGTSGYRFFPQDLESAVAICELETVLSQGERPER 1587          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142361.2931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGP8_ECTSI3.420e-4560.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813ANK4_9DINO1.220e-2041.13Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A1Q9D1U5_SYMMI1.350e-2041.13Putative bifunctional E2/E3 enzyme R795 n=2 Tax=Sy... [more]
A0A812XS93_SYMPI3.490e-2043.26Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A812JDM1_9DINO1.040e-1839.72Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S0AFI0_9DINO4.180e-1739.57Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A812TJ48_9DINO2.910e-1548.78Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A178E6T8_9PLEO4.450e-1534.97Uncharacterized protein n=1 Tax=Pyrenochaeta sp. D... [more]
U1GPS9_ENDPU6.070e-1534.97Uncharacterized protein n=2 Tax=Endocarpon pusillu... [more]
A0A3N4LEJ1_9PEZI1.130e-1434.03Uncharacterized protein n=1 Tax=Terfezia boudieri ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142361contigH-elongata_contig142361:662..1681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.9
Seed ortholog evalue9.1e-40
Seed eggNOG ortholog2880.D7FGP8
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0417@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.3873289-CDS-H-elongata_contig142361:661..8571622929845.3873289-CDS-H-elongata_contig142361:661..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142361 662..857 -
1691679180.9065785-CDS-H-elongata_contig142361:661..8571691679180.9065785-CDS-H-elongata_contig142361:661..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142361 662..857 -
1622929845.4018505-CDS-H-elongata_contig142361:1439..16811622929845.4018505-CDS-H-elongata_contig142361:1439..1681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142361 1440..1681 -
1691679180.9165614-CDS-H-elongata_contig142361:1439..16811691679180.9165614-CDS-H-elongata_contig142361:1439..1681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142361 1440..1681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142361.2931.1prot_H-elongata_contig142361.2931.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142361 662..1681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142361.2931.1

>prot_H-elongata_contig142361.2931.1 ID=prot_H-elongata_contig142361.2931.1|Name=mRNA_H-elongata_contig142361.2931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
LSHAGDTRLWDAIQTSCTLLERWGADWSCKARKRKAAEGRGDNTDKAAHG
ESTTLAEEKPTLRIVVLSDGDDTKSSAQAHSTCYRLQKMGIIVDSITVGT
EENDRLKCLSLATGGYAFHPKTLREALRLNELETVLSSRHREPRKP
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mRNA from alignment at H-elongata_contig142361:662..1681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142361.2931.1 ID=mRNA_H-elongata_contig142361.2931.1|Name=mRNA_H-elongata_contig142361.2931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-elongata_contig142361:662..1681- (Himanthalia elongata Himel1 dioecious)
CTGTCCCATGCGGGAGACACCCGACTATGGGACGCCATCCAAACGTCTTG CACTCTGCTGGAGCGGTGGGGCGCGGATTGGTCTTGCAAGGCTCGGAAGC GAAAGGCGGCCGAGGGCCGCGGCGACAATACGGACAAGGCTGCACACGGG GAGTCCACCACGCTGGCCGAGGAGAAGCCGACGCTGCGCATCGTGGTGCT GAGCGATGGTGACGATACCAAGTCGTCGGCCCAGGCTCACTCGTGAGTTG TTGCTGTAGCTATCGTGGTCGTTATTGTATGTGTGTGTGTGTGTGTGATC AATACAAAAGCAGTATAGATCGGTCGGATATGGTTGGTTACCAATCCTAC TTGTGGCCAGAACTGTGCTTTTATCTCTAAATAAGTACAGAAAAAAAATA TTGTCTAAGCGAGATAATGCTATAAGGCTGCATTCTTGGAGGAGGCATTT TGAAAAAAATAGAGGGAGTTGTACCTAGCACTACCACGTTTAACCTCGTT GGCGAGCAAACCGCTTCCCCGTAGGTGACATGCACAGTGTCCTCTACGGT TTAGTGTTGTCATTTTTATTCTTTTGTCTACAAGAAGTATTCAGCTAAAA TGATCAACGATGCACTAGAATGATGTCTGCGGGTGGACCGCGCTGTCTCT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACTCCCTCCCCCCCCCCCCC ACCCCCCCCCCCCCCCTGCCTCNNNNNNNNNNCCCCCGCTCTCCCCCCCC CCCCCCCCCCATCCGAATCTTGCCTCTCAATTCCCCTTCAATACATCCCG CCTTACGTGTGCATTCTGCAAAAGCACCTGCTACCGCCTTCAGAAGATGG GGATCATCGTGGACAGCATCACCGTCGGGACGGAGGAAAACGACCGTCTC AAGTGCCTGTCGCTGGCCACGGGCGGGTACGCTTTCCACCCGAAGACGCT ACGCGAGGCGCTAAGGCTGAATGAGCTCGAGACGGTGCTGAGCTCGAGGC ACAGGGAGCCGAGGAAACCC
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Coding sequence (CDS) from alignment at H-elongata_contig142361:662..1681-

>mRNA_H-elongata_contig142361.2931.1 ID=mRNA_H-elongata_contig142361.2931.1|Name=mRNA_H-elongata_contig142361.2931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig142361:662..1681- (Himanthalia elongata Himel1 dioecious)
CTGTCCCATGCGGGAGACACCCGACTATGGGACGCCATCCAAACGTCTTG
CACTCTGCTGGAGCGGTGGGGCGCGGATTGGTCTTGCAAGGCTCGGAAGC
GAAAGGCGGCCGAGGGCCGCGGCGACAATACGGACAAGGCTGCACACGGG
GAGTCCACCACGCTGGCCGAGGAGAAGCCGACGCTGCGCATCGTGGTGCT
GAGCGATGGTGACGATACCAAGTCGTCGGCCCAGGCTCACTCCTGTCCCA
TGCGGGAGACACCCGACTATGGGACGCCATCCAAACGTCTTGCACTCTGC
TGGAGCGGTGGGGCGCGGATTGGTCTTGCAAGGCTCGGAAGCGAAAGGCG
GCCGAGGGCCGCGGCGACAATACGGACAAGGCTGCACACGGGGAGTCCAC
CACGCTGGCCGAGGAGAAGCCGACGCTGCGCATCGTGGTGCTGAGCGATG
GTGACGATACCAAGTCGTCGGCCCAGGCTCACTCCACCTGCTACCGCCTT
CAGAAGATGGGGATCATCGTGGACAGCATCACCGTCGGGACGGAGGAAAA
CGACCGTCTCAAGTGCCTGTCGCTGGCCACGGGCGGGTACGCTTTCCACC
CGAAGACGCTACGCGAGGCGCTAAGGCTGAATGAGCTCGAGACGGTGCTG
AGCTCGAGGCACAGGGAGCCGAGGAAACCCCACCTGCTACCGCCTTCAGA
AGATGGGGATCATCGTGGACAGCATCACCGTCGGGACGGAGGAAAACGAC
CGTCTCAAGTGCCTGTCGCTGGCCACGGGCGGGTACGCTTTCCACCCGAA
GACGCTACGCGAGGCGCTAAGGCTGAATGAGCTCGAGACGGTGCTGAGCT
CGAGGCACAGGGAGCCGAGGAAACCC
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