mRNA_H-elongata_contig142308.2929.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142308.2929.1
Unique NamemRNA_H-elongata_contig142308.2929.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: D7G2B3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B3_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 6.990e-15
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:   16 MDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            MDE RALL+QLMGRERD+PVD+R NR R++ DDDICKPYLCG
Sbjct:    1 MDEARALLEQLMGRERDIPVDKRTNRSRKIWDDDICKPYLCG 42
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A835ZA45_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA45_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.780e-12
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   16 MDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            MDETRALLDQLMGRERDVP+D+R NR R  +DDD+CK +L G
Sbjct:    1 MDETRALLDQLMGRERDVPLDKRTNRKRHFTDDDVCKFHLVG 42
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A061R874_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R874_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.510e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 SSWGNMDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            S   NMD TRALLD+LMG+ERDVP+D R N+ RR  D+DICK  LCG
Sbjct:   16 SDLSNMDMTRALLDELMGKERDVPLDVRTNKARRFDDEDICKYDLCG 62
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A061RUV9_9CHLO (Luc7-like protein 3-like (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RUV9_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.700e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 SSWGNMDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            S   NMD TRALLD+LMG+ERDVP+D R N+ RR  D+DICK  LCG
Sbjct:    8 SDLSNMDMTRALLDELMGKERDVPLDVRTNKARRFDDEDICKYDLCG 54
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A4SBD0_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4SBD0_OSTLU)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-9
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   19 DETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            D  RA+LDQLMG ERDVP+DQR  R R  SD D+CK Y+CG
Sbjct:    3 DAMRAMLDQLMGTERDVPLDQRTGRSRHYSDADVCKYYICG 43
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A7S2D4R8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4R8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.660e-9
Identity = 24/45 (53.33%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    7 WGNMDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            W  MDE R LLD+LMG+ER++  ++++NR R  SD D+CK Y+CG
Sbjct:    1 WAKMDEQRRLLDELMGQERNMNEEEKLNRKRHFSDPDVCKYYICG 45
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A6U1IEU4_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A6U1IEU4_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 8.540e-9
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   16 MDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            MD TR LLD+LMG+ERDVP+++R  R RR  D D+CK  LCG
Sbjct:   17 MDMTRQLLDELMGKERDVPLERRTGRARRFDDPDVCKHDLCG 58
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A7S2VXU6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2VXU6_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 1.140e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   22 ETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            E RA+LDQLMG ERDVP++ R  R R  +DD +CK YLCG
Sbjct:    4 EMRAMLDQLMGTERDVPLEHRTGRERTYTDDIVCKYYLCG 43
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A096PAX6_OSTTA (LUC7-related n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PAX6_OSTTA)

HSP 1 Score: 57.4 bits (137), Expect = 2.210e-8
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   19 DETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            D  RA LD+LMG ERDVP+DQR  R R  +D D+CK YLCG
Sbjct:    3 DAARAALDELMGAERDVPLDQRTGRGRHFTDADVCKYYLCG 43
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BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Match: A0A5B8MB89_9CHLO (Luc7-like protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MB89_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 5.460e-8
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   16 MDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG 141
            MDE R LLDQLMG++RD+P+++R  R ++ SD   CK YLCG
Sbjct:    1 MDEQRKLLDQLMGQDRDLPLEERTGRKKKFSDPQFCKYYLCG 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142308.2929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G2B3_ECTSI6.990e-1578.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZA45_9STRA6.780e-1273.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A061R874_9CHLO1.510e-1165.96Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A061RUV9_9CHLO1.700e-1165.96Luc7-like protein 3-like (Fragment) n=1 Tax=Tetras... [more]
A4SBD0_OSTLU2.400e-965.85Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
A0A7S2D4R8_9STRA4.660e-953.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6U1IEU4_9CHLO8.540e-961.90Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7S2VXU6_9CHLO1.140e-862.50Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A096PAX6_OSTTA2.210e-863.41LUC7-related n=1 Tax=Ostreococcus tauri TaxID=7044... [more]
A0A5B8MB89_9CHLO5.460e-857.14Luc7-like protein n=2 Tax=Chloropicon primus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142308contigH-elongata_contig142308:263..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D7G2B3
Preferred nameLUC7L3
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048518,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.mRNA splice site selection
EggNOG OGsCOG5200@1,KOG0796@2759
Ec32 ortholog descriptionLuc7-related
Ec32 orthologEc-16_001790.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.2612188-CDS-H-elongata_contig142308:262..3881622929845.2612188-CDS-H-elongata_contig142308:262..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142308 263..388 -
1691679180.8555436-CDS-H-elongata_contig142308:262..3881691679180.8555436-CDS-H-elongata_contig142308:262..388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142308 263..388 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.278739-UTR-H-elongata_contig142308:388..4031622929845.278739-UTR-H-elongata_contig142308:388..403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142308 389..403 -
1691679180.865035-UTR-H-elongata_contig142308:388..4031691679180.865035-UTR-H-elongata_contig142308:388..403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig142308 389..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142308.2929.1prot_H-elongata_contig142308.2929.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142308 263..388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142308.2929.1

>prot_H-elongata_contig142308.2929.1 ID=prot_H-elongata_contig142308.2929.1|Name=mRNA_H-elongata_contig142308.2929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MDETRALLDQLMGRERDVPVDQRINRVRRVSDDDICKPYLCG
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mRNA from alignment at H-elongata_contig142308:263..403-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142308.2929.1 ID=mRNA_H-elongata_contig142308.2929.1|Name=mRNA_H-elongata_contig142308.2929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig142308:263..403- (Himanthalia elongata Himel1 dioecious)
TCTTCTTGGGGAAATATGGACGAGACCCGGGCGCTACTCGACCAGCTGAT
GGGAAGGGAGAGGGATGTGCCCGTGGACCAGAGGATCAACCGCGTCAGGC
GGGTTTCGGACGACGATATCTGCAAGCCTTACCTTTGCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig142308:263..403-

>mRNA_H-elongata_contig142308.2929.1 ID=mRNA_H-elongata_contig142308.2929.1|Name=mRNA_H-elongata_contig142308.2929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig142308:263..403- (Himanthalia elongata Himel1 dioecious)
ATGGACGAGACCCGGGCGCTACTCGACCAGCTGATGGGAAGGGAGAGGGA
TGTGCCCGTGGACCAGAGGATCAACCGCGTCAGGCGGGTTTCGGACGACG
ATATCTGCAAGCCTTACCTTTGCGGTATGGACGAGACCCGGGCGCTACTC
GACCAGCTGATGGGAAGGGAGAGGGATGTGCCCGTGGACCAGAGGATCAA
CCGCGTCAGGCGGGTTTCGGACGACGATATCTGCAAGCCTTACCTTTGCG
GT
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