mRNA_H-elongata_contig142246.2923.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: D7FZE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE4_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.380e-32 Identity = 84/166 (50.60%), Postives = 92/166 (55.42%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQA------------------SITALPA------FFPFPSAADTAA-------------APASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLLARMD 387
F Q SDVDFLFGLDMLKRHLCVIDLK LGLGSAG VPFLSEKDLP SARETQA S+ P A DT A G ++A + +L MGFSRE+AEGAL+ST GDAEQAAGLLLA+MD
Sbjct: 274 FTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAEDLENKKPAAAESSGSSXSVETAPTGXXXXXXXXXXXAMDTETPATXXXXXXXXXPAXXXXXXAGGAEEAKVTQLTAMGFSREQAEGALSSTGGDAEQAAGLLLAQMD 439
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A6H5L2G1_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G1_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 3.700e-21 Identity = 49/59 (83.05%), Postives = 49/59 (83.05%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQAS 177
F Q SDVDFLFGLDMLKRHLCVIDLK LGLGSAG VPFLSEKDLP SARETQAS
Sbjct: 274 FTILQTSDVDFLFGLDMLKRHLCVIDLKSSMLGLGSAGASVPFLSEKDLPSSARETQAS 332
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: W7T228_9STRA (DNA damage inducible protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T228_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 8.380e-21 Identity = 61/131 (46.56%), Postives = 75/131 (57.25%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFPFPSAADTAAAPASTGGG--GDVDDANIL-RLVGMGFSREEAEGALASTEGDAEQAAGLLLARM 384
F + DVDFLFGLDMLKRH C IDL++ L LGSAG VPFL+EKDLP AR Q A+ G G G+ +A + +L+G+GFSRE+A L TEG+ E+AA LLLA
Sbjct: 306 FTVLENDDVDFLFGLDMLKRHQCCIDLRRNLLVLGSAGKEVPFLAEKDLPARARGHQEE------------GAEKGGEGGREGEGSVGEGREAGLEGQLIGLGFSREQARSGLRRTEGNVEEAAALLLAEF 424
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: C1DZD3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZD3_MICCC) HSP 1 Score: 87.0 bits (214), Expect = 1.560e-17 Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 10 KQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFPFPSAADTAAAPASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
++ D+DFL GLDMLKRH C IDL+K L +GSAG +PFL E DLP AR Q P APA+ GG +DA I +L+ +GF +E+ E AL++ G+ E AA +L
Sbjct: 282 EKEQDMDFLLGLDMLKRHQCCIDLEKNELRVGSAGVSLPFLGEADLPAHARP-QNFEEQPPTXXXXXXXXXXXXAPAAAGG----NDAKIAKLMELGFPKEQCEQALSAAGGNEEHAAAILF 398
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A5D3DHR9_CUCME (DNA damage-inducible protein 1 isoform X2 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DHR9_CUCME) HSP 1 Score: 83.2 bits (204), Expect = 2.090e-17 Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQ-----ASITALP-AFFPFPSAADTAAAPASTGGGGDVD----DANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
F ++DFLFGLDML++H C+IDLK+ L +G VPFL EKD+PPS + + AS + P A P ++ + AA A+ GG +A + +LV +GF RE AL +G+ EQAAG L
Sbjct: 43 FLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSLFDEERLSKEASSSGAPVASSPTENSRNATAARATGNVGGAAQGPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFLF 177
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A1S3BI81_CUCME (DNA damage-inducible protein 1 isoform X1 n=20 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3BI81_CUCME) HSP 1 Score: 83.6 bits (205), Expect = 2.880e-16 Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQ-----ASITALP-AFFPFPSAADTAAAPASTG--GG---GDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
F ++DFLFGLDML++H C+IDLK+ L +G VPFL EKD+PPS + + AS + P A P ++ + AA A+ G GG G +A + +LV +GF RE AL +G+ EQAAG L
Sbjct: 271 FLVLDSPNMDFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPPSLFDEERLSKEASSSGAPVASSPTENSRNATAARATAGNVGGAAQGPEFEAKVAKLVELGFQREAVIQALKLFDGNEEQAAGFLF 406
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A1E1X5B3_9ACAR (Putative dna damage inducible protein n=13 Tax=Ixodidae TaxID=6939 RepID=A0A1E1X5B3_9ACAR) HSP 1 Score: 83.2 bits (204), Expect = 3.850e-16 Identity = 54/136 (39.71%), Postives = 71/136 (52.21%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSAR-----ETQASITALPAFFPFPSAADTAAAPASTGGGGDVDD----ANILRLVGMGFSREEAEGALASTEGDAEQAAGLLLAR 381
F+ + +D L GLDMLKRH C+IDLK+ L +G+ GT PFL E +LP AR +Q+ T P PS A GGG ++ + RL MGF+RE+ AL GDA+QA LLA+
Sbjct: 271 FSVLEEQPMDMLLGLDMLKRHQCLIDLKRNVLVMGTTGTETPFLGEGELPECARLQMLGASQSGSTLGSELSPHPSRA----------GGGAAEEEFPAVAVDRLAAMGFTREQVVSALRQARGDADQALAALLAQ 396
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A329SNU4_9STRA (Uncharacterized protein n=44 Tax=Phytophthora TaxID=4783 RepID=A0A329SNU4_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.100e-15 Identity = 55/139 (39.57%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGL--GSAGTMVPFLSEKDLPPS-----ARETQASITALPAFFPFPSAADTAAA----PASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLLARM 384
F + VDFLFGLDMLKRH C IDL K L L G + V FL E ++P S + + A++ +P P + T+AA PAS G +D + +LVG+GF + A AL + G+ E AAGLL M
Sbjct: 286 FTILDQQGVDFLFGLDMLKRHQCCIDLSKNVLRLHEGDSFHEVSFLPEHEIPSSENRADSAQPPATLGGVPVPASTPGSTPTSAAAVPTPASAAAGSQIDREKVAQLVGLGFPEQRAIQALQTCNGNVEMAAGLLFESM 424
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A6U9QPW5_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9QPW5_9CHLO) HSP 1 Score: 81.3 bits (199), Expect = 1.890e-15 Identity = 55/129 (42.64%), Postives = 71/129 (55.04%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFPFPSAADTAAAPA----STGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
F + D++FLFGLDML+RH C IDLK L G++ VPFLSE LP R+ S P P A A PA +G GG +ANI +L+ +GFSR +A AL + GD ++AA LL
Sbjct: 274 FTILENDDMEFLFGLDMLRRHECSIDLKHNVLRFGTSQIEVPFLSEGQLPEHLRK---SPLGPPPAGPSGEAPKPLAVPAPRMSESGRGGS--EANIEKLIQLGFSRSQATEALQACNGDVDKAASLLF 397
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Match: A0A833Q8W8_9POAL (DNA damage-inducible protein 1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833Q8W8_9POAL) HSP 1 Score: 80.1 bits (196), Expect = 3.500e-15 Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 1 FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPPSARETQASITALPAFFP-----------FPSAADTAAAPASTGGGGDVDDANILRLVGMGFSREEAEGALASTEGDAEQAAGLLL 375
F +++FLFGLDML++H C+IDLK+ L +G VPFL EKD+P ARE + + P PS A T+ AP++ + I RL+ +GF RE + AL +G+ EQAA L
Sbjct: 206 FTVLDADNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVAVPFLQEKDIPTHAREERLANLQAAGSVPESSGARNQTPSLPSPARTSGAPSAAPVVSSDLETKIKRLMELGFDRESVKYALELFKGNEEQAAAFLF 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142246.2923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig142246.2923.1 >prot_H-elongata_contig142246.2923.1 ID=prot_H-elongata_contig142246.2923.1|Name=mRNA_H-elongata_contig142246.2923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp FAPKQRSDVDFLFGLDMLKRHLCVIDLKKGGLGLGSAGTMVPFLSEKDLPback to top mRNA from alignment at H-elongata_contig142246:373..1114+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig142246.2923.1 ID=mRNA_H-elongata_contig142246.2923.1|Name=mRNA_H-elongata_contig142246.2923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at H-elongata_contig142246:373..1114+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig142246:373..1114+ >mRNA_H-elongata_contig142246.2923.1 ID=mRNA_H-elongata_contig142246.2923.1|Name=mRNA_H-elongata_contig142246.2923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig142246:373..1114+ (Himanthalia elongata Himel1 dioecious)back to top |