mRNA_H-elongata_contig142236.2922.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142236.2922.1
Unique NamemRNA_H-elongata_contig142236.2922.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: D7G384_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G384_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 4.360e-38
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    1 CYHSSSPGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQVPER 207
            CYH + PGCK PR FWE NLTIHGLWPDYGDGTYPT C+SE YDHDRVV AIGLD LET+WPNIQVPE 
Sbjct:  102 CYHQNFPGCKKPRSFWEKNLTIHGLWPDYGDGTYPTTCSSEPYDHDRVVNAIGLDVLETMWPNIQVPEE 170          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: A0A835YUF6_9STRA (Ribonuclease T2-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF6_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.750e-29
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 CYHSSSPGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQVPE 204
            CYH+  PGC  PR +W  ++T+HG+WPDYGDGTYPT C+ E +D D++VA IGLDTLE  WPN+Q  E
Sbjct:    8 CYHTDEPGCFKPRPYWRTHMTMHGVWPDYGDGTYPTKCSRERFDEDKLVAVIGLDTLEEFWPNVQKAE 75          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: A0A024GFJ3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.150e-17
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   19 PGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQVPE 204
            PGC  P+ +W+ ++T+HGLWP+Y +G YP +CT+E  D D +  AIG DTL   WP++++ E
Sbjct:   86 PGCHDPQPYWKTHMTLHGLWPEYQNGGYPQFCTTEPLDADLIEKAIGFDTLVKYWPDVKIAE 147          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: F0WIG3_9STRA (Uncharacterized protein AlNc14C110G6363 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIG3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.160e-17
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   19 PGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQVPER 207
            PGC  P+ +W+ ++T+HGLWP+Y +G YP +CTSE  D D +  AIG   L   WP++++ E+
Sbjct:   82 PGCHDPQPYWKTHMTLHGLWPEYQNGGYPQFCTSEPLDADLIEKAIGFQKLVRYWPDVKIAEK 144          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: M4BJ83_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BJ83_HYAAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.200e-16
Identity = 26/70 (37.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 CYHSSS--PGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQVPE 204
            C++  +  PGC+ P+ +W  +LT+HGLWP+      P++C+SEA+D +++ + +G+DTL   WP+++  E
Sbjct:   24 CFNKETQYPGCRAPQRYWRSHLTLHGLWPELSGSAPPSFCSSEAFDAEKIESELGIDTLHEFWPDVKFSE 93          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: A0A482S429_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S429_9ARCH)

HSP 1 Score: 77.4 bits (189), Expect = 2.150e-16
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 CYHSSS-PGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQVPE 204
            CY  ++  GC+TP  +W  + TIHGLWP Y  G YP+ CT+EA++   V   IG  T+ T WPN+QV E
Sbjct:   17 CYGQANYVGCQTPNAYWNKDFTIHGLWPQYSAGGYPSSCTTEAFNAS-VPYDIGWSTMTTYWPNVQVAE 84          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: A0A7S3UUU4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUU4_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 2.120e-15
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    4 YHSSSPGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQVPE 204
            ++S  PGC  P  +WE +LTIHGLWP   DG+YP  C    +D  +++ +IGLD L T+WPN++  +
Sbjct:   70 HYSKYPGCDEPNDYWETHLTIHGLWPQNNDGSYPCSCPGTKFD-PKIMNSIGLDALLTMWPNVKADD 135          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: A0A0A7CMB0_9STRA (Secreted protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CMB0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 4.490e-15
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 CYHSSSPGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQ 195
            C   +  GC+ P  F + NLTIHGLWP+Y DGT+P++C+ E       + AIG DT+ T WP+++
Sbjct:   35 CSTGNYAGCENPTEFMKTNLTIHGLWPNYNDGTFPSFCSDEKLSK-ATIEAIGQDTINTYWPDVK 98          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: A0A0A7CPH9_9STRA (Secreted protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A0A7CPH9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.910e-14
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    1 CYHSSSPGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQ 195
            C   + PGC +P  F + NLTIHGLWP+  DG+YP++C          + A+G+D +   WP+++
Sbjct:   31 CSSGNYPGCDSPTAFMQSNLTIHGLWPENQDGSYPSFCDPNNVLSQDTIDAVGMDAINKYWPDVK 95          
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Match: A0A7S2V600_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V600_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.120e-13
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   19 PGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVAAIGLDTLETVWPNIQ 195
            PGC+ P  FW ++LTIHGLWP Y DG +P+ C++E+   D     +G++ + T WPN++
Sbjct:   86 PGCQDPLPFWRESLTIHGLWPQYEDGGWPSSCSTESLSKDTP-EEVGMELMVTHWPNVK 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142236.2922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G384_ECTSI4.360e-3881.16Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUF6_9STRA6.750e-2960.29Ribonuclease T2-like protein n=1 Tax=Tribonema min... [more]
A0A024GFJ3_9STRA1.150e-1746.77Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WIG3_9STRA8.160e-1744.44Uncharacterized protein AlNc14C110G6363 n=1 Tax=Al... [more]
M4BJ83_HYAAE1.200e-1637.14Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A482S429_9ARCH2.150e-1647.83Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S3UUU4_HETAK2.120e-1544.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0A7CMB0_9STRA4.490e-1544.62Secreted protein n=1 Tax=Thraustotheca clavata Tax... [more]
A0A0A7CPH9_9STRA8.910e-1438.46Secreted protein n=1 Tax=Achlya hypogyna TaxID=120... [more]
A0A7S2V600_9STRA1.120e-1344.07Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142236contigH-elongata_contig142236:119..1097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog2880.D7G384
Preferred nameRNY1
KEGG koko:K01166,ko:K07870,ko:K14430
KEGG TC2.A.47.2
KEGG Pathwayko04137,ko04214,map04137,map04214
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000902,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005775,GO:0005829,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009653,GO:0009987,GO:0012501,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0031974,GO:0032502,GO:0032989,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048856,GO:0048869,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.ribonuclease T2 activity
EggNOG OGsKOG1642@1,KOG1642@2759
EC3.1.27.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03016,ko03029,ko04031
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibonuclease T2-like
Ec32 orthologEc-03_004910.1
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.6650808-CDS-H-elongata_contig142236:118..2301622929844.6650808-CDS-H-elongata_contig142236:118..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142236 119..230 -
1691679180.6156347-CDS-H-elongata_contig142236:118..2301691679180.6156347-CDS-H-elongata_contig142236:118..230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142236 119..230 -
1622929844.6926348-CDS-H-elongata_contig142236:999..10971622929844.6926348-CDS-H-elongata_contig142236:999..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142236 1000..1097 -
1691679180.628878-CDS-H-elongata_contig142236:999..10971691679180.628878-CDS-H-elongata_contig142236:999..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142236 1000..1097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142236.2922.1prot_H-elongata_contig142236.2922.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142236 119..1097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142236.2922.1

>prot_H-elongata_contig142236.2922.1 ID=prot_H-elongata_contig142236.2922.1|Name=mRNA_H-elongata_contig142236.2922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
CYHSSSPGCKTPRLFWEDNLTIHGLWPDYGDGTYPTYCTSEAYDHDRVVA
AIGLDTLETVWPNIQVPER*
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mRNA from alignment at H-elongata_contig142236:119..1097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142236.2922.1 ID=mRNA_H-elongata_contig142236.2922.1|Name=mRNA_H-elongata_contig142236.2922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=979bp|location=Sequence derived from alignment at H-elongata_contig142236:119..1097- (Himanthalia elongata Himel1 dioecious)
TGCTACCACTCGAGCTCCCCCGGCTGCAAGACCCCGAGGCTGTTCTGGGA AGACAACCTGACGATTCACGGACTCTGGCCCGACTACGGAGACGGAACGT GAGCCGGTGACCCTCTGTAATGGTCTCTCTCGTCAGGTGTTAAGCCTCGA TGGTGTTCCTATTGAGGGAGGGGCGAAAGTGGGACGGGACGGGGACGGGG GTACTCGAGTTTTGAACGCCTTAGCTATTAGTATTAGTATTAGTATTACT ACGGCTAGCATTACTATTACTAGTACTAATATTATTATTATTGTTAGTAG TAGTAGTAGTAGTAGTATTACTAGTAGTAATATTAGGCCATTGACCATTG ACCACGCGTCCTTGGGAGGAAGTAAAATTTTCTTGACGCGATTATATCGA TTATAGCGAAGATTCGGACGAGAGCGGTTTCTGCAAGGTGTACAATAGTT ATCATATATATATATAATAGAGAGAGAGGTACGTAGCCGCGGTTGGCCCT CCTCCTCGTTAAGAGAGATTGTCGTGAAGAGGCTCGTTGGCTCTCTTATT ATGGGTGTGCTGTAGCGGCGGCGATGACGGCGACCGGCGATAAAACACGA AACGTTTTACACGTGTTTGCTGCTTCATAGTTGTATTTGTGTGCCTTTGT GAGGTATGAAGGAGCCGCCTACACCTCGCCCCCCCTATCTTCAACGCCTC TTTCTTTCATTCTCTCTCTCTCTCTCTACACATATATATATATCTTATCA AAGCTATCCCACGCACTACACGAGCGAGGCGTCCAACCGCGATAGAGCCC CCCCCCGCCCCCCTTCACCGCCTCTGAATATATATCTCTATATATCTCTA TATTTATGTTATGGCAGGTATCCCACGTACTGCACGAGCGAGGCATACGA CCACGATCGAGTCGTCGCGGCGATCGGACTAGACACCTTGGAGACTGTTT GGCCAAACATACAGGTGCCAGAGAGATAG
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Coding sequence (CDS) from alignment at H-elongata_contig142236:119..1097-

>mRNA_H-elongata_contig142236.2922.1 ID=mRNA_H-elongata_contig142236.2922.1|Name=mRNA_H-elongata_contig142236.2922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig142236:119..1097- (Himanthalia elongata Himel1 dioecious)
TGCTACCACTCGAGCTCCCCCGGCTGCAAGACCCCGAGGCTGTTCTGGGA
AGACAACCTGACGATTCACGGACTCTGGCCCGACTACGGAGACGGAACTG
CTACCACTCGAGCTCCCCCGGCTGCAAGACCCCGAGGCTGTTCTGGGAAG
ACAACCTGACGATTCACGGACTCTGGCCCGACTACGGAGACGGAACGTAT
CCCACGTACTGCACGAGCGAGGCATACGACCACGATCGAGTCGTCGCGGC
GATCGGACTAGACACCTTGGAGACTGTTTGGCCAAACATACAGGTGCCAG
AGAGATAGGTATCCCACGTACTGCACGAGCGAGGCATACGACCACGATCG
AGTCGTCGCGGCGATCGGACTAGACACCTTGGAGACTGTTTGGCCAAACA
TACAGGTGCCAGAGAGATAG
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