mRNA_H-elongata_contig142204.2920.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI00148A67FC (zinc finger BED domain-containing protein 1-like n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A67FC) HSP 1 Score: 72.8 bits (177), Expect = 3.500e-13 Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMKY 228
L WW K++ +P ++ LA+K+LA+ ASS +SERVFS+GG +V+KKR LS V +FL+K+MKY
Sbjct: 601 LEWWKKNSLFFPRISILAKKFLAIPASSVSSERVFSLGGQIVSKKRCRLSHSNVDLFIFLNKNMKY 666
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI001EE6167B (zinc finger BED domain-containing protein 4-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE6167B) HSP 1 Score: 71.6 bits (174), Expect = 5.050e-13 Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
L WW K+A+ +P ++ LARKYLA+ ASS SERVFS+ G LV KKR LS + + +VFL K+M+
Sbjct: 233 LDWWKKNAQYFPRISGLARKYLAIPASSVPSERVFSLAGNLVNKKRARLSPNNIDLLVFLRKNME 297
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A498LK61_LABRO (Zinc finger BED domain-containing 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LK61_LABRO) HSP 1 Score: 68.6 bits (166), Expect = 1.410e-12 Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
L WW + YP+++ LA++YLAVQA+S ASERVFS G +VT +R +LS + V ++FL K+MK
Sbjct: 110 LKWWKDNENQYPNLSKLAKRYLAVQATSVASERVFSTAGDIVTSQRAALSTENVDILIFLKKNMK 174
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A8C2FYL1_CYPCA (BED-type domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FYL1_CYPCA) HSP 1 Score: 70.9 bits (172), Expect = 1.660e-12 Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
L WW + YPH++ LA++YLAVQA+S ASERVFS G +VT +R +LS + V ++FL K+MK
Sbjct: 568 LKWWKDNEHQYPHLSKLAKRYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 632
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A6G0VQN5_APHCR (Zinc finger BED domain-containing protein 1-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VQN5_APHCR) HSP 1 Score: 70.5 bits (171), Expect = 2.260e-12 Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFL 210
L WW+ + YP ++ LA+KYL VQA+S ASERVFS GGL+VT R SL+ D V+++V+L
Sbjct: 525 LKWWSLNCTTYPFLSILAKKYLTVQATSVASERVFSKGGLVVTDHRASLTNDHVSELVYL 584
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A8B8D8W3_CRAVI (zinc finger BED domain-containing protein 1-like n=4 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D8W3_CRAVI) HSP 1 Score: 70.5 bits (171), Expect = 2.270e-12 Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 4 EQLKDSGGSLGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMKY 228
E++ + L WW K++ +P ++ LA+K+LA+ ASS +SE VFS+GG +V+KKR LS + V +FL+K+MKY
Sbjct: 572 EEIDHNLTVLEWWKKNSAFFPRLSVLAKKFLAIPASSVSSEIVFSLGGQIVSKKRCRLSHNNVDLFIFLNKNMKY 646
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI001C59CA0C (zinc finger BED domain-containing protein 4-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C59CA0C) HSP 1 Score: 69.7 bits (169), Expect = 2.890e-12 Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
L WW + YPH++ LA+ YLAVQA+S ASERVFS G +VT +R +LS + V ++FL K+MK
Sbjct: 252 LKWWKDNEHQYPHLSKLAKHYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 316
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI00148A2F2A (zinc finger BED domain-containing protein 4-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A2F2A) HSP 1 Score: 69.7 bits (169), Expect = 3.370e-12 Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMKY 228
L WW K++ +P ++ LA+ +LA+ ASS +SERVFS+GG +++KKR LS V +FL+K+MKY
Sbjct: 282 LEWWKKNSLFFPRISILAKNFLAIPASSVSSERVFSLGGQILSKKRCRLSHSNVDLFIFLNKNMKY 347
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: R7UJ35_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJ35_CAPTE) HSP 1 Score: 64.7 bits (156), Expect = 3.960e-12 Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSM 222
L WWA YP V +AR LAV ASS +ER+FS+GG +VT KR L+ V ++FL K+M
Sbjct: 5 LKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLGGNIVTNKRTKLTSSNVDSLIFLAKNM 68
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: J9KNB2_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KNB2_ACYPI) HSP 1 Score: 69.7 bits (169), Expect = 4.300e-12 Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFL 210
L WW+ + YP ++ +A+KYL +QA+S ASERVFS GGL+VT R SL+ D V+++V+L
Sbjct: 886 LKWWSLNCTTYPFLSVMAKKYLTIQATSVASERVFSKGGLVVTDHRASLTNDHVSELVYL 945 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig142204.2920.1 >prot_H-elongata_contig142204.2920.1 ID=prot_H-elongata_contig142204.2920.1|Name=mRNA_H-elongata_contig142204.2920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp REQLKDSGGSLGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLback to top mRNA from alignment at H-elongata_contig142204:874..1113+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig142204.2920.1 ID=mRNA_H-elongata_contig142204.2920.1|Name=mRNA_H-elongata_contig142204.2920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig142204:874..1113+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig142204:874..1113+ >mRNA_H-elongata_contig142204.2920.1 ID=mRNA_H-elongata_contig142204.2920.1|Name=mRNA_H-elongata_contig142204.2920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig142204:874..1113+ (Himanthalia elongata Himel1 dioecious)back to top |