mRNA_H-elongata_contig142204.2920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142204.2920.1
Unique NamemRNA_H-elongata_contig142204.2920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI00148A67FC (zinc finger BED domain-containing protein 1-like n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A67FC)

HSP 1 Score: 72.8 bits (177), Expect = 3.500e-13
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMKY 228
            L WW K++  +P ++ LA+K+LA+ ASS +SERVFS+GG +V+KKR  LS   V   +FL+K+MKY
Sbjct:  601 LEWWKKNSLFFPRISILAKKFLAIPASSVSSERVFSLGGQIVSKKRCRLSHSNVDLFIFLNKNMKY 666          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI001EE6167B (zinc finger BED domain-containing protein 4-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE6167B)

HSP 1 Score: 71.6 bits (174), Expect = 5.050e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
            L WW K+A+ +P ++ LARKYLA+ ASS  SERVFS+ G LV KKR  LS + +  +VFL K+M+
Sbjct:  233 LDWWKKNAQYFPRISGLARKYLAIPASSVPSERVFSLAGNLVNKKRARLSPNNIDLLVFLRKNME 297          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A498LK61_LABRO (Zinc finger BED domain-containing 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LK61_LABRO)

HSP 1 Score: 68.6 bits (166), Expect = 1.410e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
            L WW  +   YP+++ LA++YLAVQA+S ASERVFS  G +VT +R +LS + V  ++FL K+MK
Sbjct:  110 LKWWKDNENQYPNLSKLAKRYLAVQATSVASERVFSTAGDIVTSQRAALSTENVDILIFLKKNMK 174          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A8C2FYL1_CYPCA (BED-type domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FYL1_CYPCA)

HSP 1 Score: 70.9 bits (172), Expect = 1.660e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
            L WW  +   YPH++ LA++YLAVQA+S ASERVFS  G +VT +R +LS + V  ++FL K+MK
Sbjct:  568 LKWWKDNEHQYPHLSKLAKRYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 632          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A6G0VQN5_APHCR (Zinc finger BED domain-containing protein 1-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VQN5_APHCR)

HSP 1 Score: 70.5 bits (171), Expect = 2.260e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFL 210
            L WW+ +   YP ++ LA+KYL VQA+S ASERVFS GGL+VT  R SL+ D V+++V+L
Sbjct:  525 LKWWSLNCTTYPFLSILAKKYLTVQATSVASERVFSKGGLVVTDHRASLTNDHVSELVYL 584          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: A0A8B8D8W3_CRAVI (zinc finger BED domain-containing protein 1-like n=4 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8D8W3_CRAVI)

HSP 1 Score: 70.5 bits (171), Expect = 2.270e-12
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    4 EQLKDSGGSLGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMKY 228
            E++  +   L WW K++  +P ++ LA+K+LA+ ASS +SE VFS+GG +V+KKR  LS + V   +FL+K+MKY
Sbjct:  572 EEIDHNLTVLEWWKKNSAFFPRLSVLAKKFLAIPASSVSSEIVFSLGGQIVSKKRCRLSHNNVDLFIFLNKNMKY 646          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI001C59CA0C (zinc finger BED domain-containing protein 4-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C59CA0C)

HSP 1 Score: 69.7 bits (169), Expect = 2.890e-12
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMK 225
            L WW  +   YPH++ LA+ YLAVQA+S ASERVFS  G +VT +R +LS + V  ++FL K+MK
Sbjct:  252 LKWWKDNEHQYPHLSKLAKHYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 316          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: UPI00148A2F2A (zinc finger BED domain-containing protein 4-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A2F2A)

HSP 1 Score: 69.7 bits (169), Expect = 3.370e-12
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSMKY 228
            L WW K++  +P ++ LA+ +LA+ ASS +SERVFS+GG +++KKR  LS   V   +FL+K+MKY
Sbjct:  282 LEWWKKNSLFFPRISILAKNFLAIPASSVSSERVFSLGGQILSKKRCRLSHSNVDLFIFLNKNMKY 347          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: R7UJ35_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJ35_CAPTE)

HSP 1 Score: 64.7 bits (156), Expect = 3.960e-12
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFLHKSM 222
            L WWA     YP V  +AR  LAV ASS  +ER+FS+GG +VT KR  L+   V  ++FL K+M
Sbjct:    5 LKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLGGNIVTNKRTKLTSSNVDSLIFLAKNM 68          
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Match: J9KNB2_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KNB2_ACYPI)

HSP 1 Score: 69.7 bits (169), Expect = 4.300e-12
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   31 LGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGLLVTKKRDSLSGDRVADIVFL 210
            L WW+ +   YP ++ +A+KYL +QA+S ASERVFS GGL+VT  R SL+ D V+++V+L
Sbjct:  886 LKWWSLNCTTYPFLSVMAKKYLTIQATSVASERVFSKGGLVVTDHRASLTNDHVSELVYL 945          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142204.2920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00148A67FC3.500e-1351.52zinc finger BED domain-containing protein 1-like n... [more]
UPI001EE6167B5.050e-1353.85zinc finger BED domain-containing protein 4-like n... [more]
A0A498LK61_LABRO1.410e-1250.77Zinc finger BED domain-containing 1-like protein n... [more]
A0A8C2FYL1_CYPCA1.660e-1252.31BED-type domain-containing protein n=1 Tax=Cyprinu... [more]
A0A6G0VQN5_APHCR2.260e-1255.00Zinc finger BED domain-containing protein 1-like (... [more]
A0A8B8D8W3_CRAVI2.270e-1245.33zinc finger BED domain-containing protein 1-like n... [more]
UPI001C59CA0C2.890e-1252.31zinc finger BED domain-containing protein 4-like n... [more]
UPI00148A2F2A3.370e-1248.48zinc finger BED domain-containing protein 4-like n... [more]
R7UJ35_CAPTE3.960e-1248.44Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
J9KNB2_ACYPI4.300e-1251.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142204contigH-elongata_contig142204:874..1113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score69.7
Seed ortholog evalue7e-10
Seed eggNOG ortholog7029.ACYPI26298-PA
Preferred nameZBED1
EggNOG free text desc.Zinc finger, BED-type containing 1
EggNOG OGs39X45@33154,3BJIV@33208,3E423@33213,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.5559614-CDS-H-elongata_contig142204:873..11131622929844.5559614-CDS-H-elongata_contig142204:873..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142204 874..1113 +
1691679180.578406-CDS-H-elongata_contig142204:873..11131691679180.578406-CDS-H-elongata_contig142204:873..1113Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142204 874..1113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142204.2920.1prot_H-elongata_contig142204.2920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142204 874..1113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142204.2920.1

>prot_H-elongata_contig142204.2920.1 ID=prot_H-elongata_contig142204.2920.1|Name=mRNA_H-elongata_contig142204.2920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
REQLKDSGGSLGWWAKSARVYPHVTTLARKYLAVQASSAASERVFSVGGL
LVTKKRDSLSGDRVADIVFLHKSMKYDLW*
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mRNA from alignment at H-elongata_contig142204:874..1113+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142204.2920.1 ID=mRNA_H-elongata_contig142204.2920.1|Name=mRNA_H-elongata_contig142204.2920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig142204:874..1113+ (Himanthalia elongata Himel1 dioecious)
AGAGAGCAACTCAAAGACTCAGGGGGCTCTCTAGGGTGGTGGGCAAAGTC TGCCCGAGTATATCCCCATGTGACCACACTAGCTCGAAAGTATCTTGCAG TTCAAGCTTCATCTGCTGCGTCGGAACGAGTTTTCTCTGTAGGCGGACTC CTAGTCACAAAGAAGCGAGACAGTCTGTCCGGAGATCGAGTAGCAGACAT TGTTTTCCTCCACAAAAGCATGAAATACGACCTCTGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig142204:874..1113+

>mRNA_H-elongata_contig142204.2920.1 ID=mRNA_H-elongata_contig142204.2920.1|Name=mRNA_H-elongata_contig142204.2920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig142204:874..1113+ (Himanthalia elongata Himel1 dioecious)
AGAGAGCAACTCAAAGACTCAGGGGGCTCTCTAGGGTGGTGGGCAAAGTC
TGCCCGAGTATATCCCCATGTGACCACACTAGCTCGAAAGTATCTTGCAG
TTCAAGCTTCATCTGCTGCGTCGGAACGAGTTTTCTCTGTAGGCGGACTC
CTAGTCACAAAGAAGCGAGACAGTCTGTCCGGAGATCGAGTAGCAGACAT
TGTTTTCCTCCACAAAAGCATGAAATACGACCTCTGGTAGAGAGAGCAAC
TCAAAGACTCAGGGGGCTCTCTAGGGTGGTGGGCAAAGTCTGCCCGAGTA
TATCCCCATGTGACCACACTAGCTCGAAAGTATCTTGCAGTTCAAGCTTC
ATCTGCTGCGTCGGAACGAGTTTTCTCTGTAGGCGGACTCCTAGTCACAA
AGAAGCGAGACAGTCTGTCCGGAGATCGAGTAGCAGACATTGTTTTCCTC
CACAAAAGCATGAAATACGACCTCTGGTAG
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