mRNA_H-elongata_contig142060.2909.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: D7FVC8_ECTSI (DNA replication licensing factor MCM3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVC8_ECTSI) HSP 1 Score: 343 bits (880), Expect = 6.670e-111 Identity = 167/182 (91.76%), Postives = 176/182 (96.70%), Query Frame = 1
Query: 1 RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
RDRINALKG H RL+VDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAF KTLKDR+I IGFEGSFGHQH+SPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQ+FT+REYRDSTA+ELGLD+GGR NLPTTTLYPTKDA+G+PLETEYGLCRFKDHQTVTIQ
Sbjct: 41 RDRINALKGAKHLRLVVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFIKTLKDRDILIGFEGSFGHQHVSPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQSFTSREYRDSTAVELGLDAGGRENLPTTTLYPTKDAEGHPLETEYGLCRFKDHQTVTIQ 222
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A835Z466_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z466_9STRA) HSP 1 Score: 202 bits (513), Expect = 2.200e-57 Identity = 101/177 (57.06%), Postives = 130/177 (73.45%), Query Frame = 1
Query: 4 DRINALKGK-SHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQ 531
DRI L RL++ LNHLR + D+A R+MRRP PYM+A REAA+++AL DP+F K L+DR I GFEG+FGHQH+SPR L++ +L+ LVCVEGIVTKC++VRPKL+KSVH+ P+ T REYRD T++ELGL+ GG + T PTKD + N LE EYGLC++KDHQ
Sbjct: 50 DRIGKLMATPKKLRLLISLNHLRKNQSLDVA-RLMRRPLPYMWAFREAAKEIALREDPSFAKVLRDREI--GFEGAFGHQHVSPRSLISHFLKMLVCVEGIVTKCSNVRPKLMKSVHYCPATGEHTQREYRDGTSLELGLEIGGTMQMVTQGGQPTKDPENNTLEVEYGLCQYKDHQ 223
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: K8Z007_NANGC (Dna replication licensing factor mcm3 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z007_NANGC) HSP 1 Score: 184 bits (467), Expect = 1.520e-55 Identity = 91/183 (49.73%), Postives = 126/183 (68.85%), Query Frame = 1
Query: 1 RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRN-IHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
+D I K R++V+LN LR +LA R++ P Y+ AL A ++VA +DP+F K L + + +GF+G+FG H+SPRGL + L LVCVEGIVTKC+ VRPK+V+SVH+ P+ Q R+YRD+T++ +GL++GGR LPT YP KD DG+PLETE+GL +KDHQ+VTIQ
Sbjct: 45 KDSIAHTLSKKGRRVVVNLNDLREFD-VELARRVITSPLEYLLALETAVKEVAQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRRLAQLVCVEGIVTKCSLVRPKVVRSVHYCPAKQEHLVRDYRDATSISIGLEAGGRPMLPTNNTYPNKDKDGHPLETEFGLSTYKDHQSVTIQ 226
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A7S1XKS1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKS1_9STRA) HSP 1 Score: 181 bits (459), Expect = 1.770e-55 Identity = 83/142 (58.45%), Postives = 109/142 (76.76%), Query Frame = 1
Query: 121 YMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
Y+Y L A D A +DPA+ KT D+ + +GFEGSFG H+SPRGLL+ ++ +LVCV+GIVTKC VRPK+V+SVH+ P+ + TTR+YRD+TA++LGL+ GR LPT +YPT+D +GN LETE+GLC FKDHQ VTIQ
Sbjct: 1 YIYPLMRAITDNAKDLDPAYGKTQGDKLVQVGFEGSFGEHHVSPRGLLSRFICSLVCVDGIVTKCGVVRPKVVRSVHYCPATKEHTTRDYRDATAVDLGLEVNGRPLLPTPVVYPTRDPEGNLLETEFGLCDFKDHQVVTIQ 142
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A4D9D854_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D854_9STRA) HSP 1 Score: 183 bits (464), Expect = 2.800e-50 Identity = 90/183 (49.18%), Postives = 126/183 (68.85%), Query Frame = 1
Query: 1 RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRN-IHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
+D I K R++V+LN LR +LA R++ P Y+ AL A ++V +DP+F K L + + +GF+G+FG H+SPRGL + L LVCVEGIVTKC+ VRPK+V+SVH+ P+ Q R+YRD+T++ +GL++GGR LPT YP+KD DG+PLETE+GL +KDHQ+VTIQ
Sbjct: 45 KDSIAHTLSKKGRRVVVNLNDLREFD-VELARRVITSPLEYLLALETAVKEVTQRLDPSFGKLLSQHDQLKVGFDGAFGRNHVSPRGLTSRRLAQLVCVEGIVTKCSLVRPKVVRSVHYCPAKQEHLVRDYRDATSISIGLEAGGRPMLPTNNTYPSKDKDGHPLETEFGLSTYKDHQSVTIQ 226
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A7S3M7F8_9STRA (DNA replication licensing factor MCM3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7F8_9STRA) HSP 1 Score: 181 bits (460), Expect = 6.800e-50 Identity = 89/171 (52.05%), Postives = 130/171 (76.02%), Query Frame = 1
Query: 40 RLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLD-SGGRGN-LPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
R IVD+N LRS G+LA +I+RRP Y+ AL+EA + + +DP+F K LK ++ +GFEGSFG +SPRGL +S L +LV VEGI+TKC+SVRPKL++SV + P+ + ++ R+YRD+T++++G++ +GG G LPT++ PT DADGNPLE E+GLC +KD+QT+ +Q
Sbjct: 42 RFIVDINELRSF-EGELANKIIRRPREYIVALQEAGVERSKKIDPSFEKVLKSADLQVGFEGSFGPNAVSPRGLNSSMLNSLVQVEGIITKCSSVRPKLMRSVQYCPATKLWSIRDYRDATSIDIGIEVTGGSGERLPTSSALPTSDADGNPLEIEHGLCMYKDYQTLVLQ 211
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A314YEX0_PRUYE (DNA replication licensing factor MCM3 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YEX0_PRUYE) HSP 1 Score: 167 bits (424), Expect = 1.990e-48 Identity = 85/181 (46.96%), Postives = 124/181 (68.51%), Query Frame = 1
Query: 4 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
D I A+ + RLIVD++HL S G D+ RI+R P+ Y+ + +AA ++A +DP + K + + +GF+G F + ++PR LL+ Y+ ++VCV GIVTKC+ VRPK+VKSVHF P+ FTTREYRD T+ +GL PT ++YPT+D +GN L TEYGLC++KDHQT+++Q
Sbjct: 26 DEIRAIINHNRRRLIVDISHLHSYG-DDIGARILRNPSDYLQSFNDAATEIANRIDPRYLK--QGEQLLVGFQGPFVSRRVTPRDLLSEYIGSMVCVHGIVTKCSLVRPKVVKSVHFCPTTGNFTTREYRDITS-NMGL--------PTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQ 194
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A482RYX9_9ARCH (Minichromosome maintenance protein MCM n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYX9_9ARCH) HSP 1 Score: 169 bits (428), Expect = 5.330e-48 Identity = 85/183 (46.45%), Postives = 124/183 (67.76%), Query Frame = 1
Query: 4 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLD--SGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
D+I + R ++++N LRS +LA RI+R+P YM AL+EAA + A ++DPA+ K L +++ +GFEGSFG ISPRGL + L TLV VEGI+ KC+SVRPKL++SV + P+ ++ REYRD+TA+++G+ PT+++ PTKD +GN LE E GLC +KD+Q V +Q
Sbjct: 30 DKIKESINEKKYRFVLNINELRSR-ETELASRILRQPREYMIALQEAASETARSLDPAYEKLLNTKDLQVGFEGSFGANSISPRGLNSRLLNTLVEVEGIIVKCSSVRPKLMRSVQYCPTTNQYSLREYRDATALDVGIKVRDDAPEKFPTSSIMPTKDVNGNVLELEPGLCSYKDYQVVVLQ 211
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: A0A251PHA3_PRUPE (DNA replication licensing factor MCM3 n=8 Tax=Prunus TaxID=3754 RepID=A0A251PHA3_PRUPE) HSP 1 Score: 167 bits (424), Expect = 6.170e-45 Identity = 85/181 (46.96%), Postives = 124/181 (68.51%), Query Frame = 1
Query: 4 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
D I A+ + RLIVD++HL S G D+ RI+R P+ Y+ + +AA ++A +DP + K + + +GF+G F + ++PR LL+ Y+ ++VCV GIVTKC+ VRPK+VKSVHF P+ FTTREYRD T+ +GL PT ++YPT+D +GN L TEYGLC++KDHQT+++Q
Sbjct: 26 DEIRAIINHNRRRLIVDISHLHSYG-DDIGARILRNPSDYLQSFNDAATEIANRIDPRYLK--QGEQLLVGFQGPFVSRRVTPRDLLSEYIGSMVCVHGIVTKCSLVRPKVVKSVHFCPTTGNFTTREYRDITS-NMGL--------PTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQ 194
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Match: D7TK30_VITVI (DNA replication licensing factor MCM3 n=4 Tax=Vitis TaxID=3603 RepID=D7TK30_VITVI) HSP 1 Score: 166 bits (421), Expect = 1.490e-44 Identity = 89/181 (49.17%), Postives = 124/181 (68.51%), Query Frame = 1
Query: 4 DRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARDVALAMDPAFNKTLKDRNIHIGFEGSFGHQHISPRGLLASYLRTLVCVEGIVTKCTSVRPKLVKSVHFNPSNQTFTTREYRDSTAMELGLDSGGRGNLPTTTLYPTKDADGNPLETEYGLCRFKDHQTVTIQ 546
D I A+ RLI++++ L D R DLA RI++ P YM +AA DV+ +DP + K + I +GFEG F + ++PR LL+S++ ++VCVEGIVTKC+ VRPK+VKSVHF PS+ FTTREYRD T+ +GL PT ++YPT+D +GN L TEYGLC++KDHQT+++Q
Sbjct: 30 DEIKAMINHKRHRLILNISDLH-DYRTDLAHRILKNPGEYMQPFSDAATDVSRNLDPKYLK--EGEQILVGFEGPFVSRRVTPRDLLSSFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPSSGNFTTREYRDITS-NMGL--------PTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQ 198 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142060.2909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig142060.2909.1 >prot_H-elongata_contig142060.2909.1 ID=prot_H-elongata_contig142060.2909.1|Name=mRNA_H-elongata_contig142060.2909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp RDRINALKGKSHARLIVDLNHLRSDGRGDLAGRIMRRPAPYMYALREAARback to top mRNA from alignment at H-elongata_contig142060:647..1658+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig142060.2909.1 ID=mRNA_H-elongata_contig142060.2909.1|Name=mRNA_H-elongata_contig142060.2909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1012bp|location=Sequence derived from alignment at H-elongata_contig142060:647..1658+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig142060:647..1658+ >mRNA_H-elongata_contig142060.2909.1 ID=mRNA_H-elongata_contig142060.2909.1|Name=mRNA_H-elongata_contig142060.2909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig142060:647..1658+ (Himanthalia elongata Himel1 dioecious)back to top |