mRNA_H-elongata_contig142056.2908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142056.2908.1
Unique NamemRNA_H-elongata_contig142056.2908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142056.2908.1 vs. uniprot
Match: A0A6H5L3Q6_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 8.440e-13
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:   16 SAPGDKENMPKG---NSHGTRVCEAPSSSLSVLQMRRFLRAIGQSTVGLKPALTARLDTAIASGAVKSFVESSKGR 234
            +AP DKEN          G+R  + P + +SVLQ+RRFLR IGQ T GLKP L+ARL+ A+ASGAVK+FV++++ +
Sbjct:   82 AAPVDKENASAAAVAKPAGSRASKVPPTGMSVLQLRRFLRVIGQPTSGLKPVLSARLEKAVASGAVKTFVDTARAQ 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142056.2908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L3Q6_9PHAE8.440e-1351.32SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142056contigH-elongata_contig142056:41..706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.8009288-CDS-H-elongata_contig142056:40..1181622929843.8009288-CDS-H-elongata_contig142056:40..118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142056 41..118 +
1691679180.2731297-CDS-H-elongata_contig142056:40..1181691679180.2731297-CDS-H-elongata_contig142056:40..118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142056 41..118 +
1622929843.8100991-CDS-H-elongata_contig142056:525..7051622929843.8100991-CDS-H-elongata_contig142056:525..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142056 526..705 +
1691679180.2832623-CDS-H-elongata_contig142056:525..7051691679180.2832623-CDS-H-elongata_contig142056:525..705Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142056 526..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142056.2908.1prot_H-elongata_contig142056.2908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142056 41..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142056.2908.1

>prot_H-elongata_contig142056.2908.1 ID=prot_H-elongata_contig142056.2908.1|Name=mRNA_H-elongata_contig142056.2908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
VGGGLSAPGDKENMPKGNSHGTRVCEAPSSSLSVLQMRRFLRAIGQSTVG
LKPALTARLDTAIASGAVKSFVESSKGRKADESVVC
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mRNA from alignment at H-elongata_contig142056:41..706+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142056.2908.1 ID=mRNA_H-elongata_contig142056.2908.1|Name=mRNA_H-elongata_contig142056.2908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=666bp|location=Sequence derived from alignment at H-elongata_contig142056:41..706+ (Himanthalia elongata Himel1 dioecious)
GTAGGAGGTGGATTGAGCGCGCCTGGAGACAAGGAGAATATGCCAAAAGG
CAACTCTCATGGGACCCGCGTGTGCGAGGTATGTTTTCCCCCGTCTATGC
TCTGATCTCCAGAGTTTGCGGTGTTGTATCTTGCGAGAGGAATAAGCTCC
CGCCGAAATTACTCTAATGAACCGTTTTTTCGTTTTTCCTACTGTGAACA
CAACTTTATCTCTCAAAATTACCGTTTGCAACCCGTTGGCTTCAGTGAGG
CATATCCAACCGAAGGAAAGGCCAGGAGCTCGAATAGAGACATGGCTAGA
TATAAGCACCCAACGAGGTGGTTATTAATGGTCACAATCACTTATGCGAT
GTTGCAATCTATCTGGATGATGCGGTAGCGAGCAGGAAACTCACTAGTGC
ATGGCGGGGGGAACTGAAAAAGCTCCCGTTGACCGTTAACAAAAACATGC
CACAATCTTTCCCCTAAACGTCTCACATATCACAGGCACCCTCCTCGAGT
CTGAGCGTGCTACAGATGCGTCGATTCCTGAGGGCCATCGGACAGTCCAC
CGTGGGCCTCAAGCCTGCCCTGACTGCCCGCCTCGACACAGCCATCGCTT
CGGGTGCTGTCAAATCTTTTGTGGAGTCCTCGAAAGGACGGAAGGCCGAC
GAATCTGTCGTTTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig142056:41..706+

>mRNA_H-elongata_contig142056.2908.1 ID=mRNA_H-elongata_contig142056.2908.1|Name=mRNA_H-elongata_contig142056.2908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig142056:41..706+ (Himanthalia elongata Himel1 dioecious)
GTAGGAGGTGGATTGAGCGCGCCTGGAGACAAGGAGAATATGCCAAAAGG
CAACTCTCATGGGACCCGCGTGTGCGAGGTAGGAGGTGGATTGAGCGCGC
CTGGAGACAAGGAGAATATGCCAAAAGGCAACTCTCATGGGACCCGCGTG
TGCGAGGCACCCTCCTCGAGTCTGAGCGTGCTACAGATGCGTCGATTCCT
GAGGGCCATCGGACAGTCCACCGTGGGCCTCAAGCCTGCCCTGACTGCCC
GCCTCGACACAGCCATCGCTTCGGGTGCTGTCAAATCTTTTGTGGAGTCC
TCGAAAGGACGGAAGGCCGACGAATCTGTCGTTTGTGCACCCTCCTCGAG
TCTGAGCGTGCTACAGATGCGTCGATTCCTGAGGGCCATCGGACAGTCCA
CCGTGGGCCTCAAGCCTGCCCTGACTGCCCGCCTCGACACAGCCATCGCT
TCGGGTGCTGTCAAATCTTTTGTGGAGTCCTCGAAAGGACGGAAGGCCGA
CGAATCTGTCGTTTGT
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