mRNA_H-elongata_contig142000.2907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142000.2907.1
Unique NamemRNA_H-elongata_contig142000.2907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: D8LGB6_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB6_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 7.160e-31
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 MLAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVLGI 183
            MLAE+CVPVATHRHGCCV+QRA+DAATVEQSRLLVSQV  HALQLMQ PYGNYVVQYVLGI
Sbjct:    1 MLAEACVPVATHRHGCCVIQRAIDAATVEQSRLLVSQVSKHALQLMQDPYGNYVVQYVLGI 61
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: F0WL38_9STRA (Uncharacterized protein AlNc14C140G7225 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WL38_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.530e-17
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 177
            ++  C  V THRHGCCVLQR LDAA V Q + L++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  684 VSRECTTVGTHRHGCCVLQRCLDAANVTQKKELIAQVEYHAMKLMQDPYGNYVVQYVL 741
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A1V9YPP5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPP5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.530e-17
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 177
            +A  C  V THRHGCCVLQR +DAA   Q R ++SQV  HA++LMQ PYGNYVVQYVL
Sbjct:  405 VATDCTVVGTHRHGCCVLQRCVDAANEAQKRAVISQVELHAMKLMQDPYGNYVVQYVL 462
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A024GRC2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRC2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.230e-16
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 177
            ++  C  V THRHGCCVLQR LDAA   Q + L++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  697 VSRECTTVGTHRHGCCVLQRCLDAANTLQKKELIAQVENHAMKLMQDPYGNYVVQYVL 754
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A8K1FE37_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE37_PYTOL)

HSP 1 Score: 77.8 bits (190), Expect = 1.620e-16
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 177
            + + C  V THRHGCCVLQR LDAA   Q R +++QV   A++LMQ PYGNYVVQYVL
Sbjct:   81 VCKECTTVGTHRHGCCVLQRCLDAANDTQKREVITQVEKQAMKLMQDPYGNYVVQYVL 138
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: C6HGH6_AJECH (RNA-binding protein n=2 Tax=Histoplasma TaxID=5036 RepID=C6HGH6_AJECH)

HSP 1 Score: 79.3 bits (194), Expect = 7.970e-16
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVLGI 183
            + ESCVPV THRHGCCVLQR +D A+ +Q   L+ Q+  +A  L+Q P+GNYVVQY+L +
Sbjct:  560 VGESCVPVGTHRHGCCVLQRCIDHASGDQRARLIEQITNNAFTLVQDPFGNYVVQYILDL 619
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A3R7AAA0_9STRA (PUM-HD domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AAA0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 8.780e-16
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 177
            ++  C  V THRHGCCVLQR +DAA   Q R +++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  187 VSAECTVVGTHRHGCCVLQRCVDAANPAQRREVIAQVEKHAMKLMQDPYGNYVVQYVL 244
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A6G0WN87_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN87_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.080e-15
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 177
            +   C  V THRHGCCVLQR +DAA   Q + +++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  457 VCAECTVVGTHRHGCCVLQRCVDAANASQKKEVIAQVEKHAMKLMQDPYGNYVVQYVL 514
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: A0A485KML4_9STRA (Aste57867_9189 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KML4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.090e-15
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVL 177
            +   C  V THRHGCCVLQR +DAA V Q   +++QV  HA++LMQ PYGNYVVQYVL
Sbjct:  489 VCAECTVVGTHRHGCCVLQRCVDAANVVQKAEVIAQVEAHAMKLMQDPYGNYVVQYVL 546
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BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Match: I4Y6W8_WALMC (ARM repeat-containing protein (Fragment) n=3 Tax=Wallemia mellicola TaxID=1708541 RepID=I4Y6W8_WALMC)

HSP 1 Score: 78.6 bits (192), Expect = 1.480e-15
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    4 LAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPYGNYVVQYVLGI 183
            +A +C+ VATHRHGCCVLQR +D A+ +Q   LV+++  HAL L+Q P+GNYVVQYVL +
Sbjct:  338 VASNCIEVATHRHGCCVLQRCIDHASDQQRIQLVTEITYHALTLIQDPFGNYVVQYVLDL 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142000.2907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGB6_ECTSI7.160e-3190.16PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
F0WL38_9STRA3.530e-1765.52Uncharacterized protein AlNc14C140G7225 n=1 Tax=Al... [more]
A0A1V9YPP5_9STRA6.530e-1765.52Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024GRC2_9STRA1.230e-1663.79Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8K1FE37_PYTOL1.620e-1662.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
C6HGH6_AJECH7.970e-1656.67RNA-binding protein n=2 Tax=Histoplasma TaxID=5036... [more]
A0A3R7AAA0_9STRA8.780e-1662.07PUM-HD domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6G0WN87_9STRA1.080e-1560.34Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KML4_9STRA1.090e-1562.07Aste57867_9189 protein n=1 Tax=Aphanomyces stellat... [more]
I4Y6W8_WALMC1.480e-1558.33ARM repeat-containing protein (Fragment) n=3 Tax=W... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142000contigH-elongata_contig142000:665..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue1.9e-23
Seed eggNOG ortholog2880.D8LGB6
EggNOG free text desc.regulation of translation
EggNOG OGsCOG5099@1,KOG2049@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.7555768-CDS-H-elongata_contig142000:664..7061622929843.7555768-CDS-H-elongata_contig142000:664..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142000 665..706 -
1691679180.247633-CDS-H-elongata_contig142000:664..7061691679180.247633-CDS-H-elongata_contig142000:664..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142000 665..706 -
1622929843.7685676-CDS-H-elongata_contig142000:1200..13411622929843.7685676-CDS-H-elongata_contig142000:1200..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142000 1201..1341 -
1691679180.2609713-CDS-H-elongata_contig142000:1200..13411691679180.2609713-CDS-H-elongata_contig142000:1200..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142000 1201..1341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142000.2907.1prot_H-elongata_contig142000.2907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142000 665..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142000.2907.1

>prot_H-elongata_contig142000.2907.1 ID=prot_H-elongata_contig142000.2907.1|Name=mRNA_H-elongata_contig142000.2907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLAESCVPVATHRHGCCVLQRALDAATVEQSRLLVSQVCTHALQLMQGPY
GNYVVQYVLGI
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mRNA from alignment at H-elongata_contig142000:665..1341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142000.2907.1 ID=mRNA_H-elongata_contig142000.2907.1|Name=mRNA_H-elongata_contig142000.2907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=677bp|location=Sequence derived from alignment at H-elongata_contig142000:665..1341- (Himanthalia elongata Himel1 dioecious)
ATGCTGGCCGAGTCTTGTGTCCCTGTGGCCACCCACCGTCACGGCTGCTG
CGTGCTGCAGAGGGCGCTAGACGCCGCCACAGTAGAACAGTCCAGGCTTC
TGGTGTCTCAAGTCTGCACGCACGCCCTACAGCTCATGCAGGTGCATACG
TTTTGGAACACCACGTGTCTATTGGCTCTTTCGTACGCCGTTATCCGTTG
GTGAAAAACGCCATTATTTCCTTCCTTTCAGAGCTCTGTCCTCGTCCTCA
GGAAGATGCGTGATCGATGATCTCACAGCGAAGGCATGCCAACAATACAG
TAGGTTTACCCTCGTTGACATATCGCCCTTCCAGAAGCTTTTCATATGGG
TGGTAAGGGGTGTTTTTGAGAGCGCCCTGTGTAGTCTGTACTGACGAGAA
CAACTTCTTTTTGGGGTTTTGGAAAATAACAAAGGCATACATTGGTCAAA
TATTTCCATGCCACGATCACCCCTTTCCCCGTCAGCCAAACCCCTCCTCG
TCAGCATTTCCACAATGCCGATTTTTGGGTACTAAACTCAAGCTTCTTTC
GTGTGTCGACATGCTACGGCCGTGCGGTCGGTGGATGTTTTTGTGTTTTT
GTGTTGGATCCGGGGGGGGGGGGGGGGGGCCCCAGGGTCCCTACGGGAAC
TACGTGGTGCAGTACGTGCTGGGCATT
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Coding sequence (CDS) from alignment at H-elongata_contig142000:665..1341-

>mRNA_H-elongata_contig142000.2907.1 ID=mRNA_H-elongata_contig142000.2907.1|Name=mRNA_H-elongata_contig142000.2907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig142000:665..1341- (Himanthalia elongata Himel1 dioecious)
ATGCTGGCCGAGTCTTGTGTCCCTGTGGCCACCCACCGTCACGGCTGCTG
CGTGCTGCAGAGGGCGCTAGACGCCGCCACAGTAGAACAGTCCAGGCTTC
TGGTGTCTCAAGTCTGCACGCACGCCCTACAGCTCATGCAGATGCTGGCC
GAGTCTTGTGTCCCTGTGGCCACCCACCGTCACGGCTGCTGCGTGCTGCA
GAGGGCGCTAGACGCCGCCACAGTAGAACAGTCCAGGCTTCTGGTGTCTC
AAGTCTGCACGCACGCCCTACAGCTCATGCAGGGTCCCTACGGGAACTAC
GTGGTGCAGTACGTGCTGGGCATTGGTCCCTACGGGAACTACGTGGTGCA
GTACGTGCTGGGCATT
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