mRNA_H-elongata_contig1420.2906.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 153 bits (387), Expect = 1.340e-36 Identity = 87/241 (36.10%), Postives = 129/241 (53.53%), Query Frame = 1
Query: 25 GVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRIL--HGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERFGVTKTSTI 741
GV++ V RP ++G++ VFK K G++EKYK RLVAQGF QV+GI Y E+ +P SIR++L + A W+ Q+DV A+L ++EEEIY+++P ++ S L+KA+YGL A W K E + GF QAD CVF + + H ++ + SDL S F + DLGE + L +TR R T++ Q QYI+ + ER G+ + +
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAVYVDDNMVLSDSLDLVTKTK---SDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILERHGMAECKPV 1262
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A328KP65_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KP65_9BACI) HSP 1 Score: 141 bits (356), Expect = 3.800e-36 Identity = 72/197 (36.55%), Postives = 117/197 (59.39%), Query Frame = 3
Query: 780 CPQTDSEFEEMRQIPYREIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTDWRAAQKALQYLS------------------AWIDADYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSKSEYVALAEMVNELRQVKEFMTP---PNDVAIKIHEDNEGAIKMAKNRFGSRRMRHVDIKHHIVRDAVDGG 1307
C + + ++M+ PYRE+VGAL W AT TRPDIS A L +F DNPG W +A++ L+YL A+ D+D+ D+RRS S +MM+G I+W S +QK+ A +S+++EY+AL+E + E+ +++ +T +A ++ EDN+G I ++KNR +R +H+D++ H RD ++ G
Sbjct: 1 CATSAEQMQDMQGTPYRELVGALNWIATCTRPDISHAVSSLCRFLDNPGQQHWTSAKRVLKYLKGSSNCGLFFQAKQPPHLIAFSDSDWAGDKDSRRSTSGYTLMMSGSTIAWRSALQKIGACSSTEAEYIALSETMREVIWIRQMLTELGFSQKLATRVFEDNQGCIAISKNRRTDKRTKHIDLRFHFCRDQIEQG 197
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: UPI001EAF45B3 (secreted RxLR effector protein 161-like n=2 Tax=Osmia bicornis bicornis TaxID=1437191 RepID=UPI001EAF45B3) HSP 1 Score: 140 bits (354), Expect = 5.280e-36 Identity = 78/198 (39.39%), Postives = 114/198 (57.58%), Query Frame = 3
Query: 780 CPQTDSEFEEMRQIPYREIVGALMWAATMTRPDISFAAHQLGKFNDNPGPTDWRAAQKALQYLS-----------------AWIDADYGTCPDTRRSVSEGAVMMAGGAISWFSRVQKVTAAASSKSEYVALAEMVNELRQVKEFMTPPNDVAIKIHE-----DNEGAIKMAKNRFGSRRMRHVDIKHHIVRDAVDGG 1307
CP T+ E + M Q+PYR ++G+LM+ AT TRPDI+ A L +FNDNPG W+AA++ L+Y+ + DAD+G D RRS + + GGAISW SR QK A +S+++EY+AL+E E + F+T +V K+ DN+ A MAKN R +H+DI++H VR++V+ G
Sbjct: 2 CPTTEEERDRMNQVPYRSLIGSLMYLATSTRPDIAHAVSALSQFNDNPGEEHWKAAKRVLRYIKRTEKMEIVFTKTENELIGFSDADWGASIDDRRSYTGYVFRLFGGAISWSSRKQKTVAMSSAEAEYMALSEAAKESIYQRRFLT---EVVGKLKTTLILCDNQSAGLMAKNPVYHERTKHIDIRYHFVRESVERG 196
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A6A3JRZ2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JRZ2_9STRA) HSP 1 Score: 143 bits (360), Expect = 2.230e-35 Identity = 85/241 (35.27%), Postives = 124/241 (51.45%), Query Frame = 1
Query: 1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVF-RRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERFG 720
E+ G W +V R +G R VF +K D++GR+ +YK RLVA+GF+Q GI + E+ SP SIR+VL++ AA ++ QLD D A+L +++++ +Y+E+P +R L KA+YGL A W K F GF AD CV+ +R +G + T D + L + F +K+LG A + LG I AGTLK Q +YI V +RFG
Sbjct: 16 ELLSHERNGTWTLVPRGTANRTIGCRWVFAKKRDQYGRVVRYKARLVAKGFKQKYGIDFFETYSPVANMNSIRVVLSVCAAYEYRMEQLDADTAFLNSELKDRVYMEVPFGIENARDYQYQLNKAIYGLKQAASAWNKTIHRVFLGNGFKSCGADQCVYVKRSKNGFIYVCLYVDDMIIAAK--TSEDIREVKDALKNAFKMKELGPAKFILGMEIDHDMTAGTLKIKQTRYIDDVVKRFG 254
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM) HSP 1 Score: 149 bits (376), Expect = 3.550e-35 Identity = 80/239 (33.47%), Postives = 121/239 (50.63%), Query Frame = 1
Query: 25 GVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERFGVTKTSTI 741
G W++ E ++G+R VF +K D+HG++ +YK RLVAQGF Q+ G+ Y ++ SP ++R + + A W+ Q+D+ AYL ++EEEI++E PE + + + L+ +YGL AG +W K + GF + ADPCV+ G + R + VS L F +KDLGE LG I R R T+ Q YI + ERF +K + I
Sbjct: 885 GTWELDEPDEERKLVGSRWVFAKKYDEHGKVNQYKARLVAQGFSQIPGVDYTDNYSPVVRLDAVRACIALSAIKDWEMRQIDIKGAYLNGELEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCVYYNNQDGKITILTVWVDDIILCGDSESRIDT-TVSALKKIFEVKDLGEPKLLLGIQIIRNRKLKTITISQRNYINTILERFNYSKINPI 1122
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY) HSP 1 Score: 148 bits (374), Expect = 6.170e-35 Identity = 87/241 (36.10%), Postives = 128/241 (53.11%), Query Frame = 1
Query: 1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
EM+ + GVW +VE PNG +G + VFK K D G IE+YK RLVA+GF Q +GI Y E+ SP + S+R++L ++A + Q+DV A+L D+EEE+Y++ PE + S + + L+K++YGL A W F + GF + D C+++++ G+ + K + L F +KD+GEASY +G I R R G L Q YI V ERF
Sbjct: 708 EMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERF 947
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY) HSP 1 Score: 146 bits (369), Expect = 1.220e-34 Identity = 86/241 (35.68%), Postives = 127/241 (52.70%), Query Frame = 1
Query: 1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
E D GVW++V+R G V+G + +FKRK D G++EK+K RLVA+G+ Q G+ +EE+ SP SIR +L+++A ++ Q+DV A+L D+EE++Y+E PE + ++ + L K++YGL A W F GF + ++PCV+ R +H VV +E L F +KDLGEASY LG I R R L Q YI + E+F
Sbjct: 353 EFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVILTLYVDDILLAGNDVDMLDE-VKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 592
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A438G5R6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G5R6_VITVI) HSP 1 Score: 140 bits (352), Expect = 1.620e-34 Identity = 85/241 (35.27%), Postives = 123/241 (51.04%), Query Frame = 1
Query: 1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
EM VW +VE PNG +G + VFK K D G IE+YK RLVA+GF Q +GI Y E+ SP + S+R++L ++A + Q+DV A+L ++EEE+Y++ PE + S + + L+K++YGL A W F + F + D C++ ++ G+ V K + L F +KD+GEASY +G I R R G L Q YI V ERF
Sbjct: 4 EMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPISKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFSFVENVMDQCIYLKV-SGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERF 243
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A6A3H7M5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3H7M5_9STRA) HSP 1 Score: 139 bits (349), Expect = 1.700e-34 Identity = 83/239 (34.73%), Postives = 122/239 (51.05%), Query Frame = 1
Query: 1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGLLRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
E+ G W ++ R G +G R VF +K ++HGR+ +YK RLVA+GF+Q G+ + E+ S SIR+VL+++ A + QLD D A+L +D++E++++E+P + L KA+YGL A W + F GF AD CV+ + GT V T+ E V+ L S F +K+LGE + LG I R AGTL Q +YI V RF
Sbjct: 16 ELKAHADNGSWTLIRRAAGVRPIGCRWVFAKKRNEHGRVVRYKARLVAKGFKQKFGVDFFETYSHVANMNSIRVVLSVVVAEAYVTEQLDTDTAFLNSDLKEQVFMEVPYGITNAENMMCKLDKAIYGLKQAASAWHQTIHAVFMKIGFCSCGADQCVYVKGAKGTYVYVCLYVDDMIIAAKTTEEINEVKVA-LKSAFKMKELGETKFILGMEIDHDRMAGTLMIKQTRYIDDVTNRF 253
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Match: A0A2N9I256_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I256_FAGSY) HSP 1 Score: 146 bits (369), Expect = 2.570e-34 Identity = 86/241 (35.68%), Postives = 127/241 (52.70%), Query Frame = 1
Query: 1 EMDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLTMIAALGWKAPQLDVDMAYLEADVEEEIYVELPEAYRESRKQDGL--LRKAMYGLVHAGLLW*K*FGIEFEAKGF*ISQADPCVFRRILHGTVVXXXXXXXXXXXXXXXTKRDEEQAVSDLCSCFPIKDLGEASYYLGCHITRGRNAGTLKFDQHQYIQPVAERF 717
E D GVW++V+R G V+G + +FKRK D G++EK+K RLVA+G+ Q G+ +EE+ SP SIR +L+++A ++ Q+DV A+L D+EE++Y+E PE + ++ + L K++YGL A W F GF + ++PCV+ R +H VV +E L F +KDLGEASY LG I R R L Q YI + E+F
Sbjct: 529 EFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVILTLYVDDILLAGNDVDMLDE-VKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 768 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1420.2906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1420.2906.1 >prot_H-elongata_contig1420.2906.1 ID=prot_H-elongata_contig1420.2906.1|Name=mRNA_H-elongata_contig1420.2906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MDGQTARGVWQVVERPNGETVLGTRVVFKRKIDKHGRIEKYKCRLVAQGFback to top mRNA from alignment at H-elongata_contig1420:463..1956- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1420.2906.1 ID=mRNA_H-elongata_contig1420.2906.1|Name=mRNA_H-elongata_contig1420.2906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1494bp|location=Sequence derived from alignment at H-elongata_contig1420:463..1956- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1420:463..1956- >mRNA_H-elongata_contig1420.2906.1 ID=mRNA_H-elongata_contig1420.2906.1|Name=mRNA_H-elongata_contig1420.2906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig1420:463..1956- (Himanthalia elongata Himel1 dioecious)back to top |