mRNA_H-elongata_contig142.2905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142.2905.1
Unique NamemRNA_H-elongata_contig142.2905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig142.2905.1 vs. uniprot
Match: D8LGG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.540e-35
Identity = 86/174 (49.43%), Postives = 113/174 (64.94%), Query Frame = 1 
Query:  130 MARLEADIELEQIRSEENNNTVHTRSQMRTATRGWLAGVVXXXXXXXXXXXXXXXXXXFMLVPPFVLAGVVGGLIYAQIGDKIRSRRRETVGLD-EHSLVVG-GNSGNKEEFLRQLQGRSVPAATCPNLNAD-SCSPTDSFSRRVVEAAVQALVRSTLDAAASVAMSALGLGEG 642
            M R++A+IELEQ++ EE+ + +  R+Q+RT T GWL GV+   XXXXXXX        FM+V PFV  GV+GGL+Y+Q+ DKIRS  R  + ++ EH    G   S +K+EFLRQLQGRS P+AT  ++  D S  P+ SF RRV   A   LVRS LD  A+ A + LGLG G
Sbjct:    1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRGRSRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAACAMLGLGRG 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142.2905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGG6_ECTSI1.540e-3549.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142contigH-elongata_contig142:7189..12557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003970.1
Exons6
Model size642
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142.2905.1prot_H-elongata_contig142.2905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142 7189..12557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.5211382-CDS-H-elongata_contig142:7188..72691622929843.5211382-CDS-H-elongata_contig142:7188..7269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 7189..7269 +
1691679180.1474695-CDS-H-elongata_contig142:7188..72691691679180.1474695-CDS-H-elongata_contig142:7188..7269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 7189..7269 +
1622929843.5341995-CDS-H-elongata_contig142:8245..83081622929843.5341995-CDS-H-elongata_contig142:8245..8308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 8246..8308 +
1691679180.157287-CDS-H-elongata_contig142:8245..83081691679180.157287-CDS-H-elongata_contig142:8245..8308Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 8246..8308 +
1622929843.5454755-CDS-H-elongata_contig142:11139..113071622929843.5454755-CDS-H-elongata_contig142:11139..11307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 11140..11307 +
1691679180.168933-CDS-H-elongata_contig142:11139..113071691679180.168933-CDS-H-elongata_contig142:11139..11307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 11140..11307 +
1622929843.573983-CDS-H-elongata_contig142:11591..117021622929843.573983-CDS-H-elongata_contig142:11591..11702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 11592..11702 +
1691679180.1783462-CDS-H-elongata_contig142:11591..117021691679180.1783462-CDS-H-elongata_contig142:11591..11702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 11592..11702 +
1622929843.5964277-CDS-H-elongata_contig142:11914..120331622929843.5964277-CDS-H-elongata_contig142:11914..12033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 11915..12033 +
1691679180.185916-CDS-H-elongata_contig142:11914..120331691679180.185916-CDS-H-elongata_contig142:11914..12033Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 11915..12033 +
1622929843.6146493-CDS-H-elongata_contig142:12457..125571622929843.6146493-CDS-H-elongata_contig142:12457..12557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 12458..12557 +
1691679180.193378-CDS-H-elongata_contig142:12457..125571691679180.193378-CDS-H-elongata_contig142:12457..12557Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142 12458..12557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142.2905.1

>prot_H-elongata_contig142.2905.1 ID=prot_H-elongata_contig142.2905.1|Name=mRNA_H-elongata_contig142.2905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
MYSTLEEEELTAQRDAAISLFKGLQEKIREQADSYEVRTEAAEMARLEAD
IELEQIRSEENNNTVHTRSQMRTATRGWLAGVVLGWSAAFVLGCSFSPVL
GFMLVPPFVLAGVVGGLIYAQIGDKIRSRRRETVGLDEHSLVVGGNSGNK
EEFLRQLQGRSVPAATCPNLNADSCSPTDSFSRRVVEAAVQALVRSTLDA
AASVAMSALGLGEG
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mRNA from alignment at H-elongata_contig142:7189..12557+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142.2905.1 ID=mRNA_H-elongata_contig142.2905.1|Name=mRNA_H-elongata_contig142.2905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5369bp|location=Sequence derived from alignment at H-elongata_contig142:7189..12557+ (Himanthalia elongata Himel1 dioecious)
ATGTACTCCACTCTCGAAGAGGAGGAGCTCACCGCCCAGCGTGATGCAGC
GATTTCTCTGTTCAAAGGTTTACAAGAGAAGGTGATGTGGAGCCAGCTTC
GGCTCGAAGAGAGTCTGTTTTAAATACGGCTTTCCGATCGCTGTCCTCAT
CCCACTGATCTACATTATTTTTTATCACAATTTTCAACCTATAGGCTCTA
CAACATCCTAGGTTACCAATCCCATCGGGCCTAAGTAATCAACCAAACTG
TCCCCTCGCTTACGCACACGAATTTCTAGCGCGAGGCAAGTTCGGTACCC
CTACACACCTTCTCAACCAGTAATGGGTTGGATTTTGAACCAGCAATAGT
TGAATTTTGCATACGTCCTCACATTTTTCTTCAAAAACCCCATGAACTCA
TTCCAGCCCTCCTAACACCCACGCCTTCTTAGCACCGTGAGAGGTGCAGT
CCAGGGGACCAACTATCATCAGGTTCGAATTTGTACATTACTACATTTTG
AGCACATTTTCCGTTACAGAAGCACGACAACAAAATAACATTCTTGACAA
GATCTGAACTCGACTTACTTTCCTAATACCAAGTACTTCGTATGATGGGC
TACATGGTTATCTCTGCGTAGAACAATGGAGGAGTGCTCGGGCGACGAGT
CTACAGAGCTTTTTAACACAGCAGAGTCACTTCATATTTATACTATGTAG
GCGTGTACGGAGTGTGATAAGGTTTGCTTAACAACCGGCAGCCTTCTTGT
TGACGTCCGAACATTCTTCCAGTCTTGCCGAGGGCGAGCTTGAATTGCGC
ATTGATGTTCTACTCTCGGGCGGCGCCCTTCTTCTATGTTACTACACTAC
TGAACACTAAACATGCCTCCTTATGTGCGTCGGACGAGCCCGCGATTGGG
TGCTCCCCGCCACAGTTGCAGTTTTTAAAGCTACGAACTAATACTATATT
CCACGTACAGCTGTAGGAGTGCGACTCGCGTCTTGGCTCTTACCTTGGAA
GTCTCTTGGCCGATGTTGTGTGCCCACCCATGCGATGAATGCGTCAATGA
TGGCCAGATTCGAGAACAAGCCGACTCGTACGAGGTTCGGACCGAGGCGG
CGGAGATGGCACGATTAGAGGTGAAATGTGAAACGGACGCTGTGAGGCGA
TCATTGTATTTGTGTGCTGTATTCGCTAAATGCTTTCGTTTCGCGTGTAT
GTCGTCGCCTTATGACTTGCTAATTCCCAATGTTGCCCATCTCCTGCCTG
TATGGTCCAAGAGGATACCCGTCACTCGCCGGTTCATGCCTACCGTGCTT
TTGTTTTGATCGCGCGGTGAAATTTCCGCACTCCTGCTACACCTCATCGA
CCAAGATGCTTGAGCGCTTGCTTGGACAGTCTTACCGAAGTTCCACCTGT
TCACCGCTGATAGTAGCAACATCATACTTGCATGTCCCAAGTTGATCAGA
GTCTTGCTATGTATAGAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATATATATATATATATATATATGTAGCCTTTAGTATGGATCAAC
CGGGTATAGCTGCCAATCCTGTCCCCGTTCGGGCCTGATAATTTGGTCTC
GCGAGACGGGTTCGGCCGTCCCGTCCCGCGTCAGCCCGCCCATTCTCCCC
AACCCAGAGTTGAACCTGGTCCGTACTCGCGGGATCCTCTCGACTGTAAC
CTACCGGTACACGAAATTCGACATACTATATACAATATACTATATACAGT
ATACTATTCACGGTCGACGAGGGAAAGGGACGGCCGAATCCTTCTTGCGA
TAAAAAATTAAGGCAACCACCGCAGAAGGAAGGTGGAGAAATCCTGTGCG
ACTCTACCCTACCCTACCCCGGCGGGTGCGTCCACAAGTCTGACGTCCAT
AATAAATGGGGGATGACAACACACACAAGACACATATTTTTTCTTGTTGA
GTGTCACACACCTTGTTTACGTGTTTGTGTGCGTTGTCATTACTTATAGC
AGTACAGTATATAGCCTTTAGTATGGATCAACTGGATAAGGTTGCCAATC
CTGCTTGTGGTCAGCTGAACAGGGAAAATGAGTATTATATTTTCCCTGTC
TCCGTTCGGGCCTGAGAATATTTTGTCTCGCGAGACGGTTCGCTCGTCCC
GTCCCGCTTCAGCCGGCTTGAACCTGGTCCGTACTCCCGCGATCCTCTCG
AGTGTAACCTACCGATATTACTTGATATTTGTATTTTGCCGAATATGGTC
TCTTCATAATACTGTCTCTTCATAATACTGCAAAAAACATCACACCAGAC
AGCAGTCTATGGACTAAAATAGCAGCACTTTAGACAGTAGATACTGTACA
GCAGATAATAGTATATAATCATATTTCTTACCGAAGGGGATCTTCGTGGC
GTGGGTAGAATTTTTAGCGGTTCCCGTGTGGTTAGACCTGGCGACGGATT
TTGTTGCGATTTGGGATAAATCCCTAGTCTTGCTATAGTAGCTTGATGAC
GTCACCAATATTCGATCTGTTAACCGTCGTACCTTTTCGAGGCCACGAAC
CGTTAGCCGTTAAGCCCAATACAAGCGTGCTCGTGCTGGTTTGCTCGCCA
TAGTTAGTTAGCCACGAGTGGCGCGAACCTATCCTCCGGGCAGGTTTTTC
GCTTGCCGATGTCATGTTGCCTTTTTCTGGCGTTTCGTTTTTTTCCTCTT
CTTTGTCTTGTTTTCCTTTTTGTTCGTTGCTAGTGGGTATCGTATGGTAG
TTAGTATAGTAGTTAGTATGGTCGGGTCCCAATCGGTTAATGGGAAGAGC
ACATACTGTACACATTTTAAAGTATCATGCACCATTACCGTTTTTTACTC
CCGGATTGTATTATGTAAATTTCAACCATTGTTTGGCTATTATAGGTGGT
ACGTCCATGAGTTGTGCATCGCGATACTTGTAAAATAAATAAAAAACAGG
CGTGCACCAGGGAGAGATGGCTAGATTGACCCTTTAACCCTTTAAGTCCC
CAGGCAGGAGGCGGTCGGTGAGCAGCGTTGCGTTCGGTGGGATTGGTAAC
CTGGCACATTGAACGGCCCAATCGGCAGCAAGCGACATCAACAAAACAAG
CAAACTGTCCCATACCATCACCACAGCCCGTGCTGCGGGTTTAGTGTGGA
AACACGGCGCTCTCTCACGATCACGATGCTCTTTCCTCCCGTATGGTGAT
GCAGGTCCTTCTCTGTCGACGCATAATATGTCTGGCCTAGCGAGCACTTG
TGATATTACTAGGATATTGTGTTTAAAAAAAAGAAGGATATTTGGGGGTT
TGTTGACTCCGTGTTAACACCGCGCTTGCTCCTCGAGAAACAGAACATGG
GGCCAACCAGTGCGAAAGTTGAAGGGTAGCGCTTTCTCCTTGTCCTCGAA
CGTTTGGGTTTGCTCCCTAAGAGTCAGCTTTCTTTCATCTTTCTTTTATC
CCCTCAGAAGTATCCCCCCAAAAGGGGAAAAAAGCCAGCTTAACAGCCTT
AACCAAGGGCGCTCCACCAGGCCGTGAAAGCAAAAGTTCAACCACATACA
CTGACTTTTGATCAATTTGCATTCAGACCACGCACATCGGGGACACGTAA
GGGGGCGCCGCTCCGGTTTGAAAATAACCCACCCTCCTCTGGCGACTTAT
CCTGGAAGAAATTGGCTTACGGTACAGCGATCCTATTCGCGTCCCCCTTT
CACATTAAAAACATACCAGATATCTACGTGTTTTATCGATTTGCGCAAAA
GGCAGATATCGAGCTGGAGCAAATACGATCAGAGGAGAATAATAACACCG
TGCATACGAGGAGCCAAATGCGCACGGCGACCCGGGGATGGCTGGCCGGA
GTTGTGCTGGGGTGGTCGGCCGCCTTCGTTCTTGGTTGTTCCTTCTCTCC
GGTGCTCGGTTTCATGCTAGTGAGTTTCTCTCTTTTCTTTTCTTTTCTCC
TCCTCCGCCTCTCAGACTGCGCATTACAATCAACGCTTCTTAAGATTCGC
TGGGAGTTCACACGGATAGTGGCTTTTGCGTATGGGTGTATCAGGCGGCG
CCGGGTCGACAACGAACGATCTGGCATCCAGTTCATCCTCAAAGTTGTCC
GGGATCAATATTCGTGTTCGAGCAACAAGTCCTTCCCCTCCCCTTCCTTA
CGCCTATCCCTAACCCCCCTCCCGCGCTATCGTGCCTGCGTGGTGTTCGC
CAGGTGCCCCCTTTTGTGCTGGCAGGTGTCGTGGGAGGTTTGATCTACGC
TCAAATTGGAGACAAGATTCGTTCCCGGCGACGTGAAACGGTGGGACTGG
ATGAACATTCTCTAGTTGCAACGTCATATGTGTATGTGTGTAACGGCTCT
TCTTGTTTTGGTTGATTAGTTCCTCGTACGTTTTTTCCACATGATGTGAG
TTATATTGTACTAACTTCGGCCGTGGCATGTCAAACGTGATCCGACACCG
GCATTTTCCCAACGTCCGCGTTGATCGTTCCCCCCTCTCCTTCGTCGGCC
TCATTCCGGCGCACGTGGGAACGCAGGTGGTCGGAGGGAACTCGGGAAAC
AAGGAAGAATTCCTGAGACAGCTCCAGGGGCGATCCGTTCCAGCGGCCAC
GTGTCCGAACTTGAACGCCGACAGCTGCTCGCCGACCGACTCTTTGTAAG
TGTTCAAGGAGAGGAAAGGGTAATACTGATTTCCTCTTTGCCCCTGTGGA
TCTTGCAGAGGTTGTGAAGATCCTCCCCTTTCTCGATGATTGGTATTATA
GGTATTCGAAGTTACTCCCCTTTATGGTACCGTATAGTAGATTATATAGG
AAGTGACTTGAAGGCCTTGGCTCCGTCGGTCCCTTCGTGTCTTATTTACC
AGTAGTGCGAGAGAGAAAATAGCGAAATAATCGTTCATGTGTTATCTCTG
CGCAAGATTTTACTCGGGAAGCTCGTTGTAATCCGGAGCCATAATCACAT
CGTTCGGCTGGCGAAATTATCTCCCCCTAATCTATAGCCCTTTTAACCCC
GCCGACTCGCGCGTACCCCGTACCCCGTCGCATCCCTCGCCCTCTTGTCC
GGCTTTGGCCCGGCGATAGCTCCCGAAGAGTAGTCGAGGCGGCGGTGCAA
GCGCTCGTGAGGTCCACCCTGGACGCGGCAGCATCGGTGGCAATGTCCGC
GCTGGGTCTGGGAGAAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig142:7189..12557+

>mRNA_H-elongata_contig142.2905.1 ID=mRNA_H-elongata_contig142.2905.1|Name=mRNA_H-elongata_contig142.2905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig142:7189..12557+ (Himanthalia elongata Himel1 dioecious)
ATGTACTCCACTCTCGAAGAGGAGGAGCTCACCGCCCAGCGTGATGCAGC
GATTTCTCTGTTCAAAGGTTTACAAGAGAAGATGTACTCCACTCTCGAAG
AGGAGGAGCTCACCGCCCAGCGTGATGCAGCGATTTCTCTGTTCAAAGGT
TTACAAGAGAAGATTCGAGAACAAGCCGACTCGTACGAGGTTCGGACCGA
GGCGGCGGAGATGGCACGATTAGAGATTCGAGAACAAGCCGACTCGTACG
AGGTTCGGACCGAGGCGGCGGAGATGGCACGATTAGAGGCAGATATCGAG
CTGGAGCAAATACGATCAGAGGAGAATAATAACACCGTGCATACGAGGAG
CCAAATGCGCACGGCGACCCGGGGATGGCTGGCCGGAGTTGTGCTGGGGT
GGTCGGCCGCCTTCGTTCTTGGTTGTTCCTTCTCTCCGGTGCTCGGTTTC
ATGCTAGCAGATATCGAGCTGGAGCAAATACGATCAGAGGAGAATAATAA
CACCGTGCATACGAGGAGCCAAATGCGCACGGCGACCCGGGGATGGCTGG
CCGGAGTTGTGCTGGGGTGGTCGGCCGCCTTCGTTCTTGGTTGTTCCTTC
TCTCCGGTGCTCGGTTTCATGCTAGTGCCCCCTTTTGTGCTGGCAGGTGT
CGTGGGAGGTTTGATCTACGCTCAAATTGGAGACAAGATTCGTTCCCGGC
GACGTGAAACGGTGGGACTGGATGAACATTCTCTAGTGCCCCCTTTTGTG
CTGGCAGGTGTCGTGGGAGGTTTGATCTACGCTCAAATTGGAGACAAGAT
TCGTTCCCGGCGACGTGAAACGGTGGGACTGGATGAACATTCTCTAGTGG
TCGGAGGGAACTCGGGAAACAAGGAAGAATTCCTGAGACAGCTCCAGGGG
CGATCCGTTCCAGCGGCCACGTGTCCGAACTTGAACGCCGACAGCTGCTC
GCCGACCGACTCTTTGTGGTCGGAGGGAACTCGGGAAACAAGGAAGAATT
CCTGAGACAGCTCCAGGGGCGATCCGTTCCAGCGGCCACGTGTCCGAACT
TGAACGCCGACAGCTGCTCGCCGACCGACTCTTTCTCCCGAAGAGTAGTC
GAGGCGGCGGTGCAAGCGCTCGTGAGGTCCACCCTGGACGCGGCAGCATC
GGTGGCAATGTCCGCGCTGGGTCTGGGAGAAGGCCTCCCGAAGAGTAGTC
GAGGCGGCGGTGCAAGCGCTCGTGAGGTCCACCCTGGACGCGGCAGCATC
GGTGGCAATGTCCGCGCTGGGTCTGGGAGAAGGC
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