mRNA_H-elongata_contig141978.2901.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141978.2901.1
Unique NamemRNA_H-elongata_contig141978.2901.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141978.2901.1 vs. uniprot
Match: D8LMI5_ECTSI (S4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMI5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.850e-17
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 KVNGEPCGPVPLLVAFHKPKGVITTLSDEWSREDLSHVLPKSLLRK 138
            +VNGE  GPVPLLVAFHKPKGVITTLSD+W REDLS VLPKSLL K
Sbjct:  183 EVNGEVHGPVPLLVAFHKPKGVITTLSDDWDREDLSDVLPKSLLLK 228
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BLAST of mRNA_H-elongata_contig141978.2901.1 vs. uniprot
Match: A0A835YWQ3_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWQ3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.810e-8
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 KVNGEPCGPVPLLVAFHKPKGVITTLSDEWSREDLSHVLPKSLLRK 138
            +V+G+    +PLL+AFHKPKG+++TLSD+W R  L  VLP + L++
Sbjct:   33 RVDGDVLEALPLLIAFHKPKGIVSTLSDDWDRTHLKDVLPATYLQR 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141978.2901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMI5_ECTSI6.850e-1784.78S4 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A835YWQ3_9STRA1.810e-850.00Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141978contigH-elongata_contig141978:397..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D8LMI5
EggNOG free text desc.enzyme-directed rRNA pseudouridine synthesis
EggNOG OGs2QT4T@2759,COG1187@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPseudouridine synthase, RsuA/RluB/C/D/E/F
Ec32 orthologEc-05_002890.1
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929843.2608287-CDS-H-elongata_contig141978:396..5371622929843.2608287-CDS-H-elongata_contig141978:396..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141978 397..537 +
1691679179.9934528-CDS-H-elongata_contig141978:396..5371691679179.9934528-CDS-H-elongata_contig141978:396..537Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141978 397..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141978.2901.1prot_H-elongata_contig141978.2901.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141978 397..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141978.2901.1

>prot_H-elongata_contig141978.2901.1 ID=prot_H-elongata_contig141978.2901.1|Name=mRNA_H-elongata_contig141978.2901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
KVNGEPCGPVPLLVAFHKPKGVITTLSDEWSREDLSHVLPKSLLRK*
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mRNA from alignment at H-elongata_contig141978:397..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141978.2901.1 ID=mRNA_H-elongata_contig141978.2901.1|Name=mRNA_H-elongata_contig141978.2901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig141978:397..537+ (Himanthalia elongata Himel1 dioecious)
AAGGTGAACGGGGAGCCCTGCGGGCCCGTTCCGCTGCTCGTGGCGTTCCA
CAAGCCGAAAGGCGTTATCACAACCTTGAGCGACGAGTGGAGCCGGGAGG
ATCTGTCTCACGTGCTGCCCAAGTCTTTGCTGCGGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig141978:397..537+

>mRNA_H-elongata_contig141978.2901.1 ID=mRNA_H-elongata_contig141978.2901.1|Name=mRNA_H-elongata_contig141978.2901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig141978:397..537+ (Himanthalia elongata Himel1 dioecious)
AAGGTGAACGGGGAGCCCTGCGGGCCCGTTCCGCTGCTCGTGGCGTTCCA
CAAGCCGAAAGGCGTTATCACAACCTTGAGCGACGAGTGGAGCCGGGAGG
ATCTGTCTCACGTGCTGCCCAAGTCTTTGCTGCGGAAGTGAAAGGTGAAC
GGGGAGCCCTGCGGGCCCGTTCCGCTGCTCGTGGCGTTCCACAAGCCGAA
AGGCGTTATCACAACCTTGAGCGACGAGTGGAGCCGGGAGGATCTGTCTC
ACGTGCTGCCCAAGTCTTTGCTGCGGAAGTGA
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