mRNA_H-elongata_contig141874.2898.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: D7FRC0_ECTSI (Radical S-adenosyl methionine domain-containing protein 1, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC0_ECTSI) HSP 1 Score: 246 bits (627), Expect = 3.960e-74 Identity = 147/323 (45.51%), Postives = 186/323 (57.59%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNH-----------AGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVET----------------------DNALNTGG---------------LGEIDRSTDGAG--------------QVGSRGCRRRR---LRLSDPEGFLFSNSVISSVFCKLD 774
VEA T FG+W++PG+ PLP +ETCADMYR AS + + ++ISNYARPGF+S+HNRAYWENVPFLAFGNGAAS+VDG RFSRPRGL +YGQWV EL GW+ AT A+ AG +++ SREA +R DAL +D+MLGFRLKEGLDL + +KYG A ++VEEG+T+G+R+GWV+RD D+ + GG +G+ R++ G G +V S G R LRLSDP+GFLFSNSVISSVFC+LD
Sbjct: 272 VEAGTPFGRWFSPGEAPLPEDETCADMYRTASGVLGQAGYDHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGYRFSRPRGLPEYGQWVGELEEEGWDKATGAPRRAACEEVLPGGGGMGDGAGAEESRPSREALER----------------DALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGMRQGWVVRDTAARGSRGGDAGAGGEKGGRNVGRVDDDFVYDGGRGSSSTLGAGSAAGDVGDHGRTSPGRGFPDDRSGGQEDRRAEVASDGGPRGEWGTLRLSDPDGFLFSNSVISSVFCELD 578
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A6H5K982_9PHAE (Radical SAM core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K982_9PHAE) HSP 1 Score: 243 bits (621), Expect = 8.570e-74 Identity = 146/325 (44.92%), Postives = 180/325 (55.38%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHA-----------GLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDN-----------------------------------------ALNTG---------------GLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLD 774
VEA T FG+W++PG+ PLP +ETCADMYR AS + + ++ISNYARPGF+S+HNRAYWENVPFLAFGNGAAS+VDG RFSRPRGL +YGQWV EL GW AT + G++++ SREA +R DAL +D+MLGFRLKEGLDL + +KYG A ++VEEG+T+G+R GWV+RD T + A N G G G DR+ + A G RG LRLSDP+GFLFSNSVISSVFC+LD
Sbjct: 213 VEAGTPFGRWFSPGEAPLPEDETCADMYRTASRVLGRAGYGHYEISNYARPGFQSRHNRAYWENVPFLAFGNGAASFVDGHRFSRPRGLPEYGQWVGELEEEGWAKATGAPRRTACEEVLPGGGGMGDGGGVEESRPSREALER----------------DALLDDVMLGFRLKEGLDLRVVASKYGHSAARRVEEGATEGLRLGWVVRDAAATGSHGGDVGAGGEKSGRNVDRVDDDFVYDGGRRSSSSTLGAGSAAGNVGDHGRTSPGRGLPDYRGGGHEDRTAEVASNSGPRG-EWGTLRLSDPDGFLFSNSVISSVFCELD 520
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: K9VZK7_9CYAN (Heme chaperone HemW n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VZK7_9CYAN) HSP 1 Score: 159 bits (401), Expect = 2.350e-42 Identity = 94/259 (36.29%), Postives = 144/259 (55.60%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDE 777
+E+ TAFG+ Y PG PLP +ET A+MYR A + + ++ISNY++PG++ +HNR YWEN P+ AFG GA+SYVDG RF+RPR +Y +WV +L + N+ + ++S + L E +MLG R+ EGL L L ++G I+++ + D ++GWV ++++ + L LGEI + Q + G R+RLSDPEGFLFSN++++++F KL E
Sbjct: 217 IESVTAFGRQYQPGDKPLPTDETAANMYRLAQQVLTSKGYQHYEISNYSQPGYQCRHNRVYWENRPYYAFGMGASSYVDGCRFTRPRKTREYYEWVQQL---------------TQNNGTFECPQIS--------------------ENEVLLETLMLGLRMAEGLSLQTLAEQFGEETIQQIWDCLQDYCKQGWV--EILDKNCGLIK--LGEIKYNN----QFPNAG----RIRLSDPEGFLFSNTILATLFSKLGE 428
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: K9WMG2_9CYAN (Heme chaperone HemW n=4 Tax=Oscillatoriales TaxID=1150 RepID=K9WMG2_9CYAN) HSP 1 Score: 158 bits (400), Expect = 3.990e-42 Identity = 101/258 (39.15%), Postives = 136/258 (52.71%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLD 774
+E TAFG+ Y PG PLP ++T A MYR A + + ++ISNYA PG + +HNR YWEN P+ FG GAASYV GRRF+RPR DY WV +LI +G L + ELS D L E +MLG RL EG++L L+ K+G + ++ + +GW+ +VVE D A+ ID+ ++ S G RLRLSDPEGFLFSN+V++ +F LD
Sbjct: 232 IEPVTAFGRQYAPGAKPLPTDDTAAQMYRLAQQILTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVQGRRFTRPRTRWDYYAWVQQLIEA--DGV-------------LDEPELS--------------------ETDVLLETLMLGLRLAEGVNLSTLIQKFGDKTLEPIWTALHPYFYKGWI--EVVEEDRAV-------IDQPNPQ--KLPSNG----RLRLSDPEGFLFSNTVLADLFKNLD 439
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A6P0P2T1_9CYAN (Heme chaperone HemW n=14 Tax=Okeania TaxID=1458928 RepID=A0A6P0P2T1_9CYAN) HSP 1 Score: 158 bits (399), Expect = 5.180e-42 Identity = 97/260 (37.31%), Postives = 141/260 (54.23%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDES 780
VEA TAFG++Y PG PLP +ET A MYR A + + ++ISNYA+P ++ HNR YWEN+P+ FG GAASYV G RF+RP +Y QWV + + R ++ +D S H G+ ++NN L+A Q+ L E +MLGFRL +G++L L ++G + + ++ + GWV +N G+ + + G LRL+DPEGFLFSN+V+S++F KL S
Sbjct: 207 VEAVTAFGRYYQPGNPPLPTDETAAQMYRMAQQLISISGYEHYEISNYAKPDYQCGHNRVYWENLPYYGFGMGAASYVAGERFTRPPTRKEYYQWV-QSVDRQYK---LSLQDRSFKHQGID---------------TSNN--CLEANQECLLETLMLGFRLADGINLSTLSQRFGQQTVDQILIYLQPYQKLGWV--------ELINPKGIVTLFSNNQKFPVEGY-------LRLTDPEGFLFSNTVLSTLFSKLSNS 430
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A2G4F2W9_9CYAN (Heme chaperone HemW n=2 Tax=Tychonema TaxID=54312 RepID=A0A2G4F2W9_9CYAN) HSP 1 Score: 157 bits (398), Expect = 6.980e-42 Identity = 97/259 (37.45%), Postives = 142/259 (54.83%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDE 777
VE TAFG+++ G+ PLP +ET A MYR A + + ++ISNYARPG++ +HNR YWEN + FG GAASYV+G R +RPR +Y QWV + S DA+L + Q L + + L E +MLGFRL EGL L L K+G + ++K+ + R+GWV +VV+ + + G + + +D A + G LRLSDPEGFLFSN++++++F KL++
Sbjct: 203 VEPVTAFGRYFQAGEQPLPADETAAQMYRLAREILTNSGYEHYEISNYARPGYQCRHNRVYWENRAYYGFGMGAASYVEGVRLTRPRKTQEYYQWVRSI----------------SPINSQPDADL-----------TIIKQDFLMSENEVLLETLMLGFRLAEGLSLSVLADKFGQKTVEKIWQCLQPYWRQGWV--EVVDANGTIPYG-IASLHAISDEAELLPLSG----NLRLSDPEGFLFSNTILATLFDKLED 427
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A3C0N230_9CYAN (Heme chaperone HemW n=1 Tax=Cyanobacteria bacterium UBA8543 TaxID=2055766 RepID=A0A3C0N230_9CYAN) HSP 1 Score: 155 bits (392), Expect = 4.010e-41 Identity = 98/258 (37.98%), Postives = 132/258 (51.16%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDA-ELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKL 771
VE TAFG+ Y PG PLP +ET A MYR A + + ++ISNYA PG + +HNR YWEN P+ FG GAASYVDGRRF+R R +Y WV +LI G G+ D ELS D L E++MLG RL EGL L L+ ++G + ++++ R GWV ++V TD + A Q + +LRLSDPEGFLFSN++++ +F +L
Sbjct: 212 VEPVTAFGRQYAPGAKPLPTDETAAQMYRVAQQVLTRAGYEHYEISNYALPGHQCRHNRVYWENRPYYGFGMGAASYVDGRRFTRGRTRREYYTWVQQLIDAG----------------GVMDCPELS--------------------ESDVLLENLMLGLRLAEGLSLSTLILQFGEKTLEQIWTSLQPYYRNGWV--EIVGTDGKVI-------------AVQNDQKLMMTGQLRLSDPEGFLFSNTILADLFSQL 418
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: UPI00177D00C7 (Coproporphyrinogen III oxidase n=1 Tax=Microcoleus sp. FACHB-SPT15 TaxID=2692830 RepID=UPI00177D00C7) HSP 1 Score: 153 bits (387), Expect = 2.120e-40 Identity = 100/257 (38.91%), Postives = 128/257 (49.81%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKL 771
+E TAFG+ Y PG PLP +ET A MYR A + + ++ISNYA PG +HNR YWEN P+ FG GAASYV G RF+RPR +Y WV +LI G G+ D+ P T+ D L E +MLG RL EGL LD L ++G + +K++ RRGWV LN G E T G +LRLSDPEGFLFSN+V++ +F +L
Sbjct: 213 IEPVTAFGRQYAPGVKPLPTDETAAKMYRLAQHILTSAGYEHYEISNYALPGKACRHNRVYWENRPYYGFGMGAASYVQGYRFTRPRTRREYYAWVQQLIDAG----------------GVLDS------------PETS-------AADILLETLMLGLRLAEGLSLDKLRNQFGEKTLKEIWTSLQPHYRRGWV--------EVLNASG--EAVEDTQAVPTTG-------QLRLSDPEGFLFSNTVLADLFSQL 417
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: B4VWX2_9CYAN (Heme chaperone HemW n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VWX2_9CYAN) HSP 1 Score: 153 bits (386), Expect = 2.490e-40 Identity = 94/259 (36.29%), Postives = 132/259 (50.97%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKLDE 777
+E TAFG+ Y+PG +PLP +ET A MYR A + + ++ISNYA P + +HNR YWEN PF FG GAASY+ RRF+RPR +Y WV++ I G G+ D+ LSR D L E +MLG RL +GL L AL K+G I+++ + +GW+ +V D ++ ID Q S R+RLSDP GFLFSN++++ +F ++ E
Sbjct: 200 IEPVTAFGRQYSPGISPLPTDETTAQMYRLAQQLLTDAGYEHYEISNYALPTHQCRHNRVYWENRPFYGFGMGAASYIQARRFTRPRTRREYYAWVEQFIQAG----------------GVLDSPLSRTT-------------------DILLETVMLGLRLADGLSLSALREKFGETLIERIWRSLQPSVDKGWIT--IVTPDGSV-------IDM------QAVSNRPISGRIRLSDPNGFLFSNTILADIFKEIGE 408
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Match: A0A367QS50_9NOSO (Heme chaperone HemW n=2 Tax=Nostocaceae TaxID=1162 RepID=A0A367QS50_9NOSO) HSP 1 Score: 151 bits (381), Expect = 1.060e-39 Identity = 90/257 (35.02%), Postives = 129/257 (50.19%), Query Frame = 1
Query: 1 VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARPGFESKHNRAYWENVPFLAFGNGAASYVDGRRFSRPRGLSDYGQWVDELIVRGWEGATAFAEDASSNHAGLKDAELSREAAKRAINPSTNNQQHLDARQDALYEDIMLGFRLKEGLDLDALVAKYGSRAIKKVEEGSTDGIRRGWVLRDVVETDNALNTGGLGEIDRSTDGAGQVGSRGCRRRRLRLSDPEGFLFSNSVISSVFCKL 771
+E TAFG++Y PG +PLP +ET MY+ + + ++ISNYA+PG + +HNR YWEN P+ FG GAASYVDG+RF+RPR +Y +WV +LI G G+ D E++ ++ L E +MLG RL EGL+L LV K+G + +K++ + +GWV ++VE RLRL DP+GFLFSN V++ +F L
Sbjct: 207 IEPGTAFGRYYKPGDSPLPTDETTVKMYQMGQQVLTGAGYKHYEISNYAQPGHQCRHNRVYWENRPYYGFGMGAASYVDGKRFTRPRKTQEYYRWVQDLIANG----------------GVIDWEVT-------------------PPEEILLETLMLGLRLAEGLNLADLVEKFGEQKVKEIHKCLRSHFEKGWV--EIVEG------------------------------RLRLCDPDGFLFSNVVLAELFSHL 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141874.2898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig141874.2898.1 >prot_H-elongata_contig141874.2898.1 ID=prot_H-elongata_contig141874.2898.1|Name=mRNA_H-elongata_contig141874.2898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp VEARTAFGKWYTPGKTPLPYEETCADMYRRASSMPCFILFYFFQISNYARback to top mRNA from alignment at H-elongata_contig141874:208..1553+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig141874.2898.1 ID=mRNA_H-elongata_contig141874.2898.1|Name=mRNA_H-elongata_contig141874.2898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1346bp|location=Sequence derived from alignment at H-elongata_contig141874:208..1553+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig141874:208..1553+ >mRNA_H-elongata_contig141874.2898.1 ID=mRNA_H-elongata_contig141874.2898.1|Name=mRNA_H-elongata_contig141874.2898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig141874:208..1553+ (Himanthalia elongata Himel1 dioecious)back to top |