mRNA_H-elongata_contig141758.2889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141758.2889.1
Unique NamemRNA_H-elongata_contig141758.2889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR)

HSP 1 Score: 70.5 bits (171), Expect = 1.510e-11
Identity = 35/96 (36.46%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVF 303
            EVL+R D   I   + +  L + G VARM D+RLP +++ GE+  GKR +G   KR +  +     A  I+P  W  AAQD  +W   ++ GA+ +
Sbjct:  816 EVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSY 911          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 69.3 bits (168), Expect = 3.350e-11
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVFMPAWSTKRVNE 336
            EVL R  C  +E+ + KR L + G + RM D+RLP I++ GE+  G R  G+  KR +  + +   +  +  + W   A+D   W   + TG + F  A  T+R+ +
Sbjct:  278 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF-EAGRTERIRQ 383          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 69.3 bits (168), Expect = 3.730e-11
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVFMPAWSTKRVNE 336
            EVL R  C  +E+ + KR L + G + RM D+RLP I++ GE+  G R  G+  KR +  + +   +  +  + W   A+D   W   + TG + F  A  T+R+ +
Sbjct:  564 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSF-EAGRTERIRQ 669          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 65.9 bits (159), Expect = 4.000e-10
Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVF 303
            EVL R  C  +E+ + KR L + G + RM D+RLP I++ GE+  G R  G+  KR +  + +   +  +  + W   A+D   W   + TG  + 
Sbjct:  211 EVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGGSMI 306          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA)

HSP 1 Score: 62.0 bits (149), Expect = 6.090e-9
Identity = 35/121 (28.93%), Postives = 55/121 (45.45%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVFMPAWSTKRVNETNARHARELFAALP 378
            EVL R +   +   + K    + G V RM D R+P +++ GE+  GKR  G+   R +  +     ++ I    W   A D P+W   V  GA++     ST   ++  AR  R+   A P
Sbjct:   93 EVLTRANMLSVHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWEVIAADRPQWRGAVHQGAQLAETRRSTLAASKREARKVRDENPAQP 213          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A6P8U4Y6_GYMAC (LOW QUALITY PROTEIN: uncharacterized protein LOC117545945 n=1 Tax=Gymnodraco acuticeps TaxID=8218 RepID=A0A6P8U4Y6_GYMAC)

HSP 1 Score: 56.6 bits (135), Expect = 1.060e-6
Identity = 30/96 (31.25%), Postives = 46/96 (47.92%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVF 303
            EVL +T C  IEA++ +  L + G V RM  +RLP  V+ G++  G+R  G   KR +  +        I P+    AA D   W +    G ++ 
Sbjct:  878 EVLSKTSCRSIEATITQHQLRWLGHVVRMPSNRLPRRVLYGQLHHGRRSAGGQKKRYKDQLKTALKKCKIRPEALEDAAADRNTWRQLCRDGTQML 973          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A7M3R7Z1_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3R7Z1_SPIER)

HSP 1 Score: 53.1 bits (126), Expect = 9.770e-6
Identity = 30/96 (31.25%), Postives = 50/96 (52.08%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVF 303
            +VL RT    I+  V++  L ++GR+ RMHD+RL      G++  G R+ G    R ++ +      + I+PK W   AQD     R ++TG  ++
Sbjct:    4 KVLKRTGILGIQ--VVQLQLRWSGRLLRMHDERLSKRRFYGDVATGARRHGGQTHRCKNTLKLPLKCLQINPKSWGGLAQDRSVRRRTIKTGTTIY 97          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A8J9ZFI4_BRALA (Hypp998 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZFI4_BRALA)

HSP 1 Score: 50.8 bits (120), Expect = 1.690e-5
Identity = 27/93 (29.03%), Postives = 43/93 (46.24%), Query Frame = 1
Query:  100 MHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVFMPAWSTKRVNETNARHARELFAALP 378
            M D R+P +++ GE+  GKR  G+   R +  +     ++ I    W   A D P+W   V  GA++     ST   ++  AR  R+   A P
Sbjct:    1 MDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPVDSWEVIAADRPQWRGAVHQGAQLAETRRSTLAASKREARKVRDENPAQP 93          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT)

HSP 1 Score: 52.4 bits (124), Expect = 2.860e-5
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 1
Query:   16 EVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVGGKRKRGQSAKRLEH 192
            EVL R  C  IE+ + KR L + G + RM D+RLP I++ GE+  G R  G+  KR  H
Sbjct:  294 EVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRTSH 352          
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Match: A0A8J9YSJ6_BRALA (Hypp5883 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YSJ6_BRALA)

HSP 1 Score: 49.7 bits (117), Expect = 4.730e-5
Identity = 29/93 (31.18%), Postives = 40/93 (43.01%), Query Frame = 1
Query:  100 MHDDRLPNIVMRGEMVGGKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEVFMPAWSTKRVNETNARHARELFAALP 378
            MHD R+P I++ GE+   KR  G+   R      E   ++ I  + W   A D  +W   V  G  +     ST    +  AR ARE   A P
Sbjct:    1 MHDQRIPKILLYGELAEEKRPSGRPKLRYNDNFKETLKSLSIPVENWEDIAPDRLQWRGAVHQGERLAETRRSTLAATKREARKAREENPAQP 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141758.2889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A8C5PP25_9ANUR1.510e-1136.46Reverse transcriptase domain-containing protein n=... [more]
A0A6S7K883_PARCT3.350e-1131.78RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT3.730e-1131.78RNA-directed DNA polymerase from mobile element jo... [more]
A0A6S7JKI9_PARCT4.000e-1031.25Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A8J9Z756_BRALA6.090e-928.93Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A6P8U4Y6_GYMAC1.060e-631.25LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
A0A7M3R7Z1_SPIER9.770e-631.25Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A8J9ZFI4_BRALA1.690e-529.03Hypp998 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
A0A6S7JBE9_PARCT2.860e-544.07Reverse transcriptase domain-containing protein (F... [more]
A0A8J9YSJ6_BRALA4.730e-531.18Hypp5883 protein n=1 Tax=Branchiostoma lanceolatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141758contigH-elongata_contig141758:1156..1548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.6
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog13735.ENSPSIP00000001313
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.2517722-CDS-H-elongata_contig141758:1155..15481622929842.2517722-CDS-H-elongata_contig141758:1155..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141758 1156..1548 +
1691679179.5268736-CDS-H-elongata_contig141758:1155..15481691679179.5268736-CDS-H-elongata_contig141758:1155..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141758 1156..1548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141758.2889.1prot_H-elongata_contig141758.2889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141758 1156..1548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141758.2889.1

>prot_H-elongata_contig141758.2889.1 ID=prot_H-elongata_contig141758.2889.1|Name=mRNA_H-elongata_contig141758.2889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MLSYLEVLLRTDCECIEASVMKRILHYTGRVARMHDDRLPNIVMRGEMVG
GKRKRGQSAKRLEHCVTEYCTAIGIDPKCWMRAAQDAPEWHRKVETGAEV
FMPAWSTKRVNETNARHARELFAALPFDLL*
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mRNA from alignment at H-elongata_contig141758:1156..1548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141758.2889.1 ID=mRNA_H-elongata_contig141758.2889.1|Name=mRNA_H-elongata_contig141758.2889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig141758:1156..1548+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTGTGAGTGCATTGA GGCTTCTGTGATGAAGCGCATCCTCCACTACACCGGCCGCGTCGCGCGCA TGCACGACGATCGTCTTCCCAACATCGTCATGCGTGGCGAAATGGTCGGA GGGAAGAGAAAACGGGGCCAGTCTGCGAAACGCCTCGAACACTGCGTCAC GGAATACTGCACTGCTATCGGGATCGACCCGAAGTGTTGGATGCGGGCCG CCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACGGGAGCTGAAGTC TTCATGCCGGCCTGGTCCACCAAGCGTGTAAACGAGACCAACGCCCGCCA CGCAAGGGAACTTTTCGCTGCTTTGCCGTTTGATCTCCTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig141758:1156..1548+

>mRNA_H-elongata_contig141758.2889.1 ID=mRNA_H-elongata_contig141758.2889.1|Name=mRNA_H-elongata_contig141758.2889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig141758:1156..1548+ (Himanthalia elongata Himel1 dioecious)
ATGCTCTCATACCTCGAGGTCCTCCTCAGGACTGACTGTGAGTGCATTGA
GGCTTCTGTGATGAAGCGCATCCTCCACTACACCGGCCGCGTCGCGCGCA
TGCACGACGATCGTCTTCCCAACATCGTCATGCGTGGCGAAATGGTCGGA
GGGAAGAGAAAACGGGGCCAGTCTGCGAAACGCCTCGAACACTGCGTCAC
GGAATACTGCACTGCTATCGGGATCGACCCGAAGTGTTGGATGCGGGCCG
CCCAAGATGCACCTGAGTGGCACCGTAAAGTAGAGACGGGAGCTGAAGTC
TTCATGCCGGCCTGGTCCACCAAGCGTGTAAACGAGACCAACGCCCGCCA
CGCAAGGGAACTTTTCGCTGCTTTGCCGTTTGATCTCCTATGAATGCTCT
CATACCTCGAGGTCCTCCTCAGGACTGACTGTGAGTGCATTGAGGCTTCT
GTGATGAAGCGCATCCTCCACTACACCGGCCGCGTCGCGCGCATGCACGA
CGATCGTCTTCCCAACATCGTCATGCGTGGCGAAATGGTCGGAGGGAAGA
GAAAACGGGGCCAGTCTGCGAAACGCCTCGAACACTGCGTCACGGAATAC
TGCACTGCTATCGGGATCGACCCGAAGTGTTGGATGCGGGCCGCCCAAGA
TGCACCTGAGTGGCACCGTAAAGTAGAGACGGGAGCTGAAGTCTTCATGC
CGGCCTGGTCCACCAAGCGTGTAAACGAGACCAACGCCCGCCACGCAAGG
GAACTTTTCGCTGCTTTGCCGTTTGATCTCCTATGA
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