mRNA_H-elongata_contig14169.2887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14169.2887.1
Unique NamemRNA_H-elongata_contig14169.2887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14169.2887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14169contigH-elongata_contig14169:4054..5805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1752
Cds size1752
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.1623871-CDS-H-elongata_contig14169:4053..58051622929842.1623871-CDS-H-elongata_contig14169:4053..5805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14169 4054..5805 -
1691679179.5063605-CDS-H-elongata_contig14169:4053..58051691679179.5063605-CDS-H-elongata_contig14169:4053..5805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14169 4054..5805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14169.2887.1prot_H-elongata_contig14169.2887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14169 4054..5805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14169.2887.1

>prot_H-elongata_contig14169.2887.1 ID=prot_H-elongata_contig14169.2887.1|Name=mRNA_H-elongata_contig14169.2887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=584bp
TSAPSTFAPVTLAPTTPIPITSDLVTPAPITPAPVTPAPIAQALITPAPV
TPTPITQIPIISIPVTPAPMTSAPITPGPVTPAPFTPPLITLAPIMPAPV
TTSPIMPASITTAPITPTPITPVPNTPALTTQIPIRPILVTLAPMTPGPT
TLTPITPSSVTPTPITPGPMTTTPMTPAPVTPAPVTSAPITSIRVISAPF
TYTPVTPAPTTPVPITPALVTPAPITQAAVTPAPIAQVLITSAPVTPAPI
TPTLITQTSITPIPVTPAPMTSSPMKPTPTTHVSITPTPVTVAPVTPTLI
TLAPIIPGPVTPSPIMPASITRTPITPASVTPAPITPTLTIQIPITPITV
TFAPMTPGPITLTSIAPSPITPAPITPGPMIPTPTTPVPITPAPVTPAPV
TPSSVTSIQVTSAFSTSASVTPAPPMSIPITPAFVTPAPITPAPVTTAPI
AQVLITPAPITSAPITPPVITQIPITPLPVTPAPVTLIPITPAPVTVSPV
ISAPFTASPVTPAPVIPTPVTPPPGVSTPVMPVQVTSAPVIPTLITPTSA
TPALDLQTSFTLNPIIPTSNELTPGAPAQVTPAP
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mRNA from alignment at H-elongata_contig14169:4054..5805-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14169.2887.1 ID=mRNA_H-elongata_contig14169.2887.1|Name=mRNA_H-elongata_contig14169.2887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1752bp|location=Sequence derived from alignment at H-elongata_contig14169:4054..5805- (Himanthalia elongata Himel1 dioecious)
ACATCTGCTCCTTCCACCTTTGCTCCAGTTACTCTTGCCCCGACCACGCC
TATACCGATCACGTCTGATTTGGTCACTCCTGCACCGATCACGCCAGCTC
CGGTGACGCCTGCCCCGATAGCCCAGGCACTCATCACGCCCGCCCCCGTC
ACTCCCACACCGATCACCCAGATCCCGATCATATCCATTCCCGTCACTCC
CGCACCGATGACGTCTGCCCCGATCACGCCCGGGCCGGTCACACCCGCTC
CGTTCACGCCTCCCCTGATCACCCTGGCTCCAATTATGCCCGCCCCCGTC
ACTACCTCACCGATTATGCCTGCCTCAATCACTACCGCCCCGATCACGCC
CACCCCTATCACTCCCGTACCGAACACCCCGGCCTTGACCACCCAGATCC
CAATCAGACCCATCCTCGTCACTCTCGCACCGATGACGCCTGGTCCGACC
ACGCTTACCCCGATCACACCCTCCTCCGTCACTCCTACACCGATTACGCC
TGGTCCGATGACGACTACCCCAATGACGCCTGCTCCGGTCACACCCGCTC
CGGTCACCTCTGCCCCAATCACCTCAATCCGGGTTATATCTGCTCCTTTC
ACCTATACTCCGGTTACTCCTGCTCCGACCACGCCTGTACCGATCACGCC
CGCTTTGGTCACTCCTGCACCGATCACGCAAGCTGCGGTGACGCCTGCCC
CGATAGCCCAGGTGCTCATCACATCCGCCCCCGTCACTCCCGCCCCAATA
ACCCCGACCCTGATCACCCAGACCTCGATCACACCCATCCCCGTCACTCC
TGCACCGATGACATCCAGTCCGATGAAACCTACCCCGACGACGCATGTCT
CGATCACACCCACGCCGGTCACAGTCGCTCCAGTCACGCCTACCCTGATC
ACCCTGGCTCCAATTATTCCCGGCCCCGTCACTCCCTCACCGATTATGCC
TGCCTCAATCACTCGCACCCCGATCACGCCCGCTTCTGTTACTCCCGCAC
CGATCACCCCTACCCTGACCATCCAGATCCCGATTACACCCATCACCGTC
ACTTTCGCACCGATGACGCCCGGTCCGATCACGCTTACCTCGATCGCACC
TTCCCCCATTACTCCTGCGCCGATTACGCCTGGTCCGATGATACCTACCC
CGACGACGCCTGTCCCGATCACGCCCGCGCCGGTCACACCCGCCCCGGTC
ACTCCTTCCTCAGTCACCTCAATCCAGGTTACATCCGCTTTTTCCACCTC
TGCTTCGGTTACTCCTGCACCGCCCATGTCTATACCGATCACGCCCGCTT
TCGTCACTCCTGCACCGATCACGCCAGCTCCAGTGACGACTGCCCCCATA
GCCCAGGTGCTCATCACGCCCGCCCCCATCACTTCCGCCCCAATAACCCC
GCCCGTGATCACCCAGATCCCGATCACACCCCTCCCCGTCACACCCGCTC
CGGTCACCCTTATCCCGATCACTCCGGCCCCGGTTACGGTCTCCCCAGTT
ATCTCCGCTCCGTTTACTGCGTCACCGGTTACGCCCGCACCGGTGATACC
GACTCCGGTGACGCCTCCACCGGGCGTATCCACCCCGGTTATGCCCGTTC
AGGTTACGTCCGCACCGGTTATCCCTACTCTGATCACACCGACCTCGGCC
ACACCTGCCCTAGATCTTCAAACTTCGTTTACTTTGAACCCGATCATACC
CACCTCGAACGAACTCACCCCGGGCGCACCCGCACAAGTTACGCCGGCTC
CG
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Coding sequence (CDS) from alignment at H-elongata_contig14169:4054..5805-

>mRNA_H-elongata_contig14169.2887.1 ID=mRNA_H-elongata_contig14169.2887.1|Name=mRNA_H-elongata_contig14169.2887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3504bp|location=Sequence derived from alignment at H-elongata_contig14169:4054..5805- (Himanthalia elongata Himel1 dioecious)
ACATCTGCTCCTTCCACCTTTGCTCCAGTTACTCTTGCCCCGACCACGCC
TATACCGATCACGTCTGATTTGGTCACTCCTGCACCGATCACGCCAGCTC
CGGTGACGCCTGCCCCGATAGCCCAGGCACTCATCACGCCCGCCCCCGTC
ACTCCCACACCGATCACCCAGATCCCGATCATATCCATTCCCGTCACTCC
CGCACCGATGACGTCTGCCCCGATCACGCCCGGGCCGGTCACACCCGCTC
CGTTCACGCCTCCCCTGATCACCCTGGCTCCAATTATGCCCGCCCCCGTC
ACTACCTCACCGATTATGCCTGCCTCAATCACTACCGCCCCGATCACGCC
CACCCCTATCACTCCCGTACCGAACACCCCGGCCTTGACCACCCAGATCC
CAATCAGACCCATCCTCGTCACTCTCGCACCGATGACGCCTGGTCCGACC
ACGCTTACCCCGATCACACCCTCCTCCGTCACTCCTACACCGATTACGCC
TGGTCCGATGACGACTACCCCAATGACGCCTGCTCCGGTCACACCCGCTC
CGGTCACCTCTGCCCCAATCACCTCAATCCGGGTTATATCTGCTCCTTTC
ACCTATACTCCGGTTACTCCTGCTCCGACCACGCCTGTACCGATCACGCC
CGCTTTGGTCACTCCTGCACCGATCACGCAAGCTGCGGTGACGCCTGCCC
CGATAGCCCAGGTGCTCATCACATCCGCCCCCGTCACTCCCGCCCCAATA
ACCCCGACCCTGATCACCCAGACCTCGATCACACCCATCCCCGTCACTCC
TGCACCGATGACATCCAGTCCGATGAAACCTACCCCGACGACGCATGTCT
CGATCACACCCACGCCGGTCACAGTCGCTCCAGTCACGCCTACCCTGATC
ACCCTGGCTCCAATTATTCCCGGCCCCGTCACTCCCTCACCGATTATGCC
TGCCTCAATCACTCGCACCCCGATCACGCCCGCTTCTGTTACTCCCGCAC
CGATCACCCCTACCCTGACCATCCAGATCCCGATTACACCCATCACCGTC
ACTTTCGCACCGATGACGCCCGGTCCGATCACGCTTACCTCGATCGCACC
TTCCCCCATTACTCCTGCGCCGATTACGCCTGGTCCGATGATACCTACCC
CGACGACGCCTGTCCCGATCACGCCCGCGCCGGTCACACCCGCCCCGGTC
ACTCCTTCCTCAGTCACCTCAATCCAGGTTACATCCGCTTTTTCCACCTC
TGCTTCGGTTACTCCTGCACCGCCCATGTCTATACCGATCACGCCCGCTT
TCGTCACTCCTGCACCGATCACGCCAGCTCCAGTGACGACTGCCCCCATA
GCCCAGGTGCTCATCACGCCCGCCCCCATCACTTCCGCCCCAATAACCCC
GCCCGTGATCACCCAGATCCCGATCACACCCCTCCCCGTCACACCCGCTC
CGGTCACCCTTATCCCGATCACTCCGGCCCCGGTTACGGTCTCCCCAGTT
ATCTCCGCTCCGTTTACTGCGTCACCGGTTACGCCCGCACCGGTGATACC
GACTCCGGTGACGCCTCCACCGGGCGTATCCACCCCGGTTATGCCCGTTC
AGGTTACGTCCGCACCGGTTATCCCTACTCTGATCACACCGACCTCGGCC
ACACCTGCCCTAGATCTTCAAACTTCGTTTACTTTGAACCCGATCATACC
CACCTCGAACGAACTCACCCCGGGCGCACCCGCACAAGTTACGCCGGCTC
CGACATCTGCTCCTTCCACCTTTGCTCCAGTTACTCTTGCCCCGACCACG
CCTATACCGATCACGTCTGATTTGGTCACTCCTGCACCGATCACGCCAGC
TCCGGTGACGCCTGCCCCGATAGCCCAGGCACTCATCACGCCCGCCCCCG
TCACTCCCACACCGATCACCCAGATCCCGATCATATCCATTCCCGTCACT
CCCGCACCGATGACGTCTGCCCCGATCACGCCCGGGCCGGTCACACCCGC
TCCGTTCACGCCTCCCCTGATCACCCTGGCTCCAATTATGCCCGCCCCCG
TCACTACCTCACCGATTATGCCTGCCTCAATCACTACCGCCCCGATCACG
CCCACCCCTATCACTCCCGTACCGAACACCCCGGCCTTGACCACCCAGAT
CCCAATCAGACCCATCCTCGTCACTCTCGCACCGATGACGCCTGGTCCGA
CCACGCTTACCCCGATCACACCCTCCTCCGTCACTCCTACACCGATTACG
CCTGGTCCGATGACGACTACCCCAATGACGCCTGCTCCGGTCACACCCGC
TCCGGTCACCTCTGCCCCAATCACCTCAATCCGGGTTATATCTGCTCCTT
TCACCTATACTCCGGTTACTCCTGCTCCGACCACGCCTGTACCGATCACG
CCCGCTTTGGTCACTCCTGCACCGATCACGCAAGCTGCGGTGACGCCTGC
CCCGATAGCCCAGGTGCTCATCACATCCGCCCCCGTCACTCCCGCCCCAA
TAACCCCGACCCTGATCACCCAGACCTCGATCACACCCATCCCCGTCACT
CCTGCACCGATGACATCCAGTCCGATGAAACCTACCCCGACGACGCATGT
CTCGATCACACCCACGCCGGTCACAGTCGCTCCAGTCACGCCTACCCTGA
TCACCCTGGCTCCAATTATTCCCGGCCCCGTCACTCCCTCACCGATTATG
CCTGCCTCAATCACTCGCACCCCGATCACGCCCGCTTCTGTTACTCCCGC
ACCGATCACCCCTACCCTGACCATCCAGATCCCGATTACACCCATCACCG
TCACTTTCGCACCGATGACGCCCGGTCCGATCACGCTTACCTCGATCGCA
CCTTCCCCCATTACTCCTGCGCCGATTACGCCTGGTCCGATGATACCTAC
CCCGACGACGCCTGTCCCGATCACGCCCGCGCCGGTCACACCCGCCCCGG
TCACTCCTTCCTCAGTCACCTCAATCCAGGTTACATCCGCTTTTTCCACC
TCTGCTTCGGTTACTCCTGCACCGCCCATGTCTATACCGATCACGCCCGC
TTTCGTCACTCCTGCACCGATCACGCCAGCTCCAGTGACGACTGCCCCCA
TAGCCCAGGTGCTCATCACGCCCGCCCCCATCACTTCCGCCCCAATAACC
CCGCCCGTGATCACCCAGATCCCGATCACACCCCTCCCCGTCACACCCGC
TCCGGTCACCCTTATCCCGATCACTCCGGCCCCGGTTACGGTCTCCCCAG
TTATCTCCGCTCCGTTTACTGCGTCACCGGTTACGCCCGCACCGGTGATA
CCGACTCCGGTGACGCCTCCACCGGGCGTATCCACCCCGGTTATGCCCGT
TCAGGTTACGTCCGCACCGGTTATCCCTACTCTGATCACACCGACCTCGG
CCACACCTGCCCTAGATCTTCAAACTTCGTTTACTTTGAACCCGATCATA
CCCACCTCGAACGAACTCACCCCGGGCGCACCCGCACAAGTTACGCCGGC
TCCG
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