mRNA_H-elongata_contig141646.2884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141646.2884.1
Unique NamemRNA_H-elongata_contig141646.2884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141646.2884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141646contigH-elongata_contig141646:1098..1660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size529
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141646.2884.1prot_H-elongata_contig141646.2884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141646 1189..1597 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.9590757-UTR-H-elongata_contig141646:1097..11881622929841.9590757-UTR-H-elongata_contig141646:1097..1188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141646 1098..1188 +
1691679179.401459-UTR-H-elongata_contig141646:1097..11881691679179.401459-UTR-H-elongata_contig141646:1097..1188Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141646 1098..1188 +
1622929842.0190172-UTR-H-elongata_contig141646:1597..16601622929842.0190172-UTR-H-elongata_contig141646:1597..1660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141646 1598..1660 +
1691679179.4374564-UTR-H-elongata_contig141646:1597..16601691679179.4374564-UTR-H-elongata_contig141646:1597..1660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141646 1598..1660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.9753861-CDS-H-elongata_contig141646:1188..14241622929841.9753861-CDS-H-elongata_contig141646:1188..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141646 1189..1424 +
1691679179.417383-CDS-H-elongata_contig141646:1188..14241691679179.417383-CDS-H-elongata_contig141646:1188..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141646 1189..1424 +
1622929842.00246-CDS-H-elongata_contig141646:1458..15971622929842.00246-CDS-H-elongata_contig141646:1458..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141646 1459..1597 +
1691679179.4277399-CDS-H-elongata_contig141646:1458..15971691679179.4277399-CDS-H-elongata_contig141646:1458..1597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141646 1459..1597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141646.2884.1

>prot_H-elongata_contig141646.2884.1 ID=prot_H-elongata_contig141646.2884.1|Name=mRNA_H-elongata_contig141646.2884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MFDNLGRGGEGPGSPTMSSTHLTSISSAIDRVFQSLTQPSILLKQQKYYR
LLRQQQFATKRWINAIERGGRQGQIDNKESGASYYSSCPVLLCRLKPPSA
GSCTPQTYRWLVGPSSSLATVSIN*
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mRNA from alignment at H-elongata_contig141646:1098..1660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141646.2884.1 ID=mRNA_H-elongata_contig141646.2884.1|Name=mRNA_H-elongata_contig141646.2884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=563bp|location=Sequence derived from alignment at H-elongata_contig141646:1098..1660+ (Himanthalia elongata Himel1 dioecious)
CCCAATTACTCGTGACCCTTATCGTCCAAGGTCGATACCAATAATCAACG
ACCGTAAAGGTACATATCTGCCGCTGACTCAGGCGTAGACGATGTTTGAT
AATTTGGGAAGGGGGGGGGAGGGTCCGGGCTCACCAACAATGTCGTCGAC
TCATCTCACCTCGATCTCCTCGGCCATTGACCGAGTCTTTCAGTCCCTAA
CCCAACCGTCAATACTTCTCAAACAACAAAAATATTACCGTCTCTTGAGA
CAACAACAATTTGCCACAAAGCGATGGATCAATGCAATAGAGAGAGGTGG
TCGACAGGGACAAATAGACAACAAAGAGCTCTTGTATAATAATAATAATG
TACCACAGAAGAAGCGGGGCTAGCTATTACAGCAGCTGTCCCGTGTTGTT
GTGTCGTCTCAAACCTCCTTCCGCTGGTTCATGCACTCCACAGACATACC
GATGGTTGGTGGGACCTTCGTCCTCGTTAGCCACCGTTTCCATTAATTAG
CCTTCTATACTACTTAATGTATGTTTCAATAATATTTTTATAAAAAAAAA
ACTAACTCATTCC
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Coding sequence (CDS) from alignment at H-elongata_contig141646:1098..1660+

>mRNA_H-elongata_contig141646.2884.1 ID=mRNA_H-elongata_contig141646.2884.1|Name=mRNA_H-elongata_contig141646.2884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig141646:1098..1660+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGATAATTTGGGAAGGGGGGGGGAGGGTCCGGGCTCACCAACAAT
GTCGTCGACTCATCTCACCTCGATCTCCTCGGCCATTGACCGAGTCTTTC
AGTCCCTAACCCAACCGTCAATACTTCTCAAACAACAAAAATATTACCGT
CTCTTGAGACAACAACAATTTGCCACAAAGCGATGGATCAATGCAATAGA
GAGAGGTGGTCGACAGGGACAAATAGACAACAAAGAATGTTTGATAATTT
GGGAAGGGGGGGGGAGGGTCCGGGCTCACCAACAATGTCGTCGACTCATC
TCACCTCGATCTCCTCGGCCATTGACCGAGTCTTTCAGTCCCTAACCCAA
CCGTCAATACTTCTCAAACAACAAAAATATTACCGTCTCTTGAGACAACA
ACAATTTGCCACAAAGCGATGGATCAATGCAATAGAGAGAGGTGGTCGAC
AGGGACAAATAGACAACAAAGAAAGCGGGGCTAGCTATTACAGCAGCTGT
CCCGTGTTGTTGTGTCGTCTCAAACCTCCTTCCGCTGGTTCATGCACTCC
ACAGACATACCGATGGTTGGTGGGACCTTCGTCCTCGTTAGCCACCGTTT
CCATTAATTAGAAGCGGGGCTAGCTATTACAGCAGCTGTCCCGTGTTGTT
GTGTCGTCTCAAACCTCCTTCCGCTGGTTCATGCACTCCACAGACATACC
GATGGTTGGTGGGACCTTCGTCCTCGTTAGCCACCGTTTCCATTAATTAG
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