mRNA_H-elongata_contig141508.2883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141508.2883.1
Unique NamemRNA_H-elongata_contig141508.2883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: D7FT36_ECTSI (Aspartyl protease family A01A, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT36_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.680e-30
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 GDSSSRVNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            G    +VNV ELL FIFP SLQHPLSTGRLY+F ++GPLD ++ LR+G  G+R++STWEIDTMCLQFEREDILQV
Sbjct:   11 GKRDGKVNVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQV 85          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: A0A7S4A522_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A522_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.830e-21
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   19 SRVNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            S V++D+L+ F+FP  L HPLSTGRLY+F  +GPLD    LR+G  G+ +L  WE+D MC QFERED LQV
Sbjct:   76 SLVSIDDLISFVFPADLYHPLSTGRLYAFGFYGPLDRQQQLRSGPKGQHVLGRWELDAMCHQFEREDCLQV 146          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: A0A7S2B712_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B712_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.840e-21
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 1
Query:   31 VDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            ++ + RF+FP +LQHP+STGRL++F  +GPLD  A LR+G  G+ ++  WE+DTMC QFEREDILQ+
Sbjct:    1 LEAVKRFVFPQNLQHPMSTGRLFAFGFYGPLDADARLRSGHKGQHVVGNWELDTMCRQFEREDILQI 67          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: A0A7S3Y154_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y154_HETAK)

HSP 1 Score: 88.2 bits (217), Expect = 8.330e-19
Identity = 38/70 (54.29%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   22 RVNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            +V+++ L+ F+FP  LQHPLSTGRL++F ++GPLDE++ LR+G  G+ I+  +E+D MC +FERE ILQV
Sbjct:   41 QVSLESLMVFLFPPGLQHPLSTGRLFAFGLYGPLDENSQLRSGHKGQHIVQRFELDAMCQRFEREIILQV 110          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: A0A6G0WC23_9STRA (NDK domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WC23_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.660e-17
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   10 DSSSRVNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            +S+  V++D L++F+FP ++QH  STGRL+ F ++GPLD  + LR+G  G  +++  E+DTMCL  EREDIL V
Sbjct:  219 ESTCWVSLDALMQFLFPPNVQHANSTGRLFVFALYGPLDSKSRLRSGEKGLHVVTDGELDTMCLSMEREDILSV 292          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: A0A6A5AZ06_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AZ06_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.340e-16
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   19 SRVNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            S V++D L+ F+FP ++QHP STGRL+ F ++GPLD  + LR+G  G  +++  E++TMC+  EREDIL V
Sbjct:   28 STVHLDALMDFLFPPNVQHPNSTGRLFVFSLYGPLDAKSRLRSGEKGMHVVTDIELNTMCVSIEREDILSV 98          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: W4FQS8_9STRA (NDK domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQS8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.640e-16
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   25 VNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            V++D L+ F+FP ++QHP STGRL+ F ++GPLD  + LR+G  G  +++  E++TMC+  EREDIL V
Sbjct:  240 VHLDALMDFLFPPNVQHPNSTGRLFVFSLYGPLDAKSRLRSGEKGMHVVTDIELNTMCVSIEREDILSV 308          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: A0A835ZGK5_9STRA (Putative aspartyl protease family A01A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGK5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.020e-15
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 KCGD--------SSSRVNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            +CGD         ++RV +D+LL+FIFP  LQHPLS+GRL  F  +GP   +  L +G+ G+ ++  WE+D+MC   +RED+LQV
Sbjct:   12 ECGDCGIPRRRAKAARVFLDDLLKFIFPVHLQHPLSSGRLIVFGYYGP-PVNGQLHSGQRGEHVVGDWELDSMCTTIDREDVLQV 95          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: A0A024T968_9STRA (NDK domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T968_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.130e-15
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   25 VNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            V++D L+ F+FP ++QHP STGRL+ F ++GPLD  + LR+G  G  +++  E++TMC   EREDIL V
Sbjct:  236 VHLDALMSFLFPPNIQHPNSTGRLFVFSLYGPLDAKSRLRSGEKGLHVVTDIELNTMCASIEREDILSV 304          
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Match: W4FPA7_9STRA (NDK domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPA7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.170e-15
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   25 VNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAGRGGKRILSTWEIDTMCLQFEREDILQV 231
            V++D L+ F+FP ++QHP STGRL+ F ++GPLD  + LR+G  G  +++  E++TMC+  EREDIL V
Sbjct:  240 VHLDALMDFLFPPNVQHPNSTGRLFVFSLYGPLDAKSRLRSGEKGMHVVTDIELNTMCVSIEREDILSV 308          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141508.2883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FT36_ECTSI2.680e-3070.67Aspartyl protease family A01A, putative n=1 Tax=Ec... [more]
A0A7S4A522_9STRA1.830e-2157.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2B712_9STRA3.840e-2156.72Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3Y154_HETAK8.330e-1954.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0WC23_9STRA6.660e-1748.65NDK domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A6A5AZ06_9STRA1.340e-1649.30Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4FQS8_9STRA8.640e-1649.28NDK domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A835ZGK5_9STRA1.020e-1544.71Putative aspartyl protease family A01A n=1 Tax=Tri... [more]
A0A024T968_9STRA1.130e-1549.28NDK domain-containing protein n=1 Tax=Aphanomyces ... [more]
W4FPA7_9STRA1.170e-1549.28NDK domain-containing protein n=3 Tax=Aphanomyces ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141508contigH-elongata_contig141508:575..835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.2e-24
Seed eggNOG ortholog2880.D7FT36
EggNOG OGs2CN2N@1,2QTJA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.901248-CDS-H-elongata_contig141508:574..8351622929841.901248-CDS-H-elongata_contig141508:574..835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141508 575..835 -
1691679179.3893137-CDS-H-elongata_contig141508:574..8351691679179.3893137-CDS-H-elongata_contig141508:574..835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141508 575..835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141508.2883.1prot_H-elongata_contig141508.2883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141508 575..835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141508.2883.1

>prot_H-elongata_contig141508.2883.1 ID=prot_H-elongata_contig141508.2883.1|Name=mRNA_H-elongata_contig141508.2883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
KCGDSSSRVNVDELLRFIFPGSLQHPLSTGRLYSFVMFGPLDESANLRAG
RGGKRILSTWEIDTMCLQFEREDILQVGYDVEPTKR*
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mRNA from alignment at H-elongata_contig141508:575..835-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141508.2883.1 ID=mRNA_H-elongata_contig141508.2883.1|Name=mRNA_H-elongata_contig141508.2883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig141508:575..835- (Himanthalia elongata Himel1 dioecious)
AAATGTGGGGATAGTAGTAGTAGAGTGAACGTGGACGAGCTGCTGAGGTT TATCTTTCCAGGGTCGCTGCAGCACCCTCTCTCAACTGGGAGGCTCTATT CTTTTGTCATGTTTGGCCCCCTGGACGAGAGCGCAAATCTTCGAGCAGGC CGTGGTGGCAAGCGGATCCTTAGCACTTGGGAAATCGACACAATGTGTCT GCAGTTCGAGCGCGAGGATATCCTGCAGGTGGGCTATGATGTCGAGCCCA CAAAGCGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig141508:575..835-

>mRNA_H-elongata_contig141508.2883.1 ID=mRNA_H-elongata_contig141508.2883.1|Name=mRNA_H-elongata_contig141508.2883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig141508:575..835- (Himanthalia elongata Himel1 dioecious)
AAATGTGGGGATAGTAGTAGTAGAGTGAACGTGGACGAGCTGCTGAGGTT
TATCTTTCCAGGGTCGCTGCAGCACCCTCTCTCAACTGGGAGGCTCTATT
CTTTTGTCATGTTTGGCCCCCTGGACGAGAGCGCAAATCTTCGAGCAGGC
CGTGGTGGCAAGCGGATCCTTAGCACTTGGGAAATCGACACAATGTGTCT
GCAGTTCGAGCGCGAGGATATCCTGCAGGTGGGCTATGATGTCGAGCCCA
CAAAGCGTTGAAAATGTGGGGATAGTAGTAGTAGAGTGAACGTGGACGAG
CTGCTGAGGTTTATCTTTCCAGGGTCGCTGCAGCACCCTCTCTCAACTGG
GAGGCTCTATTCTTTTGTCATGTTTGGCCCCCTGGACGAGAGCGCAAATC
TTCGAGCAGGCCGTGGTGGCAAGCGGATCCTTAGCACTTGGGAAATCGAC
ACAATGTGTCTGCAGTTCGAGCGCGAGGATATCCTGCAGGTGGGCTATGA
TGTCGAGCCCACAAAGCGTTGA
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