mRNA_H-elongata_contig1415.2882.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI) HSP 1 Score: 313 bits (801), Expect = 7.100e-100 Identity = 154/260 (59.23%), Postives = 194/260 (74.62%), Query Frame = 1
Query: 1 YIHHLVLTAYTGSDDCGRSCEEWS-DNSYYTTSSNSSSTISYVTSEDGSEIPSFCVFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
Y+HHL LTA+TG+ DCG+ C +W N +S S S + + IP FC +FA+IF WAPG AD QLP ++GFRFG+ S YTSL ++THYNN DGD G VDSSGVR+YYT+++R +DMGV++LGDP+VDL+G +PEGKSSV F+CPG+CTE F+ E+VT+Y+H LHMHENGQR+ TRQYR + G+E LV E EYYSFLQ+GG+V N S +I+KGDRFET C+YDTSLSSV S +V FG GSE EM
Sbjct: 260 YVHHLTLTAFTGTHDCGQDCIDWVLANLPDDDEPSSQSAYSDPYTFNNMTIPDFCYQQFANIFAWAPGSADVQLPGNVGFRFGNDS--YTSLRVETHYNNPDGDAGEVDSSGVRVYYTEDIREMDMGVITLGDPSVDLIGTKLPEGKSSVEFDCPGACTETYFEAESVTVYSHFLHMHENGQRMETRQYRNDSDGNEQLVDATEVEYYSFLQAGGHVTAHNGSDIIQKGDRFETTCYYDTSLSSVDSTNVTFGEGSEQEM 517
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI) HSP 1 Score: 308 bits (788), Expect = 5.940e-98 Identity = 156/292 (53.42%), Postives = 198/292 (67.81%), Query Frame = 1
Query: 1 YIHHLVLTAYTGSDDCGRSCEEWSDNSY-----------------------------YTTSSNSSSTISYVTSEDGSEI--PSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
Y+HHLVLT + G+ DCG +C EW D + + S+ SS++S+ + I P+FC E A IFLWAPG ++ +LPDD+GF FG+ SGG+ SL +QTHYNN DG G DSSGVR+YYT+ELRPI MG++ LGDP V L P+PEGKSS F CPGSC+E NF+EE VT++ H+LHMHENGQR++TRQYR + G+EVL+H AE EYYS LQ+GG++V N+++ I+KGDRF TEC YDTSLSSVSS +V FGLGSE EM
Sbjct: 230 YVHHLVLTGFYGASDCGHACNEWLDEIFGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPSDDSSSVSFTEYFENLNITVPTFCSNYGEQADIFLWAPGTSNLELPDDVGFLFGNESGGFNSLNIQTHYNNPDGVSGKNDSSGVRVYYTEELRPIQMGLMKLGDPFVALYDQPLPEGKSSFSFGCPGSCSETNFEEEEVTVFIHMLHMHENGQRMVTRQYRNDSDGNEVLIHTAEVEYYSVLQAGGHLVTNNETITIRKGDRFTTECMYDTSLSSVSSANVTFGLGSEQEM 521
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7G217_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G217_ECTSI) HSP 1 Score: 298 bits (764), Expect = 3.380e-96 Identity = 155/294 (52.72%), Postives = 190/294 (64.63%), Query Frame = 1
Query: 1 YIHHLVLTAYTGSDDCGRSCEEWSDNSY-------------------------------YTTSSNSSSTISYVTSEDGSEI--PSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
Y+HHLVLT + G+ DCG +C EW D + + S+ SS++S+ + I PSFC +FA IFLWAPG ++ +LPDD+GF FG+ SGG+ SL +QTHYNN DG G DSSGVR+YYT+ELRPI MGVL LGDP V L P+PEGKSS F CPG+C+E NF+EE VTI+ HVLHMHENGQR++T QYR + G+E L+H E YYSFLQ+G +VV VN S IKKGD F T+C YDTSLSSV +V FG GSE EM
Sbjct: 74 YVHHLVLTGFYGASDCGNACNEWLDEMFGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYPSDDSSSVSFTEYFENLNITVPSFCSNYGDFADIFLWAPGTSNLELPDDVGFLFGNESGGFNSLNIQTHYNNPDGVSGKNDSSGVRVYYTEELRPIQMGVLKLGDPFVALYDQPLPEGKSSFSFGCPGTCSETNFEEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIHTTEVGYYSFLQAGAHVVTVNGSATIKKGDSFTTQCMYDTSLSSVDPANVTFGEGSEQEM 367
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI) HSP 1 Score: 298 bits (762), Expect = 2.970e-94 Identity = 149/262 (56.87%), Postives = 189/262 (72.14%), Query Frame = 1
Query: 1 YIHHLVLTAYTGSDDCGRSCEEWSDNSYYTT-SSNSSSTISYVTSEDGSEIPSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
++HHLVLT + G DCG +C EW D + SS SSS ++ +T +P FC + + A IF+WAPG+ LPDD+GF FG+ SGG SL +Q HYNN DG G DSSGVR+YYT+ELRP++MG++ LGDP L P+P+GKS F CPG+CTE F+EE VT+++H+LHMHENGQR+ TRQYR + G+EVL+H AE EYYSFLQ+G +VV VNDS IKKGD F TEC+YDTS SSV S +V +GLGSE+EM
Sbjct: 253 FVHHLVLTGFYGPPDCGNACFEWMDEMFGDGGSSYSSSDMTNIT------LPWFCNDLEDAADIFIWAPGMQSLDLPDDVGFLFGNESGGLNSLRVQVHYNNADGVSGKNDSSGVRVYYTEELRPMNMGLVKLGDPQGALHPQPLPDGKSVYSFGCPGTCTETYFEEEEVTVFSHLLHMHENGQRISTRQYRNDGDGNEVLIHTAEVEYYSFLQAGVHVVTVNDSTTIKKGDVFTTECYYDTSYSSVGSPNVTWGLGSENEM 508
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI) HSP 1 Score: 296 bits (758), Expect = 2.750e-93 Identity = 154/289 (53.29%), Postives = 192/289 (66.44%), Query Frame = 1
Query: 1 YIHHLVLTAYTGSDDCGRSCEEWSDNSYYTTS-SNSSSTI--------------SYVTSEDGSEI-------------PSFC--VFEFASIFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
Y+HHL+LT + G+ DCG++C EW D + + S+SSST+ S S+D S + PSFC E A IF+WAPG ++ +LP D+GF G+ SGG+ SL +QTHYNN DG G DSSGVR+YYT+ELRPI MGVL LGDP + L P+P+GKSS F CPG+C+E NF+EE VTI+ HVLHMHENGQR++T QYR + G+E L+H E YYS LQ+G +VV VN S IKKGD F T+C YDTSLSSV S +V FGLGSE EM
Sbjct: 251 YVHHLILTGFYGASDCGKACSEWLDEMFASEDGSDSSSTVEGGXXXXXXXXXSGSSYPSDDSSSVSFTEYFENLNITVPSFCSNYGEQADIFVWAPGTSNLELPGDVGFLLGNESGGFNSLNIQTHYNNPDGVSGKNDSSGVRVYYTEELRPIQMGVLKLGDPFIALSDQPLPDGKSSFSFGCPGTCSETNFEEEEVTIFNHVLHMHENGQRMVTHQYRDDGEGNEELIHTTEVWYYSSLQAGAHVVTVNGSATIKKGDSFTTQCMYDTSLSSVGSANVTFGLGSEQEM 539
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A6H5K5A3_9PHAE (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A3_9PHAE) HSP 1 Score: 221 bits (563), Expect = 1.750e-67 Identity = 114/207 (55.07%), Postives = 140/207 (67.63%), Query Frame = 1
Query: 229 IGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIK------------------------KGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
+GFRFG+ S YTSL ++TH NN DGD G VDSS VR+YYT+ +R +DMGV++LGDPNVDL G +PEGKSSV F+CPG CTE + E+VT+Y+H LHMH NGQR+ TRQYR + G+E LV E EYYSFLQ+GG+V N S +I+ KGD FET C+YDTSLSSV S +V FG GSE+ M
Sbjct: 19 VGFRFGNDS--YTSLRVETHNNNPDGDAGEVDSSSVRVYYTEGIREMDMGVITLGDPNVDLTGTKLPEGKSSVEFDCPGVCTETYLEAESVTVYSHFLHMHGNGQRMETRQYRSDSDGNEQLVDATEVEYYSFLQAGGHVTAHNGSDIIQYIHYLLPPNAFVLPCLAFVSVFLQKGDSFETTCYYDTSLSSVDSTNVTFGEGSEEGM 223
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: D7FP36_ECTSI (Cu2_monoox_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP36_ECTSI) HSP 1 Score: 184 bits (466), Expect = 2.530e-54 Identity = 86/135 (63.70%), Postives = 107/135 (79.26%), Query Frame = 1
Query: 373 MGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
MGV+ LGDP V L +P+GKS+ F CP +CTE +F+EE VT+++H+LHMHENGQR++TRQYR + G+EVL+H A+ EYYSFLQ+G +VV VNDS IKKGD F TECFYDTS SSV S +V FGLGSE+EM
Sbjct: 1 MGVIKLGDPYVALESQTLPDGKSTFSFGCPSTCTETHFEEEEVTVFSHLLHMHENGQRMLTRQYRTDSDGNEVLLHTADVEYYSFLQAGAHVVSVNDSTTIKKGDVFTTECFYDTSYSSVDSSNVTFGLGSENEM 135
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A6U4MP62_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4MP62_HEMAN) HSP 1 Score: 140 bits (353), Expect = 8.870e-35 Identity = 79/205 (38.54%), Postives = 115/205 (56.10%), Query Frame = 1
Query: 181 IFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPE----GKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDS-MLIKKGDRFETECFYDTSLSSVSSDS-VEFGLGSEDEM 777
++LW PGI P + G R +GG+ ++ +Q HY+N G+VDSSG I+YT++LR D G+L LGDPN+ L P+ E G S + P ++ + VT++ +HMH+ G+R++TRQYR + LV +YY F QSGG+ + + IKKGD F+ ECFY S+D + FGL S+DEM
Sbjct: 278 VWLWGPGIPGYVFPPEAGVRI--MTGGFQAIHIQIHYDNPTLISGLVDSSGFSIFYTNQLRQFDAGILQLGDPNILLFKQPIKEKDGSGYSHLTLTNPARDCTGKWEVDEVTVFERFMHMHKAGERMVTRQYRDGE-----LVRTDFCDYYDFFQSGGFSPRSTAAGFKIKKGDTFDVECFY------YSNDKMIRFGLASDDEM 469
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A1Z5JSD8_FISSO (DOMON domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSD8_FISSO) HSP 1 Score: 134 bits (337), Expect = 2.110e-32 Identity = 75/199 (37.69%), Postives = 110/199 (55.28%), Query Frame = 1
Query: 181 IFLWAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
I+ WA G LP D+G G G Y S L+ HY+N EG++DSSGVR YY++++RP+++G+L LGDP + L G PV +G + +F+CP +CTE K+E VT+ LHMH G + R + ++H +Y+ F Q G +VK +KKGD + T C YD + + FG S++EM
Sbjct: 300 IYGWAKGEDPAALPLDVGLYIGP--GTYQSFRLEIHYDNPQLKEGVLDSSGVRFYYSEKMRPVELGLLRLGDPIISLEGQPVGDGLTQHIFDCPSTCTETMLKQE-VTVLREYLHMHYAGATMQNELIRDGE-----VIHTGTVDYFRFDQQGNQLVK-QMPYTVKKGDAYRTICNYDDKGRNAT-----FGFSSQEEM 484
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Match: A0A1Y2BGD8_9FUNG (Peptidylglycine monooxygenase n=2 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BGD8_9FUNG) HSP 1 Score: 119 bits (299), Expect = 2.160e-27 Identity = 78/196 (39.80%), Postives = 105/196 (53.57%), Query Frame = 1
Query: 190 WAPGIADEQLPDDIGFRFGSTSGGYTSLELQTHYNNVDGDEGMVDSSGVRIYYTDELRPIDMGVLSLGDPNVDLLGVPVPEGKSSVLFECPGSCTENNFKEENVTIYAHVLHMHENGQRVITRQYRKNDSGSEVLVHKAEAEYYSFLQSGGYVVKVNDSMLIKKGDRFETECFYDTSLSSVSSDSVEFGLGSEDEM 777
WAPGI LP ++GF FG+ + LQ HYNN + ++DSSG+R++YT +LRP DMGVL LGD N ++ G P S+ CP +CT+ N+TI + HMH GQ TRQ R G E++ A YY F GG + +I GD T+C Y +L+ V S+ FG +EDEM
Sbjct: 214 WAPGIGLNVLPKEVGFPFGTGTNALRYFSLQIHYNNPNALSNIIDSSGMRLFYTTQLRPNDMGVLILGDTNFNISGND-PSYYSTQWNVCPTACTKQF--PTNLTIINNFFHMHMLGQNSTTRQIR---DGKEIVPLGA-VHYYDFNFQGG-LAPFQKGAVISPGDTLLTKCAYIPTLN-VRSNYTVFGESTEDEM 400 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1415.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1415.2882.1 >prot_H-elongata_contig1415.2882.1 ID=prot_H-elongata_contig1415.2882.1|Name=mRNA_H-elongata_contig1415.2882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp YIHHLVLTAYTGSDDCGRSCEEWSDNSYYTTSSNSSSTISYVTSEDGSEIback to top mRNA from alignment at H-elongata_contig1415:15308..16622- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1415.2882.1 ID=mRNA_H-elongata_contig1415.2882.1|Name=mRNA_H-elongata_contig1415.2882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1315bp|location=Sequence derived from alignment at H-elongata_contig1415:15308..16622- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1415:15308..16622- >mRNA_H-elongata_contig1415.2882.1 ID=mRNA_H-elongata_contig1415.2882.1|Name=mRNA_H-elongata_contig1415.2882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig1415:15308..16622- (Himanthalia elongata Himel1 dioecious)back to top |