mRNA_H-elongata_contig141440.2877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141440.2877.1
Unique NamemRNA_H-elongata_contig141440.2877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141440.2877.1 vs. uniprot
Match: D7FHU8_ECTSI (Cyclic nucleotide-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU8_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.190e-57
Identity = 93/131 (70.99%), Postives = 108/131 (82.44%), Query Frame = 1 
Query:    1 PETVRSSGWKVAARYMLVQHREVAHELFGLGHINEREFEGLVSQNNMARVRLDYHPQTDQIPDRWAVTLLKHVPFLRFLTDEEREAVIKDEKACQEEFYGSNVVLMQEKTSFAKGKRRAGWFNVVRGSVRQ 393
            PE  RS   +VAA+YMLVQH EV HELF  GHIN+RE EGL+++NN ARV+L+YHP  DQIPDR+  TLLK+VPFLRFLTDEE+  +I +EKACQEEFYGSNVVLM  K SFA+G RR GWFNVVRG+VRQ
Sbjct:   60 PELARSLKTRVAAKYMLVQHPEVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRF--TLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFNVVRGAVRQ 188
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BLAST of mRNA_H-elongata_contig141440.2877.1 vs. uniprot
Match: A0A6H5L6F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F4_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.540e-53
Identity = 93/131 (70.99%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:    1 PETVRSSGWKVAARYMLVQHREVAHELFGLGHINEREFEGLVSQNNMARVRLDYHPQTDQIPDRWAVTLLKHVPFLRFLTDEEREAVIKDEKACQEEFYGSNVVLMQEKTSFAKGKRRAGWFNVVRGSVRQ 393
            PE  RS   +VAA+YMLVQHREV HELF  GHIN+RE EGL+++NN ARV+L+YHP  DQIPDR+  TLLK+VPFLRFLTDEE+  +I +EKACQEEFYGSNVVLM  K SFA+G RR GWF+VVRG+VRQ
Sbjct:  704 PELARSLKTRVAAKYMLVQHREVVHELFHHGHINDRESEGLIAENNAARVKLEYHPAADQIPDRF--TLLKNVPFLRFLTDEEKAEIINNEKACQEEFYGSNVVLMNAKMSFARGARRQGWFSVVRGAVRQ 832
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BLAST of mRNA_H-elongata_contig141440.2877.1 vs. uniprot
Match: A0A836CH43_9STRA (Sodium/hydrogen exchanger family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH43_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.790e-31
Identity = 65/120 (54.17%), Postives = 86/120 (71.67%), Query Frame = 1 
Query:    1 PETVRSSGWKVAARYMLVQHREVAHELFGLGHINEREFEGLVSQNNMARVRLDYHPQTDQIPDRWAVTLLKHVPFLRFLTDEEREAVIKDEKACQEEFYGSNVVLMQEKTSFAKGKRRAG 360
            PE  RS   +VAARY+LVQHR +  E +  GHIN+RE+  L+  NN++RV+LDYHP TD IPDR    LLK VPFLRFLTD +RE VI++  A  EEF GS++ LM+E+++   G +R+G
Sbjct: 1013 PELARSLKTQVAARYILVQHRGMVEESYRHGHINDREYARLLHSNNVSRVKLDYHPHTDHIPDR--SQLLKGVPFLRFLTDADRETVIRNSAAVVEEFRGSHITLMRERSADVTGHKRSG 1130
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BLAST of mRNA_H-elongata_contig141440.2877.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 7.950e-21
Identity = 52/123 (42.28%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:   28 KVAARYMLVQHREVAHELFGLGHINEREFEGLVSQNNMARVRLDYHPQTDQIPDRWAVTLLKHVPFLRFLTDEEREAVIKDEKACQEEFYGSNVVLMQEKTSF---AKGKRRAGWFNVVRGSV 387
            +VAAR++L +HRE  HE+F  G +NE+E E  +  N   +++LD HP  + +P R AV L K VPFL+ L++++   V+ D++ CQEE +GSNVVL+++          K   GW+ +VRGSV
Sbjct:  974 EVAARFLLAKHREFVHEMFLDGLLNEKEAETTLHVNTEFKIKLDDHPYAEHLPPR-AVMLAK-VPFLKSLSEDQVVQVVNDDRFCQEELHGSNVVLLRQSERVKHSGHNKGTTGWYYIVRGSV 1094
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141440.2877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHU8_ECTSI1.190e-5770.99Cyclic nucleotide-binding protein n=1 Tax=Ectocarp... [more]
A0A6H5L6F4_9PHAE1.540e-5370.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CH43_9STRA1.790e-3154.17Sodium/hydrogen exchanger family-domain-containing... [more]
D7G372_ECTSI7.950e-2142.28Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141440contigH-elongata_contig141440:144..1390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D7G372
EggNOG free text desc.potassium:proton antiporter activity
EggNOG OGsCOG0025@1,KOG1965@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclic nucleotide-binding-like
Ec32 orthologEc-00_000510.1
Exons3
Model size393
Cds size393
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141440.2877.1prot_H-elongata_contig141440.2877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141440 144..1390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.3306577-CDS-H-elongata_contig141440:143..3401622929841.3306577-CDS-H-elongata_contig141440:143..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141440 144..340 +
1691679179.2359629-CDS-H-elongata_contig141440:143..3401691679179.2359629-CDS-H-elongata_contig141440:143..340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141440 144..340 +
1622929841.3494332-CDS-H-elongata_contig141440:651..7391622929841.3494332-CDS-H-elongata_contig141440:651..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141440 652..739 +
1691679179.2446704-CDS-H-elongata_contig141440:651..7391691679179.2446704-CDS-H-elongata_contig141440:651..739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141440 652..739 +
1622929841.361985-CDS-H-elongata_contig141440:1282..13901622929841.361985-CDS-H-elongata_contig141440:1282..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141440 1283..1390 +
1691679179.2522593-CDS-H-elongata_contig141440:1282..13901691679179.2522593-CDS-H-elongata_contig141440:1282..1390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141440 1283..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141440.2877.1

>prot_H-elongata_contig141440.2877.1 ID=prot_H-elongata_contig141440.2877.1|Name=mRNA_H-elongata_contig141440.2877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
PETVRSSGWKVAARYMLVQHREVAHELFGLGHINEREFEGLVSQNNMARV
RLDYHPQTDQIPDRWAVTLLKHVPFLRFLTDEEREAVIKDEKACQEEFYG
SNVVLMQEKTSFAKGKRRAGWFNVVRGSVRQ
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mRNA from alignment at H-elongata_contig141440:144..1390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141440.2877.1 ID=mRNA_H-elongata_contig141440.2877.1|Name=mRNA_H-elongata_contig141440.2877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1247bp|location=Sequence derived from alignment at H-elongata_contig141440:144..1390+ (Himanthalia elongata Himel1 dioecious)
CCGGAAACCGTCCGTTCTTCTGGCTGGAAGGTCGCGGCAAGGTATATGCT
GGTCCAGCACCGGGAGGTGGCCCACGAGCTTTTCGGGCTCGGACACATCA
ACGAGCGCGAGTTCGAGGGACTCGTTTCTCAAAACAACATGGCTAGGGTT
CGCCTGGACTACCATCCTCAGACCGATCAGATCCCGGACAGGTGGGCGTC
AGAAGGCTTCGAGAGTTGGTTGTTGCTTGTGCTCGTAAAAGGAGGACTCT
TTTCTGCGGTAAGTGCTGTGTACGATGGCAGGCGCTGGCAATGACTGGTT
CCTGCTGCCACCCCCTGGCACGAAGCGTTGCGCTCGTTTTTAGTGAAATA
TATATAGCACCACGTACCTGACGCATTCACATTCATTCATCGGTACAACA
TTTTCCTCTTGTTTTACGACCAAAAATATCGCTTGGCTCTTTTTCTCTTT
CTCTAAAAATATATATATTTATATATATTTTATGTTTATGTGTCTTATGT
GATTGCAGGGTGACCCTCCTGAAGCACGTGCCGTTCCTGAGGTTCTTGAC
GGACGAGGAGAGAGAGGCAGTCATCAAGGACGAGAAAGCCTGCCAGGTAG
CATAGTAACAATGGGTCGCTACAGCCCTTGATCTTGCTGTACCGTAAGAA
AATTTAAAGTTCCACAACTAGATAAGATAGAGAGAAATATATATATATGT
GGTACATGTGAAAAAGAGAGATTGGGACAGCTAAGGGTGGGTTTTAACGG
GATTTCAAAAAAATAATTTCAGCCGATTTAAATTTCAATCGGGCTCTGAT
TGATCGAAAGCTAAGCAACGCCTAGACTTCGACTAAAAGGGAGAACACTT
TGATATTCAGAGATATCACATGTTAAGGCCTTGATAAGGGAAAACGAAAC
CGAAATCCAGCTTCTCGCATCACCGGTGCAATCACTGCAGCAGCAGCAGC
AGAAGGCGCAGGGGAGGGAAGGAAGCAACCCGGATGCCATCTCAAGTACA
CACCGCGATAAGATTGAGTGCGGCCACCATACACACAGACACACACACAC
ACACACACATACAACACACACGGTTGCTGACACCGCCACGATCTTCCTTC
TGTCGTGTCCCCCATTTCCCGAATTTGTGCCCGCCTCAGGAGGAGTTCTA
CGGATCTAACGTGGTGTTGATGCAAGAGAAGACCAGCTTCGCGAAGGGAA
AACGCCGGGCGGGGTGGTTCAACGTTGTGAGGGGCTCCGTGCGTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig141440:144..1390+

>mRNA_H-elongata_contig141440.2877.1 ID=mRNA_H-elongata_contig141440.2877.1|Name=mRNA_H-elongata_contig141440.2877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig141440:144..1390+ (Himanthalia elongata Himel1 dioecious)
CCGGAAACCGTCCGTTCTTCTGGCTGGAAGGTCGCGGCAAGGTATATGCT
GGTCCAGCACCGGGAGGTGGCCCACGAGCTTTTCGGGCTCGGACACATCA
ACGAGCGCGAGTTCGAGGGACTCGTTTCTCAAAACAACATGGCTAGGGTT
CGCCTGGACTACCATCCTCAGACCGATCAGATCCCGGACAGGTGGGCCCG
GAAACCGTCCGTTCTTCTGGCTGGAAGGTCGCGGCAAGGTATATGCTGGT
CCAGCACCGGGAGGTGGCCCACGAGCTTTTCGGGCTCGGACACATCAACG
AGCGCGAGTTCGAGGGACTCGTTTCTCAAAACAACATGGCTAGGGTTCGC
CTGGACTACCATCCTCAGACCGATCAGATCCCGGACAGGTGGGCGGTGAC
CCTCCTGAAGCACGTGCCGTTCCTGAGGTTCTTGACGGACGAGGAGAGAG
AGGCAGTCATCAAGGACGAGAAAGCCTGCCAGGGTGACCCTCCTGAAGCA
CGTGCCGTTCCTGAGGTTCTTGACGGACGAGGAGAGAGAGGCAGTCATCA
AGGACGAGAAAGCCTGCCAGGAGGAGTTCTACGGATCTAACGTGGTGTTG
ATGCAAGAGAAGACCAGCTTCGCGAAGGGAAAACGCCGGGCGGGGTGGTT
CAACGTTGTGAGGGGCTCCGTGCGTCAGGAGGAGTTCTACGGATCTAACG
TGGTGTTGATGCAAGAGAAGACCAGCTTCGCGAAGGGAAAACGCCGGGCG
GGGTGGTTCAACGTTGTGAGGGGCTCCGTGCGTCAG
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