mRNA_H-elongata_contig141436.2876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141436.2876.1
Unique NamemRNA_H-elongata_contig141436.2876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141436.2876.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 7.210e-6
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:   22 WVNDSGATEHMTQDPAGLEGYTPAPAGDRVESVGGTLLPVAGYGHLRLLVDQGNGNFTHSTRQLTLKHIAHVPN-LGQHNLLSTKRLTQ 285
            ++ D+G++ H+  DP+ L  Y  A     +E   G L+PVAGYG+LR+    G         ++ LK +AH P+ +G  NL+  KRLT+
Sbjct:  751 FILDTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVTTQAG--------LKIELKDVAHCPSAIG--NLIGGKRLTK 829
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BLAST of mRNA_H-elongata_contig141436.2876.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 50.4 bits (119), Expect = 1.040e-5
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:   16 EFWVNDSGATEHMTQDPAGLEGYTPAPAGDRVESVGGTLLPVAGYGHLRLLVDQGNGNFTHSTRQLTLKHIAHVPNLGQHNLLSTKRLTQ 285
            + W+ DSGAT+HMT +P+ +   TP      V +  G   P+ G G + L            T+ +TL  +  VP+L  HNLLS K++T+
Sbjct:   21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITK 96
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BLAST of mRNA_H-elongata_contig141436.2876.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH)

HSP 1 Score: 50.4 bits (119), Expect = 4.640e-5
Identity = 31/90 (34.44%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:   16 EFWVNDSGATEHMTQDPAGLEGYTPAPAGDRVESVGGTLLPVAGYGHLRLLVDQGNGNFTHSTRQLTLKHIAHVPNLGQHNLLSTKRLTQ 285
            + W+ DSGAT+HMT +P+ +   TP      V +  G   P+ G G + L            T+ +TL  +  VP+L  HNLLS K++T+
Sbjct:  236 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITK 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141436.2876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A177TP70_9BASI7.210e-635.96Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A2P6P2V5_ROSCH1.040e-534.44Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
A0A2P6S473_ROSCH4.640e-534.44Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141436contigH-elongata_contig141436:974..1258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.2744849-CDS-H-elongata_contig141436:973..12581622929841.2744849-CDS-H-elongata_contig141436:973..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141436 974..1258 -
1691679179.227867-CDS-H-elongata_contig141436:973..12581691679179.227867-CDS-H-elongata_contig141436:973..1258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141436 974..1258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141436.2876.1prot_H-elongata_contig141436.2876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141436 974..1258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141436.2876.1

>prot_H-elongata_contig141436.2876.1 ID=prot_H-elongata_contig141436.2876.1|Name=mRNA_H-elongata_contig141436.2876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
ERRESEFWVNDSGATEHMTQDPAGLEGYTPAPAGDRVESVGGTLLPVAGY
GHLRLLVDQGNGNFTHSTRQLTLKHIAHVPNLGQHNLLSTKRLTQ
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mRNA from alignment at H-elongata_contig141436:974..1258-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141436.2876.1 ID=mRNA_H-elongata_contig141436.2876.1|Name=mRNA_H-elongata_contig141436.2876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=285bp|location=Sequence derived from alignment at H-elongata_contig141436:974..1258- (Himanthalia elongata Himel1 dioecious)
GAACGGCGTGAGAGCGAATTCTGGGTGAACGATAGCGGTGCGACAGAGCA
CATGACACAGGACCCGGCGGGTCTAGAGGGTTACACGCCGGCACCCGCGG
GAGATCGAGTGGAGAGCGTCGGCGGTACCCTCCTTCCGGTGGCGGGATAT
GGACATCTCCGCCTCCTGGTGGACCAAGGCAATGGCAACTTCACTCACTC
GACGCGCCAGCTCACGCTAAAGCACATCGCACATGTGCCGAATCTTGGAC
AGCATAATCTGCTCTCTACGAAACGTCTTACGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig141436:974..1258-

>mRNA_H-elongata_contig141436.2876.1 ID=mRNA_H-elongata_contig141436.2876.1|Name=mRNA_H-elongata_contig141436.2876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig141436:974..1258- (Himanthalia elongata Himel1 dioecious)
GAACGGCGTGAGAGCGAATTCTGGGTGAACGATAGCGGTGCGACAGAGCA
CATGACACAGGACCCGGCGGGTCTAGAGGGTTACACGCCGGCACCCGCGG
GAGATCGAGTGGAGAGCGTCGGCGGTACCCTCCTTCCGGTGGCGGGATAT
GGACATCTCCGCCTCCTGGTGGACCAAGGCAATGGCAACTTCACTCACTC
GACGCGCCAGCTCACGCTAAAGCACATCGCACATGTGCCGAATCTTGGAC
AGCATAATCTGCTCTCTACGAAACGTCTTACGCAGGAACGGCGTGAGAGC
GAATTCTGGGTGAACGATAGCGGTGCGACAGAGCACATGACACAGGACCC
GGCGGGTCTAGAGGGTTACACGCCGGCACCCGCGGGAGATCGAGTGGAGA
GCGTCGGCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCGCCTC
CTGGTGGACCAAGGCAATGGCAACTTCACTCACTCGACGCGCCAGCTCAC
GCTAAAGCACATCGCACATGTGCCGAATCTTGGACAGCATAATCTGCTCT
CTACGAAACGTCTTACGCAG
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