mRNA_H-elongata_contig141407.2873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141407.2873.1
Unique NamemRNA_H-elongata_contig141407.2873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141407.2873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141407contigH-elongata_contig141407:1296..1539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.8647091-CDS-H-elongata_contig141407:1295..14471622929840.8647091-CDS-H-elongata_contig141407:1295..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141407 1296..1447 +
1691679179.0821137-CDS-H-elongata_contig141407:1295..14471691679179.0821137-CDS-H-elongata_contig141407:1295..1447Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141407 1296..1447 +
1622929840.880719-CDS-H-elongata_contig141407:1460..15391622929840.880719-CDS-H-elongata_contig141407:1460..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141407 1461..1539 +
1691679179.0903456-CDS-H-elongata_contig141407:1460..15391691679179.0903456-CDS-H-elongata_contig141407:1460..1539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141407 1461..1539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141407.2873.1prot_H-elongata_contig141407.2873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141407 1296..1539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141407.2873.1

>prot_H-elongata_contig141407.2873.1 ID=prot_H-elongata_contig141407.2873.1|Name=mRNA_H-elongata_contig141407.2873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
TRTSKYRWSFSPTVYQYIHTSRIDYRIDPNLLVPLAFLPHCLSIHTHLTY
SYRIKPMPCSSFLFESFLSLPVSYLSC
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mRNA from alignment at H-elongata_contig141407:1296..1539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141407.2873.1 ID=mRNA_H-elongata_contig141407.2873.1|Name=mRNA_H-elongata_contig141407.2873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=244bp|location=Sequence derived from alignment at H-elongata_contig141407:1296..1539+ (Himanthalia elongata Himel1 dioecious)
ACCCGAACCTCTAAGTACCGTTGGTCTTTCTCCCCTACTGTCTATCAATA
CATACACACCTCACGTATAGACTACCGTATAGACCCGAACCTCTTAGTAC
CGTTGGCCTTTCTCCCCCACTGCCTATCAATACATACACACCTTACGTAT
AGGCTACCGTATAAGCTACCGTATAAAGCCAATGCCTTGCAGCTCCTTTC
TGTTTGAGTCTTTTCTCTCACTTCCCGTCTCGTATTTGTCTTGT
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Coding sequence (CDS) from alignment at H-elongata_contig141407:1296..1539+

>mRNA_H-elongata_contig141407.2873.1 ID=mRNA_H-elongata_contig141407.2873.1|Name=mRNA_H-elongata_contig141407.2873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig141407:1296..1539+ (Himanthalia elongata Himel1 dioecious)
ACCCGAACCTCTAAGTACCGTTGGTCTTTCTCCCCTACTGTCTATCAATA
CATACACACCTCACGTATAGACTACCGTATAGACCCGAACCTCTTAGTAC
CGTTGGCCTTTCTCCCCCACTGCCTATCAATACATACACACCTTACGTAT
AGACCCGAACCTCTAAGTACCGTTGGTCTTTCTCCCCTACTGTCTATCAA
TACATACACACCTCACGTATAGACTACCGTATAGACCCGAACCTCTTAGT
ACCGTTGGCCTTTCTCCCCCACTGCCTATCAATACATACACACCTTACGT
ATAGCTACCGTATAAAGCCAATGCCTTGCAGCTCCTTTCTGTTTGAGTCT
TTTCTCTCACTTCCCGTCTCGTATTTGTCTTGTCTACCGTATAAAGCCAA
TGCCTTGCAGCTCCTTTCTGTTTGAGTCTTTTCTCTCACTTCCCGTCTCG
TATTTGTCTTGT
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