mRNA_H-elongata_contig141388.2872.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 120 bits (302), Expect = 7.820e-28 Identity = 110/231 (47.62%), Postives = 140/231 (60.61%), Query Frame = 1
Query: 4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCG-RQSVALSTTARFVLCSLSAVEFVGNSASEGSLLTWLKSR-------------GGAATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
LK+SGG A+ GGA+ + A VTLN+C FDGNIA G+GGAVWV GG XXXXXXXXXXXXXXXXXXXXXXXXXXXX L+CG ++ L + + CSL+ V F N+AS ++L + GG A F++ VNIT+SVFE N+A GGA++GGTD+ + +DG + N A+AAS+ T+ GNT +N A SGGGV
Sbjct: 115 LKLSGGRAARGGAIRSSMAAVTLNSCAFDGNIATDGDGGAVWVEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLFCGGSENATLLSASDNASCSLNGVIFAFNNASSETILDYDNMAAPSTQAPLITLYGGGGAAFYHTVVNITDSVFESNYAQLSGGALFGGTDSAMAIDGVTLENNFTPGFAGALAASTATLGGNTLFMNNSAMQSGGGV 345
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 116 bits (291), Expect = 2.310e-26 Identity = 104/225 (46.22%), Postives = 138/225 (61.33%), Query Frame = 1
Query: 4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVLCSLSAVEFVGNSASEGSLLT----WLKSR----GGAATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
L++SGG+A+ GGA+ + A+VTL+ CVF+GN+A AG XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYCG CSLS F+ N+AS + + W+ + GGAA FW AEVNI++SVF N+A GGAV+GG T++ ++GC F+ N+ +GAA+AA S T+ G+T L++N AE++G GV
Sbjct: 153 LRLSGGSAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGNETTAFANDATSSCSLSEAVFIANNASRETEIQYPSYWVSTDEVDGGGAAAFWYAEVNISDSVFGSNYAQLSGGAVFGGNSTEMAINGCKFENNTTLGYGAAVAACSATLGGSTTLTNNSAEENGAGV 377
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 113 bits (282), Expect = 3.670e-25 Identity = 110/227 (48.46%), Postives = 136/227 (59.91%), Query Frame = 1
Query: 4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGR--QSVALSTTARFVLCSLSAVEFVGNSASEGSLLT-------WLKSRGGAAT-FWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
LK+SGG+A+ GGA+ + A V LN+CVFDGN A AG XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYCG S LS A CSLS F N+AS ++L W+ GG + A V+IT+S F+ N+A GGA+YGGTD I +DGC+F+ N HGAA+AASS T+ G+T L++N+A +GGGV
Sbjct: 114 LKLSGGSAASGGAIHSSMATVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCGGGVNSTLLSAGAT-AFCSLSDATFEFNNASSETILDYDAITEPWVNLYGGGGVAVYRAVVDITDSEFQGNYAQLSGGALYGGTDAAIAIDGCWFENNFTPGHGAAVAASSATLGGSTVLTNNLATQNGGGV 339
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: A0A6H5JB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB86_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.880e-20 Identity = 102/233 (43.78%), Postives = 129/233 (55.36%), Query Frame = 1
Query: 4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARF-------VLCSLSAVEFVGNSASEGSLLT-------WLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGVS 657
LK+SGG+A+ GGAV A A+V LN+CVFDGN A AG XXXXXXXXXXXXXXXXXXXXXXXXX X LYCG + + T CSLS F N+AS +++ W+ GG AA F+ V+IT S F N+A GGAVYGG+D+ + +DG F+ N+ +G +AASS + G+T L +N A +G GVS
Sbjct: 127 LKLSGGSAASGGAVYASAASVALNSCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSTTMTXXXXXXXXXXATCSLSGAVFGANNASSETIVDYDLIESPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGSDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGVS 359
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 3.620e-19 Identity = 101/231 (43.72%), Postives = 126/231 (54.55%), Query Frame = 1
Query: 4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVL------CSLSAVEFVGNSASEGSLLT-------WLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
L++SGG+A+ GGAV A A+V LNNCVFDGN A AG XXXXXXXXXXXXXXXXXXXXXXXXX X LYCG + CSLS F N+AS +++ W+ GG AA F+ V+IT S F N+A GGAVYGGTD+ + +DG F+ N+ +G +AASS + G+T L +N A +G GV
Sbjct: 127 LRLSGGSAASGGAVYASAASVALNNCVFDGNFATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGXGLYCGGAENSXXXXXXXXXXXXXXTCSLSGAVFGANNASSETIVDYDLIEAPWVTLYGGGAAAFYRGVVDITGSEFLGNYAQVSGGAVYGGTDSVLTIDGSSFEENTTPGYGGGLAASSAVLGGDTLLRNNSATSNGAGV 357
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: D7FRH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH2_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.190e-15 Identity = 96/224 (42.86%), Postives = 123/224 (54.91%), Query Frame = 1
Query: 4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYCGRQSVALSTTARFVLCSLSAVEFVGNSASEGSLL-------TWLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGG 651
LK+SGGNA+ GGA+ + A+VTL+ CVF+GN+A AG XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYC V S + CSLS F N AS G+ + TW GG AA F+ A V IT+S+FE N+A GG ++GG+ + + +DGC N+ +G +SNVA+++GGG
Sbjct: 124 LKLSGGNAASGGAIESSMASVTLDTCVFNGNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSG-GVESSDPS----CSLSDAAFTSNEASTGAEVSLSDTVETWADLYGGGAAAFYLATVEITDSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNTTPGYGXXXXXXXXXXXXXXXXTSNVADETGGG 342
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 2.080e-12 Identity = 94/227 (41.41%), Postives = 119/227 (52.42%), Query Frame = 1
Query: 4 LKMSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGGYFFNNSASESXXXXXXXXXXXXXXXXXXXXXXXXXXXXALYC--GRQSVALSTTARFVLCSLSAVEFVGNSASEGS-------LLTWLKSRGG-AATFWNAEVNITNSVFERNFAGRMGGAVYGGTDTDIIVDGCYFQYNSVNAHGAAIAASSMTVLGNTELSSNVAEDSGGGV 654
L++SGG+A+ GGA+ + A+VTL+ C+F N+A AG XXXXXXXXXXXXXXXXXXXXXXXXXXXX LYC G +S A S CSLS F N A+ G+ + TW GG AA F+ A V ITNS+FE N+A GG ++GG+ + + +DGC N NVA++SGGGV
Sbjct: 124 LRLSGGSAASGGAIESSMASVTLDTCIFSSNVATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYCSGGVESSAPS-------CSLSDATFTSNVATTGAEVSFSDTIETWADLYGGGAAAFYLAAVEITNSLFELNYAQVSGGGIFGGSGSSMSIDGCTINNNXXXXXXXXXXXXXXXXXXXXXXXXNVADESGGGV 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141388.2872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig141388.2872.1 >prot_H-elongata_contig141388.2872.1 ID=prot_H-elongata_contig141388.2872.1|Name=mRNA_H-elongata_contig141388.2872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp MSGGNASIGGAVLADTANVTLNNCVFDGNIAEAGNGGAVWVNGGNLIITGback to top mRNA from alignment at H-elongata_contig141388:566..1225- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig141388.2872.1 ID=mRNA_H-elongata_contig141388.2872.1|Name=mRNA_H-elongata_contig141388.2872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig141388:566..1225- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig141388:566..1225- >mRNA_H-elongata_contig141388.2872.1 ID=mRNA_H-elongata_contig141388.2872.1|Name=mRNA_H-elongata_contig141388.2872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1302bp|location=Sequence derived from alignment at H-elongata_contig141388:566..1225- (Himanthalia elongata Himel1 dioecious)back to top |