mRNA_H-elongata_contig14135.2871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14135.2871.1
Unique NamemRNA_H-elongata_contig14135.2871.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE)

HSP 1 Score: 625 bits (1613), Expect = 1.070e-222
Identity = 312/328 (95.12%), Postives = 319/328 (97.26%), Query Frame = 1 
Query:    1 MSFIEHLKPSWQTFFPSVSSSALSDFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            MSF +  KP WQ+F P VS+SALS FFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSV+IRLQLASPGN FLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGM MHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRA
Sbjct:    1 MSFTQESKPLWQSFIPLVSNSALSGFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVLIRLQLASPGNTFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMGMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRA 328
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM)

HSP 1 Score: 623 bits (1607), Expect = 8.760e-222
Identity = 311/328 (94.82%), Postives = 318/328 (96.95%), Query Frame = 1 
Query:    1 MSFIEHLKPSWQTFFPSVSSSALSDFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            MSF    KP WQ+F P VS+SALS FFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSV+IRLQLASPGN FLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSL+LLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGM MHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRA
Sbjct:    1 MSFTPESKPLWQSFIPLVSNSALSGFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVLIRLQLASPGNTFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLMLLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMGMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRA 328
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 598 bits (1541), Expect = 1.260e-211
Identity = 299/328 (91.16%), Postives = 311/328 (94.82%), Query Frame = 1 
Query:    1 MSFIEHLKPSWQTFFPSVSSSALSDFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            MS    +K SWQ   P V SSA+S F +RW FSTNHKDIGTLYLIFG FSGVLGTAMSV++RLQL SPGN FLGGN+QLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSL+LLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMR+PGMTM RLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATF+RKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRA
Sbjct:    1 MSSSTSVKSSWQIPSPLVFSSAVSGFCSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVIVRLQLMSPGNQFLGGNHQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLVLLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRSPGMTMERLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFARKPVFGYLGMVYAMLSIGMLGFIVWAHHMFTVGLDIDTRA 328
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 595 bits (1533), Expect = 1.680e-210
Identity = 295/312 (94.55%), Postives = 306/312 (98.08%), Query Frame = 1 
Query:   49 SVSSSALSDFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            SVS SAL+DF +RW FSTNHKDIGTLYLIFG FSGVLGTAMSV+IRLQLASPGN FLGGN+QLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVE+GAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTM RLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGI+SHIL+TF+RKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRA
Sbjct:   18 SVSRSALNDFCSRWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVESGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMDRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIISHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRA 329
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: A0A7S6UA19_9STRA (Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6UA19_9STRA)

HSP 1 Score: 574 bits (1480), Expect = 8.260e-203
Identity = 279/301 (92.69%), Postives = 296/301 (98.34%), Query Frame = 1 
Query:   82 TRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            +RW FSTNHKDIGTLYLIFGAFSGVLGTAMSV+IRL+LASPGN    GN+QLYNV++TAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSL+LLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGM+MHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNT+FFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGI+SH+++TFS+KPVFGYLGMVYAMLSIGVLGF+VWAHHMFTVG+D+DTRA
Sbjct:   13 SRWLFSTNHKDIGTLYLIFGAFSGVLGTAMSVLIRLELASPGNQLFAGNHQLYNVVITAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLLLLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMSMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTSFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIISHVVSTFSKKPVFGYLGMVYAMLSIGVLGFIVWAHHMFTVGMDIDTRA 313
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: Q2TUB0_DICDH (Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUB0_DICDH)

HSP 1 Score: 570 bits (1470), Expect = 3.040e-201
Identity = 281/301 (93.36%), Postives = 291/301 (96.68%), Query Frame = 1 
Query:   82 TRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            +RW FSTNHKDIGTLYL+FG FSGVLGT MSV+IRLQLASP N FL  N+QLYNVIVTAHAFLMIFFMVMP+LIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSL+LLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGM MHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHIL+ FS KPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRA
Sbjct:   27 SRWLFSTNHKDIGTLYLLFGGFSGVLGTGMSVLIRLQLASPSNQFLSNNHQLYNVIVTAHAFLMIFFMVMPILIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLVLLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMGMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILSRFSGKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRA 327
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: A0A8E8PDM6_9PHAE (Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PDM6_9PHAE)

HSP 1 Score: 570 bits (1470), Expect = 5.700e-201
Identity = 275/304 (90.46%), Postives = 296/304 (97.37%), Query Frame = 1 
Query:   73 DFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            ++ +RW FSTNHKDIGT+YLIFG FSGVLGTAMSV+IRLQLASP N FLGGN+QLYNVIVT HAFLMIFFMVMPVLIGGFGNWFVP+MIGAPDMAFPRMNNISFWLLPP+L+LLL+SSLVEAGAGTGWT+YPPLSGIQAHSGPSVDLAIFSLHLSG ASILGAINFITTI NMRAPGMTMHR+PLFVWS+LIT+FLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSH+++TFSRKPVFG+LGM+YAMLSIGVLGF+VWAHHMFTVGLD+DTRA
Sbjct:   18 NYLSRWLFSTNHKDIGTMYLIFGGFSGVLGTAMSVLIRLQLASPSNSFLGGNHQLYNVIVTTHAFLMIFFMVMPVLIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLPPALVLLLSSSLVEAGAGTGWTLYPPLSGIQAHSGPSVDLAIFSLHLSGTASILGAINFITTILNMRAPGMTMHRMPLFVWSILITSFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHVISTFSRKPVFGFLGMIYAMLSIGVLGFIVWAHHMFTVGLDIDTRA 321
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: O99385_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=PX clade TaxID=569578 RepID=O99385_9STRA)

HSP 1 Score: 559 bits (1440), Expect = 4.160e-199
Identity = 277/289 (95.85%), Postives = 286/289 (98.96%), Query Frame = 1 
Query:  118 GTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            GTLYLIFG FSGVLGTAMSV+IRLQLASPGN FLGGN+QLYNVIVTAHAFLMIFFMVMP+LIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVE+GAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTM RLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHIL+TF+RKPVFGYLGMVYAMLSIG+LGF+VWAHHMFTVGLD+DTRA
Sbjct:    1 GTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYNVIVTAHAFLMIFFMVMPILIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVESGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMDRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRA 289
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 565 bits (1455), Expect = 6.070e-198
Identity = 276/308 (89.61%), Postives = 295/308 (95.78%), Query Frame = 1 
Query:   61 SALSDFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            +A+  F +RW FSTNHKDIGTLYLIFG FSGVLGT MSV+IRLQLASPGN FLGGN+QLYNVIVTAHAFLMIFFMVMPVLIGGFGNW VPLMIGAPDMAFPRMNNISFWLLPPSL+LLLAS+LVE+GAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGA+S+LGAINFI TI NMR PGMTMHR+PLFVWSVL+TAFLLLL+LPVLA GITMLLTDRNFNT+FFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHIL+TFSRK VFGYLGMVYAM+SIG+LGF+VWAHHMFTVGLD+DTRA
Sbjct:   26 NAIYTFSSRWLFSTNHKDIGTLYLIFGGFSGVLGTTMSVLIRLQLASPGNDFLGGNHQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWLVPLMIGAPDMAFPRMNNISFWLLPPSLMLLLASALVESGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGASSVLGAINFIVTILNMRTPGMTMHRMPLFVWSVLVTAFLLLLALPVLASGITMLLTDRNFNTSFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILSTFSRKSVFGYLGMVYAMISIGILGFIVWAHHMFTVGLDIDTRA 333
[Close]
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Match: A0A649UBU4_AURAN (Cytochrome c oxidase subunit 1 n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A649UBU4_AURAN)

HSP 1 Score: 559 bits (1441), Expect = 5.880e-197
Identity = 270/312 (86.54%), Postives = 296/312 (94.87%), Query Frame = 1 
Query:   49 SVSSSALSDFFTRWFFSTNHKDIGTLYLIFGAFSGVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVLIGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVYAMLSIGVLGFLVWAHHMFTVGLDVDTRA 984
            +VS++AL  + +RW FSTNHKDIGTLYLIFGA +GV+GT +S++IR++LA PGN  L GNY LYNVIVT HAF+MIFFMVMPV+IGGFGNWFVPL+IGAPDMAFPRMNNISFWLLPPSL LLLAS+LVEAGAGTGWTVYPPLS +QAHSGPSVDLAIFSLH+SGA+SILGAINFITTIFNMRAPGMTMHRLPL VW+VLITAFLLLLSLPVLAG ITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFG++SHI+ATFSRKPVFGYLGMVYAMLSIG+LGF+VWAHHM+TVGLDVDTRA
Sbjct:    4 AVSNNALYSWASRWLFSTNHKDIGTLYLIFGAVAGVMGTTLSILIRMELAQPGNQILAGNYHLYNVIVTGHAFVMIFFMVMPVMIGGFGNWFVPLLIGAPDMAFPRMNNISFWLLPPSLFLLLASTLVEAGAGTGWTVYPPLSSVQAHSGPSVDLAIFSLHVSGASSILGAINFITTIFNMRAPGMTMHRLPLMVWAVLITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGMISHIVATFSRKPVFGYLGMVYAMLSIGILGFIVWAHHMYTVGLDVDTRA 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14135.2871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L6KY02_9PHAE1.070e-22295.12Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum f... [more]
A0A0U1XAH8_SARHM8.760e-22294.82Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyc... [more]
A0A8F0K0Q8_9PHAE1.260e-21191.16Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
E6ZES6_ECTSI1.680e-21094.55Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A7S6UA19_9STRA8.260e-20392.69Cytochrome c oxidase subunit 1 n=5 Tax=Stramenopil... [more]
Q2TUB0_DICDH3.040e-20193.36Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyce... [more]
A0A8E8PDM6_9PHAE5.700e-20190.46Cytochrome c oxidase subunit 1 n=2 Tax=Phaeophycea... [more]
O99385_9STRA4.160e-19995.85Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=... [more]
A0A5K7TLP3_9PHAE6.070e-19889.61Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A649UBU4_AURAN5.880e-19786.54Cytochrome c oxidase subunit 1 n=2 Tax=Pelagomonad... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14135contigH-elongata_contig14135:850..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score542.3
Seed ortholog evalue1.5e-151
Seed eggNOG ortholog70448.Q0P3F1
Preferred namecox1
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.Cytochrome C and Quinol oxidase polypeptide I
EggNOG OGs34JUG@3041,37QZZ@33090,COG0843@1,KOG4769@2759
EC1.9.3.1
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting categorysignal anchor
Exons1
Model size1005
Cds size1005
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.7702856-CDS-H-elongata_contig14135:849..18541622929840.7702856-CDS-H-elongata_contig14135:849..1854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14135 850..1854 +
1691679179.050658-CDS-H-elongata_contig14135:849..18541691679179.050658-CDS-H-elongata_contig14135:849..1854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14135 850..1854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14135.2871.1prot_H-elongata_contig14135.2871.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14135 850..1854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14135.2871.1

>prot_H-elongata_contig14135.2871.1 ID=prot_H-elongata_contig14135.2871.1|Name=mRNA_H-elongata_contig14135.2871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=335bp
MSFIEHLKPSWQTFFPSVSSSALSDFFTRWFFSTNHKDIGTLYLIFGAFS
GVLGTAMSVVIRLQLASPGNMFLGGNYQLYNVIVTAHAFLMIFFMVMPVL
IGGFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGT
GWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAP
GMTMHRLPLFVWSVLITAFLLLLSLPVLAGGITMLLTDRNFNTTFFDPAG
GGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVY
AMLSIGVLGFLVWAHHMFTVGLDVDTRARVRMTP*
back to top

mRNA from alignment at H-elongata_contig14135:850..1854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14135.2871.1 ID=mRNA_H-elongata_contig14135.2871.1|Name=mRNA_H-elongata_contig14135.2871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-elongata_contig14135:850..1854+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTTTATCGAACATTTAAAACCTTCTTGGCAAACGTTTTTCCCATC
GGTTTCTAGCTCAGCATTGAGTGATTTCTTTACGAGGTGGTTTTTTTCCA
CAAATCACAAGGATATAGGTACATTATATTTAATTTTTGGAGCTTTTTCG
GGAGTATTAGGAACAGCTATGTCTGTTGTTATAAGATTACAGCTTGCAAG
CCCTGGAAATATGTTTTTAGGTGGTAATTACCAATTATATAATGTTATTG
TTACTGCGCACGCTTTTTTAATGATTTTTTTTATGGTTATGCCAGTACTT
ATAGGTGGGTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCTCCGGA
TATGGCGTTTCCTCGAATGAATAATATTAGTTTTTGGTTATTGCCGCCAT
CGCTAATTCTTCTTTTAGCTTCTTCATTAGTAGAGGCTGGAGCAGGTACT
GGTTGGACTGTATATCCACCATTAAGTGGTATTCAGGCACACTCGGGACC
TTCGGTTGATTTAGCTATATTTAGTCTTCACTTATCAGGTGCAGCCTCTA
TTCTTGGCGCTATTAACTTTATTACAACTATTTTTAATATGCGTGCCCCA
GGTATGACCATGCATCGTTTACCTTTATTTGTATGGTCTGTTTTAATTAC
AGCTTTTTTACTTCTTTTATCTCTTCCTGTTTTAGCTGGTGGTATAACTA
TGCTATTAACAGATCGTAACTTTAATACGACGTTTTTTGACCCTGCAGGT
GGTGGTGATCCTGTTCTTTATCAGCATTTATTTTGGTTTTTTGGTCATCC
TGAAGTATACATTTTGATTTTACCAGGATTTGGGATTGTTAGTCATATTT
TAGCAACTTTTTCACGTAAGCCTGTTTTTGGTTATTTAGGTATGGTTTAT
GCTATGCTTTCTATTGGTGTTCTTGGATTTCTTGTTTGGGCTCACCATAT
GTTTACAGTAGGTTTGGACGTGGATACCCGTGCTAGAGTGAGAATGACGC
CGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14135:850..1854+

>mRNA_H-elongata_contig14135.2871.1 ID=mRNA_H-elongata_contig14135.2871.1|Name=mRNA_H-elongata_contig14135.2871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2010bp|location=Sequence derived from alignment at H-elongata_contig14135:850..1854+ (Himanthalia elongata Himel1 dioecious)
ATGTCTTTTATCGAACATTTAAAACCTTCTTGGCAAACGTTTTTCCCATC
GGTTTCTAGCTCAGCATTGAGTGATTTCTTTACGAGGTGGTTTTTTTCCA
CAAATCACAAGGATATAGGTACATTATATTTAATTTTTGGAGCTTTTTCG
GGAGTATTAGGAACAGCTATGTCTGTTGTTATAAGATTACAGCTTGCAAG
CCCTGGAAATATGTTTTTAGGTGGTAATTACCAATTATATAATGTTATTG
TTACTGCGCACGCTTTTTTAATGATTTTTTTTATGGTTATGCCAGTACTT
ATAGGTGGGTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCTCCGGA
TATGGCGTTTCCTCGAATGAATAATATTAGTTTTTGGTTATTGCCGCCAT
CGCTAATTCTTCTTTTAGCTTCTTCATTAGTAGAGGCTGGAGCAGGTACT
GGTTGGACTGTATATCCACCATTAAGTGGTATTCAGGCACACTCGGGACC
TTCGGTTGATTTAGCTATATTTAGTCTTCACTTATCAGGTGCAGCCTCTA
TTCTTGGCGCTATTAACTTTATTACAACTATTTTTAATATGCGTGCCCCA
GGTATGACCATGCATCGTTTACCTTTATTTGTATGGTCTGTTTTAATTAC
AGCTTTTTTACTTCTTTTATCTCTTCCTGTTTTAGCTGGTGGTATAACTA
TGCTATTAACAGATCGTAACTTTAATACGACGTTTTTTGACCCTGCAGGT
GGTGGTGATCCTGTTCTTTATCAGCATTTATTTTGGTTTTTTGGTCATCC
TGAAGTATACATTTTGATTTTACCAGGATTTGGGATTGTTAGTCATATTT
TAGCAACTTTTTCACGTAAGCCTGTTTTTGGTTATTTAGGTATGGTTTAT
GCTATGCTTTCTATTGGTGTTCTTGGATTTCTTGTTTGGGCTCACCATAT
GTTTACAGTAGGTTTGGACGTGGATACCCGTGCTAGAGTGAGAATGACGC
CGTAAATGTCTTTTATCGAACATTTAAAACCTTCTTGGCAAACGTTTTTC
CCATCGGTTTCTAGCTCAGCATTGAGTGATTTCTTTACGAGGTGGTTTTT
TTCCACAAATCACAAGGATATAGGTACATTATATTTAATTTTTGGAGCTT
TTTCGGGAGTATTAGGAACAGCTATGTCTGTTGTTATAAGATTACAGCTT
GCAAGCCCTGGAAATATGTTTTTAGGTGGTAATTACCAATTATATAATGT
TATTGTTACTGCGCACGCTTTTTTAATGATTTTTTTTATGGTTATGCCAG
TACTTATAGGTGGGTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCT
CCGGATATGGCGTTTCCTCGAATGAATAATATTAGTTTTTGGTTATTGCC
GCCATCGCTAATTCTTCTTTTAGCTTCTTCATTAGTAGAGGCTGGAGCAG
GTACTGGTTGGACTGTATATCCACCATTAAGTGGTATTCAGGCACACTCG
GGACCTTCGGTTGATTTAGCTATATTTAGTCTTCACTTATCAGGTGCAGC
CTCTATTCTTGGCGCTATTAACTTTATTACAACTATTTTTAATATGCGTG
CCCCAGGTATGACCATGCATCGTTTACCTTTATTTGTATGGTCTGTTTTA
ATTACAGCTTTTTTACTTCTTTTATCTCTTCCTGTTTTAGCTGGTGGTAT
AACTATGCTATTAACAGATCGTAACTTTAATACGACGTTTTTTGACCCTG
CAGGTGGTGGTGATCCTGTTCTTTATCAGCATTTATTTTGGTTTTTTGGT
CATCCTGAAGTATACATTTTGATTTTACCAGGATTTGGGATTGTTAGTCA
TATTTTAGCAACTTTTTCACGTAAGCCTGTTTTTGGTTATTTAGGTATGG
TTTATGCTATGCTTTCTATTGGTGTTCTTGGATTTCTTGTTTGGGCTCAC
CATATGTTTACAGTAGGTTTGGACGTGGATACCCGTGCTAGAGTGAGAAT
GACGCCGTAA
back to top