mRNA_H-elongata_contig141322.2866.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141322.2866.1
Unique NamemRNA_H-elongata_contig141322.2866.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141322.2866.1 vs. uniprot
Match: A0A2I3GMY6_NOMLE (Kinesin light chain n=1 Tax=Nomascus leucogenys TaxID=61853 RepID=A0A2I3GMY6_NOMLE)

HSP 1 Score: 52.8 bits (125), Expect = 9.210e-6
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 3 
Query:    6 DHLDMAIDLTNLAALLKSQGDYDASEKYYKRALIIFEKQLDRHHPRIAR 152
            +H D+A  L NLA L ++QG Y+A E+YY+RAL I+E QL   +P +AR
Sbjct:  229 NHPDVAKQLNNLALLCQNQGKYEAVERYYQRALAIYEGQLGPDNPNVAR 277
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BLAST of mRNA_H-elongata_contig141322.2866.1 vs. uniprot
Match: A0A0R3RDF3_9BILA (Kinesin light chain n=2 Tax=Brugia timori TaxID=42155 RepID=A0A0R3RDF3_9BILA)

HSP 1 Score: 47.4 bits (111), Expect = 7.180e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 3 
Query:    6 DHLDMAIDLTNLAALLKSQGDYDASEKYYKRALIIFEKQL 125
            DH D+A  L NLA L ++QG YD  EK+YKRAL I+E +L
Sbjct:    4 DHPDVAKQLNNLALLCQNQGKYDEVEKFYKRALEIYETKL 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141322.2866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2I3GMY6_NOMLE9.210e-651.02Kinesin light chain n=1 Tax=Nomascus leucogenys Ta... [more]
A0A0R3RDF3_9BILA7.180e-557.50Kinesin light chain n=2 Tax=Brugia timori TaxID=42... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141322contigH-elongata_contig141322:31..1641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size314
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141322.2866.1prot_H-elongata_contig141322.2866.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141322 48..1641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.438488-UTR-H-elongata_contig141322:30..471622929840.438488-UTR-H-elongata_contig141322:30..47Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141322 31..47 +
1691679178.9281178-UTR-H-elongata_contig141322:30..471691679178.9281178-UTR-H-elongata_contig141322:30..47Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141322 31..47 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.4641626-CDS-H-elongata_contig141322:47..921622929840.4641626-CDS-H-elongata_contig141322:47..92Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141322 48..92 +
1691679178.9375958-CDS-H-elongata_contig141322:47..921691679178.9375958-CDS-H-elongata_contig141322:47..92Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141322 48..92 +
1622929840.4814198-CDS-H-elongata_contig141322:1101..12271622929840.4814198-CDS-H-elongata_contig141322:1101..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141322 1102..1227 +
1691679178.946748-CDS-H-elongata_contig141322:1101..12271691679178.946748-CDS-H-elongata_contig141322:1101..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141322 1102..1227 +
1622929840.5021598-CDS-H-elongata_contig141322:1515..16411622929840.5021598-CDS-H-elongata_contig141322:1515..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141322 1516..1641 +
1691679178.9568465-CDS-H-elongata_contig141322:1515..16411691679178.9568465-CDS-H-elongata_contig141322:1515..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141322 1516..1641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141322.2866.1

>prot_H-elongata_contig141322.2866.1 ID=prot_H-elongata_contig141322.2866.1|Name=mRNA_H-elongata_contig141322.2866.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MAIDLTNLAALLKSQGDYDASEKYYKRALIIFEKQLDRHHPRIARLLCDL
AGLLHDKGEHDEAKERYRQAISIREHDPDRLDMAIELTNLAALLKSQVT
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mRNA from alignment at H-elongata_contig141322:31..1641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141322.2866.1 ID=mRNA_H-elongata_contig141322.2866.1|Name=mRNA_H-elongata_contig141322.2866.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1611bp|location=Sequence derived from alignment at H-elongata_contig141322:31..1641+ (Himanthalia elongata Himel1 dioecious)
GTCCCGACCACCTGGATATGGCTATAGATCTGACCAACTTGGCGGCGCTA
CTTAAGTCACAGGTGACTGCCGATATGTATTTGTTGGCAATGAGAGCTCG
ACCTGGATCTTGACAGAGGCGAGGTCATGACCTCCTAATGAGGCTGTAAC
TCTTACGAATCAGCTGTAGCGGTCGAGCGTGTTGCCTCCCGCTTGCTCTA
GAACCGAGACCCTGGCCATGTTGCTTTCATGTATGCATGCAATTAAAAGA
AGAGATGCAGGTAGTGTTCAGTACCCTGGTATCTCTCGCTATCGCCGATA
AAGCCCTAGACCCCGTCTAGGCACTAACCTTGAGATACTGGGTCGTGCGG
AAATGGAGAGGTGTAGAGGCTTTATCAGTAGTGTGAGGAAGCGACGACTC
CGTGACTTGGCTCTACAAAAACGGATGATACAGGCCTTGGTTTGGTTTGT
GCTTCGGAGTGATGACTGCTTTTAACCTATATGTTGGTCATCAACAATCT
GTCTGATTGATAACCGACGAAAGTTAAATAGTTATTTGATGAAAGTATAA
CCACTAACCACTTCCAACGATTCCACTTTATATCCTAACACTGTCACGGT
AGCTGCACGTCCACTTCGGGCTTGTTTGGAAATTCGTTCGGGACTTCTTT
TTCGTATTTGAAGTCGGAATTTTGATTCGACCTACGCCATTCATCTTTCA
TTGGAACTGAAAGCATTGACTGCGCTTTCGGTATTAATTATGTTTATTTA
ATTCCGCTTCGCCGCAAAACATCCGTGAAATCGATCCCTGGTTATGGAGG
GAGTGCCTACCGTGGTATTTATTTTTTATAATCCTTCTGGCTTTACACAA
GGCAGGGATGGTACTAAAAGATAGCTATGAGCTAAATGCGTTATCGCTCG
TGCTCTTATGGAGAGAATATATATTCCTGGGAATCTGGTATAGCCTTACG
GGTAATATGTGGCGAGTGTGTCGTTGATGGAGAATGTTGCGCAGTTAGTT
GTTGATCAAACAGTTGCTCTGCATTTCAAGCCCTTATACAACTCCCGTCC
CTCACTTTTCTCGCATTCCAGGGTGACTACGACGCCTCTGAGAAATATTA
CAAGCGTGCCCTCATCATCTTCGAAAAACAACTTGATCGTCACCACCCAC
GGATCGCGAGGCTTCTGTGTGATCTGGCAGGATTGTTACATGACAAGGTG
GTACTCTCTGGGCAACTAACAATACACGGATTATTGTTTTTAGTTGCGAT
CAATCGTGACACCGACCCCTCCAAAATGCCTGATTACGTTAAGAAGGATC
GAACGACCAGCATTAGGTCGCTTTACCTCTACTACTGCTGAGGAGCCACG
GGACTGGTCTAGGCATATTTGATACAAACCCTTTGTGGAACATTTTCGGC
AACCTCCTTGAGGAAGAACGCTGCGTTGTTGAAAGTCGACTCCAGCCCAT
TTCACCCTTCCTCGCGCTTTGGTTTTGAACTACAGGGGGAGCATGACGAG
GCCAAAGAGCGTTATAGGCAAGCTATTAGCATTCGTGAACATGATCCCGA
CCGCCTGGATATGGCTATAGAACTGACCAACTTGGCGGCGCTACTTAAGT
CACAGGTGACT
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Coding sequence (CDS) from alignment at H-elongata_contig141322:31..1641+

>mRNA_H-elongata_contig141322.2866.1 ID=mRNA_H-elongata_contig141322.2866.1|Name=mRNA_H-elongata_contig141322.2866.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig141322:31..1641+ (Himanthalia elongata Himel1 dioecious)
ATGGCTATAGATCTGACCAACTTGGCGGCGCTACTTAAGTCACAGATGGC
TATAGATCTGACCAACTTGGCGGCGCTACTTAAGTCACAGGGTGACTACG
ACGCCTCTGAGAAATATTACAAGCGTGCCCTCATCATCTTCGAAAAACAA
CTTGATCGTCACCACCCACGGATCGCGAGGCTTCTGTGTGATCTGGCAGG
ATTGTTACATGACAAGGGTGACTACGACGCCTCTGAGAAATATTACAAGC
GTGCCCTCATCATCTTCGAAAAACAACTTGATCGTCACCACCCACGGATC
GCGAGGCTTCTGTGTGATCTGGCAGGATTGTTACATGACAAGGGGGAGCA
TGACGAGGCCAAAGAGCGTTATAGGCAAGCTATTAGCATTCGTGAACATG
ATCCCGACCGCCTGGATATGGCTATAGAACTGACCAACTTGGCGGCGCTA
CTTAAGTCACAGGTGACTGGGGAGCATGACGAGGCCAAAGAGCGTTATAG
GCAAGCTATTAGCATTCGTGAACATGATCCCGACCGCCTGGATATGGCTA
TAGAACTGACCAACTTGGCGGCGCTACTTAAGTCACAGGTGACT
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