mRNA_H-elongata_contig141307.2862.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141307.2862.1
Unique NamemRNA_H-elongata_contig141307.2862.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.920e-16
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:   25 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQ 144
            GHTVQFCRDQHGSRFIQQKLEVS++EDKEAFF EILPHTQ
Sbjct:  212 GHTVQFCRDQHGSRFIQQKLEVSTDEDKEAFFNEILPHTQ 251
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BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A835YYE4_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.650e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   25 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQ 144
            GHTVQFCRDQHGSRFIQQKLEV+SE +K AFFEE++PH Q
Sbjct:    1 GHTVQFCRDQHGSRFIQQKLEVASEAEKAAFFEEVVPHAQ 40
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BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 5.320e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   25 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILP 135
            GHTVQFCRDQHGSRFIQQKLEVS++EDKEAFF EILP
Sbjct:  507 GHTVQFCRDQHGSRFIQQKLEVSTDEDKEAFFNEILP 543
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BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A251ULJ6_HELAN (Putative armadillo-type fold protein n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251ULJ6_HELAN)

HSP 1 Score: 64.3 bits (155), Expect = 9.260e-11
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   25 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 147
            GH V+FC DQHGSRFIQQKLEV S EDKE+ F+E+LP+  R
Sbjct:   67 GHIVEFCGDQHGSRFIQQKLEVCSNEDKESVFKEVLPNASR 107
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BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: UPI001CB9D366 (pumilio homolog 5-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9D366)

HSP 1 Score: 63.5 bits (153), Expect = 1.790e-10
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 147
            R  +P   GH ++F  DQHGSRFIQQKLE+ S+E+KE+ F+E+LPH  R
Sbjct:  512 RLELPDIYGHIIEFSVDQHGSRFIQQKLEICSKEEKESVFKEVLPHASR 560
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BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: UPI000B8C6EB0 (pumilio homolog 6, chloroplastic-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C6EB0)

HSP 1 Score: 60.5 bits (145), Expect = 4.320e-10
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPH 138
            R  +   AGH V+F  DQHGSRFIQQKLE+ S E+KE+ F+E+LPH
Sbjct:   45 RFELSDIAGHIVEFSADQHGSRFIQQKLEICSFEEKESVFKEVLPH 90
[Close]
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: UPI001FB15078 (pumilio homolog 6, chloroplastic-like isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB15078)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 147
            R  +   AGH VQF  DQHGSRFIQQKLE  S EDK + F+E+LPH  R
Sbjct:  616 RFELSDIAGHIVQFSADQHGSRFIQQKLENCSAEDKASVFKEVLPHASR 664
[Close]
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: W1PYD1_AMBTC (PUM-HD domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PYD1_AMBTC)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-9
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILP 135
            R  +P   GH V+F  DQHGSRFIQQKLE  S E+KE+ F+E+LP
Sbjct:  668 RRELPEITGHIVEFSADQHGSRFIQQKLETCSPEEKESVFQEVLP 712
[Close]
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A6P5WLT1_DURZI (pumilio homolog 5 isoform X1 n=3 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5WLT1_DURZI)

HSP 1 Score: 60.1 bits (144), Expect = 2.980e-9
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   10 IPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR 147
            +   +GH V+F  DQHGSRFIQQKLE  S EDKE+ F+E+LPH  R
Sbjct:  672 LSNISGHIVEFSVDQHGSRFIQQKLEHCSVEDKESVFKEVLPHASR 717
[Close]
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Match: A0A2J6M9A8_LACSA (PUM-HD domain-containing protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6M9A8_LACSA)

HSP 1 Score: 59.7 bits (143), Expect = 4.080e-9
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   25 GHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPH 138
            GH V+FC DQHGSRFIQQKLE+ S E+KE+ F+E+LP+
Sbjct:  444 GHIVEFCGDQHGSRFIQQKLEICSVEEKESVFKEVLPN 481
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141307.2862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWZ0_ECTSI1.920e-1692.50PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YYE4_9STRA2.650e-1482.50Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A6H5KS31_9PHAE5.320e-1491.89PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A251ULJ6_HELAN9.260e-1170.73Putative armadillo-type fold protein n=2 Tax=Helia... [more]
UPI001CB9D3661.790e-1057.14pumilio homolog 5-like n=1 Tax=Erigeron canadensis... [more]
UPI000B8C6EB04.320e-1060.87pumilio homolog 6, chloroplastic-like n=1 Tax=Cari... [more]
UPI001FB150781.170e-961.22pumilio homolog 6, chloroplastic-like isoform X1 n... [more]
W1PYD1_AMBTC1.600e-960.00PUM-HD domain-containing protein n=1 Tax=Amborella... [more]
A0A6P5WLT1_DURZI2.980e-960.87pumilio homolog 5 isoform X1 n=3 Tax=Durio zibethi... [more]
A0A2J6M9A8_LACSA4.080e-968.42PUM-HD domain-containing protein n=3 Tax=Lactuca T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141307contigH-elongata_contig141307:12..161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.5e-14
Seed eggNOG ortholog2880.D7FWZ0
Preferred namePUF2
KEGG koko:K17943,ko:K17944
GOsGO:0000003,GO:0000288,GO:0000956,GO:0001101,GO:0002252,GO:0002376,GO:0003006,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006884,GO:0006950,GO:0006952,GO:0006970,GO:0007049,GO:0007097,GO:0007276,GO:0007281,GO:0007338,GO:0007346,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008152,GO:0008285,GO:0008306,GO:0008355,GO:0008361,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009566,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009651,GO:0009819,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009992,GO:0010035,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0019725,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030104,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035046,GO:0035770,GO:0036464,GO:0040019,GO:0042048,GO:0042127,GO:0042221,GO:0042592,GO:0043073,GO:0043170,GO:0043186,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045495,GO:0045786,GO:0045787,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0046700,GO:0046907,GO:0048468,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050779,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051445,GO:0051446,GO:0051607,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051726,GO:0051728,GO:0051729,GO:0055082,GO:0060184,GO:0060255,GO:0060293,GO:0061013,GO:0061014,GO:0061157,GO:0061158,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000243
EggNOG free text desc.mRNA binding
EggNOG OGsCOG5099@1,KOG1488@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.0511296-CDS-H-elongata_contig141307:11..1611622929840.0511296-CDS-H-elongata_contig141307:11..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141307 12..161 +
1691679178.7861798-CDS-H-elongata_contig141307:11..1611691679178.7861798-CDS-H-elongata_contig141307:11..161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141307 12..161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141307.2862.1prot_H-elongata_contig141307.2862.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141307 12..161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141307.2862.1

>prot_H-elongata_contig141307.2862.1 ID=prot_H-elongata_contig141307.2862.1|Name=mRNA_H-elongata_contig141307.2862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
RENIPRFAGHTVQFCRDQHGSRFIQQKLEVSSEEDKEAFFEEILPHTQR*
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mRNA from alignment at H-elongata_contig141307:12..161+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141307.2862.1 ID=mRNA_H-elongata_contig141307.2862.1|Name=mRNA_H-elongata_contig141307.2862.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig141307:12..161+ (Himanthalia elongata Himel1 dioecious)
CGCGAAAATATCCCTCGTTTCGCAGGCCACACGGTGCAGTTTTGCCGGGA
CCAGCATGGATCTCGTTTTATTCAGCAGAAGCTAGAGGTTTCTAGTGAGG
AAGATAAGGAGGCATTCTTTGAAGAGATCCTTCCGCACACGCAGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig141307:12..161+

>mRNA_H-elongata_contig141307.2862.1 ID=mRNA_H-elongata_contig141307.2862.1|Name=mRNA_H-elongata_contig141307.2862.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig141307:12..161+ (Himanthalia elongata Himel1 dioecious)
CGCGAAAATATCCCTCGTTTCGCAGGCCACACGGTGCAGTTTTGCCGGGA
CCAGCATGGATCTCGTTTTATTCAGCAGAAGCTAGAGGTTTCTAGTGAGG
AAGATAAGGAGGCATTCTTTGAAGAGATCCTTCCGCACACGCAGAGGTGA
CGCGAAAATATCCCTCGTTTCGCAGGCCACACGGTGCAGTTTTGCCGGGA
CCAGCATGGATCTCGTTTTATTCAGCAGAAGCTAGAGGTTTCTAGTGAGG
AAGATAAGGAGGCATTCTTTGAAGAGATCCTTCCGCACACGCAGAGGTGA
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