mRNA_H-elongata_contig14121.2856.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14121.2856.1
Unique NamemRNA_H-elongata_contig14121.2856.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: D7G6M5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M5_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.130e-22
Identity = 57/106 (53.77%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   25 QEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQ--------LEKVCTSGMRGRVPGV--------IAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLFAARN 294
            QEVPVKHVVVNKVV+ESV++GY+QRLSKGQ  G           L   C     G   G         +A+GA GVSLT  PYF V+V NVYGLRFM Q LFA R+
Sbjct:    6 QEVPVKHVVVNKVVDESVKEGYIQRLSKGQRRGWSSWSSLDPDFLRAWCWDVRPGHTGGAFLASLVPQVAKGAAGVSLTLGPYFHVKVPNVYGLRFMGQNLFAPRD 111          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: A0A835Z1W4_9STRA (Anion-transporting ATPase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 8.760e-17
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   19 RVQEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCTSGMRGRVPGVIAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLF 282
            R QEVPV+H+V+NKV+     +GY+QRL+KGQA G++QLE +                  G++LT+VP FD EVR VYGLR MA VLF
Sbjct:  330 REQEVPVEHMVINKVITAETSEGYVQRLTKGQAKGVRQLEALARDS--------------GIALTRVPMFDAEVRGVYGLRAMASVLF 403          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: D7G525_ECTSI (Catalase/peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G525_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 6.640e-12
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:  181 IAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLFAARN 294
            +A+GA GVSLT VPYFDVEVRNVYGLRFMAQ LFA R+
Sbjct:   65 VAKGAAGVSLTLVPYFDVEVRNVYGLRFMAQTLFAPRD 102          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: A0A4D9DG36_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG36_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.130e-10
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   19 RVQEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCTSGMRGRVPGVIAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLF 282
            R +++ V+H+VVNK+V++  Q  ++ R+ +GQA  +Q++E+           G++A+   G+S  QVPY DVEV+ V+GL+FMA   F
Sbjct:  348 RKEKIAVRHLVVNKLVQDEDQSQHMARIGRGQALCLQRVER-----------GLVADH--GLSTVQVPYLDVEVKGVFGLKFMADAAF 422          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: A0A8J6C886_DIALT (Uncharacterized protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C886_DIALT)

HSP 1 Score: 60.1 bits (144), Expect = 2.160e-8
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   19 RVQEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQL---EKVCTSGMRGRVPGVIAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLFA 285
            R Q V V+H+VVN++VE++    YL RL KGQ +  ++L        +   G  PG       GV ++ V Y+DVE+R VY LRF+A   F+
Sbjct:  370 REQRVSVRHLVVNQLVEQTSAPAYLSRLRKGQDSIARRLLGRASATEAAAGGAQPGAAGSEWAGVCVSPVRYYDVELRGVYPLRFLADKAFS 461          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: R1DSX4_EMIHU (ArsA_ATPase domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DSX4_EMIHU)

HSP 1 Score: 57.4 bits (137), Expect = 1.730e-7
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1
Query:    4 LTVRWRVQEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCTSGMRGRVPGVIAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLFAA 288
            L +  R + + V+  VVN+++   V DGY+ RL+ GQ   + +L+ +                   V +TQVPYFD E+R+VYGLR M   LF A
Sbjct:  270 LLLELRREGIAVRRGVVNRLIATDVADGYVARLANGQRQCLAELDDLAAR--------------CAVDVTQVPYFDTELRSVYGLRAMGNALFDA 350          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: R1FYY7_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FYY7_EMIHU)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-7
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1
Query:    4 LTVRWRVQEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCTSGMRGRVPGVIAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLFAA 288
            L +  R + + V+  VVN+++   V DGY+ RL+ GQ   + +L+ +                   V +TQVPYFD E+R+VYGLR M   LF A
Sbjct:  567 LLLELRREGIAVRRGVVNRLIATDVADGYVARLANGQRQCLAELDDLAAR--------------CAVDVTQVPYFDTELRSVYGLRAMGNALFDA 647          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: A0A1X6PKT4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PKT4_PORUM)

HSP 1 Score: 56.6 bits (135), Expect = 3.580e-7
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1
Query:    4 LTVRWRVQEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCTSGMRGRVPGVIAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLFA 285
            L    R   V V +V+VN V+  +  + +++RL KGQ   +++L                A    GV++TQVPYFDVEVR  +GLR M +V+F+
Sbjct:  757 LVAALRTDHVAVANVIVNLVLPANAAEPFVRRLVKGQTGCLEKLRT--------------AVKEKGVAVTQVPYFDVEVRGEFGLRAMGEVMFS 836          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: A0A6U2HNB3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2HNB3_HEMAN)

HSP 1 Score: 53.5 bits (127), Expect = 4.310e-6
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   31 VPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCTSGMRGRVPGVIAEGAPG-VSLTQVPYFDVEVRNVYGLRFMAQVLF 282
            V V+  +VN+V+ E    GY +R++K Q   +++L K   S        + A  A G V +++VPYFD E+R+VY LR +A  LF
Sbjct:  699 VAVRGAIVNQVMAEKASAGYAERVAKSQDGCLKRLNKAADSA------SLTASAASGPVLVSEVPYFDTELRSVYALRALAAKLF 777          
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Match: A0A7S0LQI3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LQI3_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5
Identity = 26/92 (28.26%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   25 QEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCTSGMRGRVPGVIAEGAP--GVSLTQVPYFDVEVRNVYGLRFMAQVLFAARN 294
            Q++PV+H++VN+++ E    GY+ R+ + Q   +  ++               A  +P   ++ ++VP+FD+E+R VY L+F+ +V F   N
Sbjct:   15 QDIPVRHLIVNQLLTERANQGYMARIRQEQQRALSSID---------------AGSSPLSALATSRVPFFDMEMRGVYPLQFLGKVAFEGEN 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14121.2856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G6M5_ECTSI2.130e-2253.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1W4_9STRA8.760e-1750.00Anion-transporting ATPase-like domain-containing p... [more]
D7G525_ECTSI6.640e-1281.58Catalase/peroxidase n=1 Tax=Ectocarpus siliculosus... [more]
A0A4D9DG36_9STRA5.130e-1038.64Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J6C886_DIALT2.160e-839.13Uncharacterized protein n=4 Tax=Diacronema lutheri... [more]
R1DSX4_EMIHU1.730e-735.79ArsA_ATPase domain-containing protein n=1 Tax=Emil... [more]
R1FYY7_EMIHU1.890e-735.79Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A1X6PKT4_PORUM3.580e-736.17Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A6U2HNB3_HEMAN4.310e-637.65Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S0LQI3_9EUKA1.040e-528.26Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14121contigH-elongata_contig14121:7094..7825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_010020.1
Exons2
Model size297
Cds size297
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.6336174-CDS-H-elongata_contig14121:7093..72101622929839.6336174-CDS-H-elongata_contig14121:7093..7210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14121 7094..7210 -
1691679178.60918-CDS-H-elongata_contig14121:7093..72101691679178.60918-CDS-H-elongata_contig14121:7093..7210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14121 7094..7210 -
1622929839.644222-CDS-H-elongata_contig14121:7645..78251622929839.644222-CDS-H-elongata_contig14121:7645..7825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14121 7646..7825 -
1691679178.6166456-CDS-H-elongata_contig14121:7645..78251691679178.6166456-CDS-H-elongata_contig14121:7645..7825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14121 7646..7825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14121.2856.1prot_H-elongata_contig14121.2856.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14121 7094..7825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14121.2856.1

>prot_H-elongata_contig14121.2856.1 ID=prot_H-elongata_contig14121.2856.1|Name=mRNA_H-elongata_contig14121.2856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MLTVRWRVQEVPVKHVVVNKVVEESVQDGYLQRLSKGQAAGIQQLEKVCT
SGMRGRVPGVIAEGAPGVSLTQVPYFDVEVRNVYGLRFMAQVLFAARN*
back to top

mRNA from alignment at H-elongata_contig14121:7094..7825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14121.2856.1 ID=mRNA_H-elongata_contig14121.2856.1|Name=mRNA_H-elongata_contig14121.2856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig14121:7094..7825- (Himanthalia elongata Himel1 dioecious)
ATGCTGACCGTTCGTTGGCGGGTGCAGGAGGTACCAGTGAAGCATGTGGT GGTCAATAAGGTGGTGGAGGAATCTGTACAGGATGGGTACCTCCAGCGGC TTTCAAAAGGCCAGGCCGCAGGAATTCAGCAGCTGGAGAAGGTATGTACA TCAGGGATGCGGGGCAGAGTGCCTGGGGTTGTTTAAAGCCTTAAAGAGTT GTTTAAGACTTGGAACGTCTGGGAGCATCATTCAGAAGCTGCTATTTGAT GGGTTCAAAGGTCAGGTCACCACCGACGGTTCATTGATACGGGTTCCGTA GTCAATGCTCTGAAGTTCCGAATGTCTCGACTACATTCACGTATGTCGCA GAGCGCCAGCCGCACCCTTCTTATTTCGCCCTGCCTTTATTCCTTCACTC TTCAAGTCGGAAGCGCTGGATCTACCTAACCTAGAGCGTGCTATCTCTTC GAAGAAAAAAGTTCGTCTCGTATCTCGGGTTGTGAGGCAGCGCCGCCCGT AAGACCACCTTATCGCGTGCCTGTTTTCGCCCCGTGACATGCACACGCTT CTAACGATGCCCCTTTTTCTTTACATGATGTCCCTTTGCTGACGGTGTCT CCGATGCTGCTGCAGATTGCGGAGGGGGCACCCGGCGTGTCTCTGACGCA GGTGCCGTACTTTGACGTCGAGGTCCGCAACGTTTATGGGTTGCGGTTCA TGGCCCAGGTGTTGTTTGCGGCTCGGAATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14121:7094..7825-

>mRNA_H-elongata_contig14121.2856.1 ID=mRNA_H-elongata_contig14121.2856.1|Name=mRNA_H-elongata_contig14121.2856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig14121:7094..7825- (Himanthalia elongata Himel1 dioecious)
ATGCTGACCGTTCGTTGGCGGGTGCAGGAGGTACCAGTGAAGCATGTGGT
GGTCAATAAGGTGGTGGAGGAATCTGTACAGGATGGGTACCTCCAGCGGC
TTTCAAAAGGCCAGGCCGCAGGAATTCAGCAGCTGGAGAAGGTATGTACA
TCAGGGATGCGGGGCAGAGTGCCTGGGGTTATGCTGACCGTTCGTTGGCG
GGTGCAGGAGGTACCAGTGAAGCATGTGGTGGTCAATAAGGTGGTGGAGG
AATCTGTACAGGATGGGTACCTCCAGCGGCTTTCAAAAGGCCAGGCCGCA
GGAATTCAGCAGCTGGAGAAGGTATGTACATCAGGGATGCGGGGCAGAGT
GCCTGGGGTTATTGCGGAGGGGGCACCCGGCGTGTCTCTGACGCAGGTGC
CGTACTTTGACGTCGAGGTCCGCAACGTTTATGGGTTGCGGTTCATGGCC
CAGGTGTTGTTTGCGGCTCGGAATTGAATTGCGGAGGGGGCACCCGGCGT
GTCTCTGACGCAGGTGCCGTACTTTGACGTCGAGGTCCGCAACGTTTATG
GGTTGCGGTTCATGGCCCAGGTGTTGTTTGCGGCTCGGAATTGA
back to top