mRNA_H-elongata_contig141208.2854.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141208.2854.1
Unique NamemRNA_H-elongata_contig141208.2854.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 3.690e-36
Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDFSSRSMFKKCPKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQ 276
            CVG FIVFNHPLS+HRCMEDFSS S FKK PKEL F+GIHKLK   APEPDNIIWENLEF K+KR  R NVTG +S + L ++FAL+++ TGIQ
Sbjct:    7 CVGAFIVFNHPLSVHRCMEDFSSLSRFKKYPKELKFQGIHKLKVVKAPEPDNIIWENLEFSKFKRRMRHNVTGLVSLMALTIAFALVMMTTGIQ 100          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GBE8_9STRA (PHM7_cyt domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBE8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.090e-18
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLK--AAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVF 285
            C   FIVFNH  S  RC+ D+ +S + +K+   PK+L F  IH LK  AAPEP NIIWENLE P  +R  R++ T F++F+LL+VS A+I LA G Q  F
Sbjct:  361 CECAFIVFNHVESQRRCLADYRTSTTWWKRYFQPKDLRFRRIHPLKVTAAPEPSNIIWENLETPPVERFARRSFTNFVTFLLLVVSCAIISLAQGAQQAF 460          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A024TEJ7_9STRA (PHM7_cyt domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEJ7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.790e-16
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLK--AAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVF 285
            C   F+VFNH  S  +CM D+ +S S +K+   P  L F GIH LK  AAPEP NI+WENLE    +R  R+++T  ++F+LL+VS A+I LA G Q  F
Sbjct:  348 CECAFVVFNHVESQQQCMADYRTSHSWWKRWFQPTALRFRGIHALKVSAAPEPSNIVWENLETSAVERFARRSLTNVVTFVLLIVSCAIISLAQGAQQTF 447          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: T0Q5C1_SAPDV (PHM7_cyt domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q5C1_SAPDV)

HSP 1 Score: 80.9 bits (198), Expect = 9.770e-16
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF--SSRSMFKKC-PKELMFEGIHKL--KAAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
            C   F+VFN   +  RC+ D+  S  S+ ++  PKEL F+G H L  + APEP NIIWENLE P  +R  R+ +T F++F+LLLVS A+I LA   Q  FA
Sbjct:  730 CDCAFVVFNSVEAQRRCLRDYRTSQYSLARRFQPKELRFQGTHALWVQQAPEPSNIIWENLEVPVRERRLRRYLTNFVTFLLLLVSCAVISLAQSAQATFA 830          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A485KTG1_9STRA (Aste57867_11460 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTG1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.460e-15
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVF 285
            C   F+VFNH  S  RC+ D+ +S S +K+   P+ L F G   LK   APEP NIIWENLE     R  R+++T F++FILL+VS A+I LA G Q  F
Sbjct:  390 CECAFVVFNHVESQRRCLNDYRTSASSWKRAWQPRGLRFRGTFPLKVIQAPEPSNIIWENLETTPTARFLRRSLTNFITFILLIVSCAIISLAQGAQKKF 489          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A1V9YX85_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YX85_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.610e-14
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF--SSRSMFKKC-PKELMFEGIH--KLKAAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
            C   F+VFN   +  RC+ D+  S  S+ +   PKEL FEG +  K++ APEP NIIWENLE P  +R  R+  T F++F+LLL+S  +I LA   Q  F+
Sbjct:  555 CECAFVVFNSVEAQKRCLRDYRMSCYSILRHFQPKELQFEGKYPLKIRQAPEPSNIIWENLEVPVAERRLRRYFTNFITFLLLLLSCGIISLAQSAQAKFS 655          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: A0A067BNG7_SAPPC (RSN1_7TM domain-containing protein n=2 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BNG7_SAPPC)

HSP 1 Score: 73.9 bits (180), Expect = 2.660e-13
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   46 RCMEDF--SSRSMFKKC-PKELMFEGIHKL--KAAPEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
            RC+ D+  S  S+ ++  PKEL F+G H L  + APEP NIIWENLE P  +R  R+ VT F++F+LLLVS A+I LA   Q  FA
Sbjct:  736 RCLRDYRTSQYSLARRFQPKELRFQGTHALWVQQAPEPSNIIWENLEVPVRERRFRRYVTNFVTFLLLLVSCAVISLAQSAQATFA 821          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GH45_9STRA (PHM7_cyt domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GH45_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.880e-13
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
            C   F+VFN   S  RC+ D+ +S   + +   PK L F+GIH+L+   APEP +IIWENLE    +R  R+  T F++F+LLL+S A+I +A   Q  F+
Sbjct:  481 CDSAFVVFNCVESQRRCVRDYRTSHKWYARYFQPKALRFQGIHRLQIQPAPEPSDIIWENLEVSTQERRYRRAFTNFIAFLLLLLSCAIISVAQSAQQTFS 581          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GFZ6_9STRA (PHM7_cyt domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFZ6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.880e-13
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
            C   F+VFN   S  RC+ D+ +S   + +   PK L F+GIH+L+   APEP +IIWENLE    +R  R+  T F++F+LLL+S A+I +A   Q  F+
Sbjct:  502 CDSAFVVFNCVESQRRCVRDYRTSHKWYARYFQPKALRFQGIHRLQIQPAPEPSDIIWENLEVSTQERRYRRAFTNFIAFLLLLLSCAIISVAQSAQQTFS 602          
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Match: W4GI25_9STRA (PHM7_cyt domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GI25_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.930e-13
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 CVGCFIVFNHPLSLHRCMEDF-SSRSMFKKC--PKELMFEGIHKLKA--APEPDNIIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA 288
            C   F+VFN   S  RC+ D+ +S   + +   PK L F+GIH+L+   APEP +IIWENLE    +R  R+  T F++F+LLL+S A+I +A   Q  F+
Sbjct:  502 CDSAFVVFNCVESQRRCVRDYRTSHKWYARYFQPKALRFQGIHRLQIQPAPEPSDIIWENLEVSTQERRYRRAFTNFIAFLLLLLSCAIISVAQSAQQTFS 602          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141208.2854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1M6_ECTSI3.690e-3671.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W4GBE8_9STRA9.090e-1851.00PHM7_cyt domain-containing protein n=8 Tax=Aphanom... [more]
A0A024TEJ7_9STRA2.790e-1648.00PHM7_cyt domain-containing protein n=2 Tax=Aphanom... [more]
T0Q5C1_SAPDV9.770e-1647.52PHM7_cyt domain-containing protein n=1 Tax=Saprole... [more]
A0A485KTG1_9STRA2.460e-1548.00Aste57867_11460 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YX85_9STRA7.610e-1444.55Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
A0A067BNG7_SAPPC2.660e-1351.16RSN1_7TM domain-containing protein n=2 Tax=Saprole... [more]
W4GH45_9STRA4.880e-1342.57PHM7_cyt domain-containing protein n=2 Tax=Aphanom... [more]
W4GFZ6_9STRA4.880e-1342.57PHM7_cyt domain-containing protein n=8 Tax=Aphanom... [more]
W4GI25_9STRA4.930e-1342.57PHM7_cyt domain-containing protein n=5 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141208contigH-elongata_contig141208:308..1000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue5e-31
Seed eggNOG ortholog2880.D7G1M6
KEGG rclassRC02795
KEGG koko:K03015
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
EggNOG OGs28SCF@1,2QZ1Z@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Hectar predicted targeting categorysignal anchor
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.1707237-CDS-H-elongata_contig141208:307..4621622929839.1707237-CDS-H-elongata_contig141208:307..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141208 308..462 -
1691679178.4585364-CDS-H-elongata_contig141208:307..4621691679178.4585364-CDS-H-elongata_contig141208:307..462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141208 308..462 -
1622929839.4465659-CDS-H-elongata_contig141208:867..10001622929839.4465659-CDS-H-elongata_contig141208:867..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141208 868..1000 -
1691679178.4710944-CDS-H-elongata_contig141208:867..10001691679178.4710944-CDS-H-elongata_contig141208:867..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141208 868..1000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141208.2854.1prot_H-elongata_contig141208.2854.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141208 308..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141208.2854.1

>prot_H-elongata_contig141208.2854.1 ID=prot_H-elongata_contig141208.2854.1|Name=mRNA_H-elongata_contig141208.2854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
CVGCFIVFNHPLSLHRCMEDFSSRSMFKKCPKELMFEGIHKLKAAPEPDN
IIWENLEFPKWKRTCRQNVTGFLSFILLLVSFALILLATGIQGVFA
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mRNA from alignment at H-elongata_contig141208:308..1000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141208.2854.1 ID=mRNA_H-elongata_contig141208.2854.1|Name=mRNA_H-elongata_contig141208.2854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=693bp|location=Sequence derived from alignment at H-elongata_contig141208:308..1000- (Himanthalia elongata Himel1 dioecious)
TGCGTTGGGTGCTTCATTGTCTTCAACCACCCCTTGAGCCTGCATAGGTG CATGGAGGATTTTTCTTCCCGGAGCATGTTTAAAAAGTGCCCGAAGGAGC TCATGTTTGAAGGAATCCATAAATTGAAGGCGGGTATTGAATAGGCTCTA GCCGAGCAGGTTTTATCGCTTCGGGCATGACCTTTCGTAGTCAGAGACTT TAGAGGGCGACATGTGTTGTTCGTGCGAGACACATCAAATAAATGATAAT GTATCGTTTCCGACAATCTGAGGGCGCGAGTTTTGGAAAATTATCCCGGA TAGAAATAAAATCTTGGAGTTCCAAGCAAAGATGACGACGTTAAGGCGGC AAAGGATAATAACCTAAAACATTGTCTTTGATGGATCGACTACGCCAGTA CTCAAGGTCGTGATGATTACAATCCAGATGCGACTTTTATTTTCCCCAGC TTAGGCTCGATGGGCGTGACCTCCTATTATTATCGTGAATCTTCTCTTCT TTCAAACAACGTGGGATATTGTTCACAGGTATCGAAAGCCCCGGAGCCAG ATAATATTATCTGGGAGAATTTGGAGTTCCCGAAGTGGAAGCGAACCTGT CGGCAGAACGTGACGGGCTTTCTGTCATTTATTTTGCTTTTGGTGTCCTT TGCGCTTATACTTTTGGCGACTGGCATTCAGGGTGTTTTCGCG
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Coding sequence (CDS) from alignment at H-elongata_contig141208:308..1000-

>mRNA_H-elongata_contig141208.2854.1 ID=mRNA_H-elongata_contig141208.2854.1|Name=mRNA_H-elongata_contig141208.2854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig141208:308..1000- (Himanthalia elongata Himel1 dioecious)
TGCGTTGGGTGCTTCATTGTCTTCAACCACCCCTTGAGCCTGCATAGGTG
CATGGAGGATTTTTCTTCCCGGAGCATGTTTAAAAAGTGCCCGAAGGAGC
TCATGTTTGAAGGAATCCATAAATTGAAGGCGGTGCGTTGGGTGCTTCAT
TGTCTTCAACCACCCCTTGAGCCTGCATAGGTGCATGGAGGATTTTTCTT
CCCGGAGCATGTTTAAAAAGTGCCCGAAGGAGCTCATGTTTGAAGGAATC
CATAAATTGAAGGCGGCCCCGGAGCCAGATAATATTATCTGGGAGAATTT
GGAGTTCCCGAAGTGGAAGCGAACCTGTCGGCAGAACGTGACGGGCTTTC
TGTCATTTATTTTGCTTTTGGTGTCCTTTGCGCTTATACTTTTGGCGACT
GGCATTCAGGGTGTTTTCGCGCCCCGGAGCCAGATAATATTATCTGGGAG
AATTTGGAGTTCCCGAAGTGGAAGCGAACCTGTCGGCAGAACGTGACGGG
CTTTCTGTCATTTATTTTGCTTTTGGTGTCCTTTGCGCTTATACTTTTGG
CGACTGGCATTCAGGGTGTTTTCGCG
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