mRNA_H-elongata_contig14113.2849.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14113.2849.1
Unique NamemRNA_H-elongata_contig14113.2849.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14113.2849.1 vs. uniprot
Match: D7FZK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.940e-12
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    1 MSCDLEAEVFHREVVKQEQEQLRRRLVAGHEEDIERLRRAIKEKEVDHNNEKIRMRWEHAEELEAERAELEDGGAAKDKLQEIQDMLERERDYHTRELDAER 306
            M+ DL AEVFHRE+VKQE+ Q RR+ +  HE ++  LR  +   ++ HNNEKI+MRWEHA+EL    AE  D    + +L+E + + E +   H   L  ER
Sbjct: 1015 MNHDLLAEVFHREIVKQEEAQKRRKQLEAHEAEVLALRDELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEERRLREEDEKRHEAALQKER 1116
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BLAST of mRNA_H-elongata_contig14113.2849.1 vs. uniprot
Match: A0A6H5JIX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.930e-11
Identity = 45/102 (44.12%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 MSCDLEAEVFHREVVKQEQEQLRRRLVAGHEEDIERLRRAIKEKEVDHNNEKIRMRWEHAEELEAERAELEDGGAAKDKLQEIQDMLERERDYHTRELDAER 306
            M+ DL AEVFHRE+VKQE+ Q RR+    HE +I  LR  +   ++ HNNEKI+MRWEHA+EL    AE  D    + +L+E + + E +   +   L  ER
Sbjct: 1512 MNHDLLAEVFHREIVKQEEAQKRRKQQEAHEAEILALRNELHAVQMSHNNEKIKMRWEHADELARVEAEGGDVVGMRQELEEERKLREEDERRYEAALQQER 1613
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14113.2849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZK0_ECTSI2.940e-1244.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIX2_9PHAE1.930e-1144.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14113contigH-elongata_contig14113:1288..2286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14113.2849.1prot_H-elongata_contig14113.2849.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14113 1288..2286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.861681-CDS-H-elongata_contig14113:1287..13361622929838.861681-CDS-H-elongata_contig14113:1287..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14113 1288..1336 -
1691679178.2961156-CDS-H-elongata_contig14113:1287..13361691679178.2961156-CDS-H-elongata_contig14113:1287..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14113 1288..1336 -
1622929838.8746827-CDS-H-elongata_contig14113:1857..19281622929838.8746827-CDS-H-elongata_contig14113:1857..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14113 1858..1928 -
1691679178.3056784-CDS-H-elongata_contig14113:1857..19281691679178.3056784-CDS-H-elongata_contig14113:1857..1928Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14113 1858..1928 -
1622929838.88596-CDS-H-elongata_contig14113:2100..22861622929838.88596-CDS-H-elongata_contig14113:2100..2286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14113 2101..2286 -
1691679178.3154533-CDS-H-elongata_contig14113:2100..22861691679178.3154533-CDS-H-elongata_contig14113:2100..2286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14113 2101..2286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14113.2849.1

>prot_H-elongata_contig14113.2849.1 ID=prot_H-elongata_contig14113.2849.1|Name=mRNA_H-elongata_contig14113.2849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MSCDLEAEVFHREVVKQEQEQLRRRLVAGHEEDIERLRRAIKEKEVDHNN
EKIRMRWEHAEELEAERAELEDGGAAKDKLQEIQDMLERERDYHTRELDA
ER
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mRNA from alignment at H-elongata_contig14113:1288..2286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14113.2849.1 ID=mRNA_H-elongata_contig14113.2849.1|Name=mRNA_H-elongata_contig14113.2849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig14113:1288..2286- (Himanthalia elongata Himel1 dioecious)
ATGTCGTGCGATCTAGAAGCGGAGGTGTTTCATCGAGAGGTGGTAAAACA
GGAACAGGAACAGCTTCGGCGGAGACTGGTGGCGGGGCACGAGGAGGACA
TCGAGCGGCTCCGTCGTGCGATCAAGGAAAAGGAGGTGGATCACAACAAC
GAGAAGATAAGGATGCGCTGGGAGCACGCGGAGGAGGTGAGTCCGTGTCT
CTTTGCGAGGAGGAATCTTGGTGAAGGCTATAACTTCTATCCACGGTTTA
GTGAGCCGCTTTATTTCCGGCTCCCTCTCTCCTCTTGTCCCCGTCCTTTT
CTCTTATCGCTATCCTCGATGCGAACTGCCCTTGCTGCTGCTTTGTTTGA
GCGAGAAGTTAGAAGCGGAGCGAGCTGAGCTGGAAGATGGCGGTGCGGCG
AAAGATAAGCTACAAGAGATCCAGGACATGTAAGCGGAAGGCGTTTGGTG
CGGCGCGTGATACAATCGCTCACCTTGTTCGATGCATGAGGAGCTCAGTC
GGGTTGGACTTCATGAGGAGCTCTGAATCTGTCTCTCTTTGTGTATCTGC
CTTTCTGTATACGTCTCTCTCGCTGTTTATCTCTCGCTCTGTTTATATTT
CTTTATGTATTTATCTCTTTGTTTCTCTTCTGCTTTTCTATGTTCTCGAA
ACGCCTTCGCCACGAAGCAAATTATTGATCATTACCCTTTATTAACACAA
GTATCATATTTGTTTTACTCGCTCGTTCTGTAGTTGACGATTGGCGAGGT
TCATCTTCCTCCCGATGCTGCCTTGCCTTGTCTTCCCTTGCAAGCCCTTT
CTCCCCAAGCAACGCGACAAAAAAACGAACTCGGACGCACCAGATCAGTG
GTAGTAGAAAACCAGAGTGAAGCTGGTTGGTGTCCCGCCGCCGTGATCAC
CTCGAACTTTAATGCTTACCTCTACTCTACGTTTTTTATCTATATCGCAG
GCTTGAACGGGAGCGTGACTACCACACGAGGGAGCTCGACGCCGAGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig14113:1288..2286-

>mRNA_H-elongata_contig14113.2849.1 ID=mRNA_H-elongata_contig14113.2849.1|Name=mRNA_H-elongata_contig14113.2849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig14113:1288..2286- (Himanthalia elongata Himel1 dioecious)
ATGTCGTGCGATCTAGAAGCGGAGGTGTTTCATCGAGAGGTGGTAAAACA
GGAACAGGAACAGCTTCGGCGGAGACTGGTGGCGGGGCACGAGGAGGACA
TCGAGCGGCTCCGTCGTGCGATCAAGGAAAAGGAGGTGGATCACAACAAC
GAGAAGATAAGGATGCGCTGGGAGCACGCGGAGGAGATGTCGTGCGATCT
AGAAGCGGAGGTGTTTCATCGAGAGGTGGTAAAACAGGAACAGGAACAGC
TTCGGCGGAGACTGGTGGCGGGGCACGAGGAGGACATCGAGCGGCTCCGT
CGTGCGATCAAGGAAAAGGAGGTGGATCACAACAACGAGAAGATAAGGAT
GCGCTGGGAGCACGCGGAGGAGTTAGAAGCGGAGCGAGCTGAGCTGGAAG
ATGGCGGTGCGGCGAAAGATAAGCTACAAGAGATCCAGGACATTTAGAAG
CGGAGCGAGCTGAGCTGGAAGATGGCGGTGCGGCGAAAGATAAGCTACAA
GAGATCCAGGACATGCTTGAACGGGAGCGTGACTACCACACGAGGGAGCT
CGACGCCGAGCGCGCTTGAACGGGAGCGTGACTACCACACGAGGGAGCTC
GACGCCGAGCGC
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