mRNA_H-elongata_contig141118.2848.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141118.2848.1
Unique NamemRNA_H-elongata_contig141118.2848.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A6H5KPF3_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPF3_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.960e-34
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNRTTEEKA 198
            Q W+KFCFTGGIVEIRA LPG  DIGGLWPAMWLMGNLARAT+TASSD+TWPWSYNKCNRTT+E+A
Sbjct:  170 QSWDKFCFTGGIVEIRAILPGRPDIGGLWPAMWLMGNLARATYTASSDFTWPWSYNKCNRTTDEQA 235
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BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A835YPV8_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV8_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.260e-29
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNRTTEEKA 198
            QGWNKFCFTGGIVE+ A LPG   IGGLWPA+WL+GNLARAT+T+SSDYTWPWSY++C+R+  E A
Sbjct:  116 QGWNKFCFTGGIVEVSAALPGEAYIGGLWPAIWLLGNLARATYTSSSDYTWPWSYDRCDRSDAEHA 181
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BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A835ZJH7_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJH7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.940e-29
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNRTTEEKA 198
             GWNKFCF GG+VE+ A LPG   IGGLWPA+WL+GNLARAT+T SSDYTWPWSYN+CNRT+ + A
Sbjct:  132 MGWNKFCFKGGVVEVSAALPGQAYIGGLWPAIWLLGNLARATYTGSSDYTWPWSYNECNRTSAQTA 197
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BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A7S3XMP4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMP4_HETAK)

HSP 1 Score: 114 bits (286), Expect = 1.720e-28
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNRTTEEK 195
            QGWNKFCF GGIVEI A LPG  DIGGLWPAMW+MGNLARATFT +SD  WPWS++KC+ T +++
Sbjct:  129 QGWNKFCFVGGIVEISAELPGQSDIGGLWPAMWIMGNLARATFTGTSDNVWPWSFDKCDPTVQQQ 193
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BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A448Z4I7_9STRA (GH16 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z4I7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.120e-27
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKC---NRTTEE 192
            QGWNKFCFTGGIVE RA+LPGS  IGGLWPA+W++GNLARAT+  SSDY WP+SYNKC   NR ++E
Sbjct:  134 QGWNKFCFTGGIVEFRAKLPGSPRIGGLWPALWMLGNLARATYVGSSDYMWPYSYNKCDASNRLSQE 200
[Close]
BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A7S2UJ77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ77_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.840e-27
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCN 177
            QGWNKFC TGGIVE RA+LPG    GGLWPA+W++GNLARAT+  SSD+ WP+SYN+CN
Sbjct:  153 QGWNKFCLTGGIVEFRAKLPGDSGTGGLWPALWMLGNLARATYVGSSDFMWPYSYNQCN 211
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BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A7S3K4P5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4P5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.350e-27
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNRTTEEK 195
            Q WNKFCFTGGIVEIRARLPG   +GGLWPAMWL+G L+RAT+  S+D+ WPWSYNKC+R  +++
Sbjct:   54 QTWNKFCFTGGIVEIRARLPGKAKVGGLWPAMWLLGALSRATYVGSTDWIWPWSYNKCDRALQKQ 118
[Close]
BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A7S0Y805_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y805_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.650e-27
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNR 180
            QGWNKFCFTGGIVE  A+LPGS  IGGLWPA+W+MGNLARAT+  SSDY WP+SYN+C++
Sbjct:  145 QGWNKFCFTGGIVEFSAKLPGSPRIGGLWPALWMMGNLARATYVGSSDYMWPYSYNQCDK 204
[Close]
BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A835YN37_9STRA (Beta-1,6-glucan active enzyme, family GH16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN37_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.860e-26
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    7 WNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNR 180
            WNKFCFTGGI+E+RA LPG H+IGGLWPA WL+GNL RAT+ AS++  WPWSYN+CNR
Sbjct:  143 WNKFCFTGGIIEMRAILPGEHNIGGLWPAFWLLGNLGRATYEASTNLVWPWSYNRCNR 200
[Close]
BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Match: A0A8J2SVF6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVF6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.900e-26
Identity = 43/65 (66.15%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYTWPWSYNKCNRTTEEK 195
            QGW KFCFTGGI+E+RARLPG+  +GGLWPAMWL+G LARAT+  S+D+ WPWS++KC+R+ + K
Sbjct:  176 QGWGKFCFTGGIMEVRARLPGAGHVGGLWPAMWLLGALARATYVGSTDWMWPWSFDKCDRSLQPK 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141118.2848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF3_9PHAE1.960e-3486.36GH16 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YPV8_9STRA1.260e-2974.24Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
A0A835ZJH7_9STRA2.940e-2972.73Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
A0A7S3XMP4_HETAK1.720e-2872.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A448Z4I7_9STRA1.120e-2773.13GH16 domain-containing protein n=1 Tax=Pseudo-nitz... [more]
A0A7S2UJ77_9STRA2.840e-2771.19Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S3K4P5_9STRA3.350e-2769.23Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0Y805_9STRA7.650e-2775.00Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A835YN37_9STRA1.860e-2674.14Beta-1,6-glucan active enzyme, family GH16 n=1 Tax... [more]
A0A8J2SVF6_9STRA1.900e-2666.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141118contigH-elongata_contig141118:760..960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.3e-29
Seed eggNOG ortholog2880.D7FT08
Preferred nameKRE6
KEGG koko:K21850
GOsGO:0000271,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005886,GO:0005933,GO:0005935,GO:0005975,GO:0005976,GO:0006073,GO:0006077,GO:0006078,GO:0006629,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0012505,GO:0015926,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016787,GO:0016798,GO:0030133,GO:0030148,GO:0030176,GO:0030427,GO:0031224,GO:0031227,GO:0031410,GO:0031505,GO:0031982,GO:0031984,GO:0033692,GO:0034637,GO:0034645,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046467,GO:0051273,GO:0051274,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0097708,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.(1->6)-beta-D-glucan biosynthetic process
EggNOG OGs2QR13@2759,COG2273@1
COG Functional cat.G
CAZyGH16
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-1,6-glucan active enzyme, family GH16
Ec32 orthologEc-24_004360.1
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.8213644-CDS-H-elongata_contig141118:759..9601622929838.8213644-CDS-H-elongata_contig141118:759..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141118 760..960 -
1691679178.2857192-CDS-H-elongata_contig141118:759..9601691679178.2857192-CDS-H-elongata_contig141118:759..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141118 760..960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141118.2848.1prot_H-elongata_contig141118.2848.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141118 760..960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141118.2848.1

>prot_H-elongata_contig141118.2848.1 ID=prot_H-elongata_contig141118.2848.1|Name=mRNA_H-elongata_contig141118.2848.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QGWNKFCFTGGIVEIRARLPGSHDIGGLWPAMWLMGNLARATFTASSDYT
WPWSYNKCNRTTEEKA*
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mRNA from alignment at H-elongata_contig141118:760..960-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141118.2848.1 ID=mRNA_H-elongata_contig141118.2848.1|Name=mRNA_H-elongata_contig141118.2848.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig141118:760..960- (Himanthalia elongata Himel1 dioecious)
CAGGGCTGGAACAAATTCTGTTTCACAGGGGGGATCGTCGAAATCAGGGC
GCGCTTGCCTGGAAGTCACGACATCGGAGGACTATGGCCGGCGATGTGGC
TCATGGGGAACCTCGCCAGGGCGACCTTCACGGCCTCCTCGGATTACACG
TGGCCGTGGAGCTATAACAAATGCAACCGTACCACCGAGGAAAAAGCGTG
A
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Coding sequence (CDS) from alignment at H-elongata_contig141118:760..960-

>mRNA_H-elongata_contig141118.2848.1 ID=mRNA_H-elongata_contig141118.2848.1|Name=mRNA_H-elongata_contig141118.2848.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig141118:760..960- (Himanthalia elongata Himel1 dioecious)
CAGGGCTGGAACAAATTCTGTTTCACAGGGGGGATCGTCGAAATCAGGGC
GCGCTTGCCTGGAAGTCACGACATCGGAGGACTATGGCCGGCGATGTGGC
TCATGGGGAACCTCGCCAGGGCGACCTTCACGGCCTCCTCGGATTACACG
TGGCCGTGGAGCTATAACAAATGCAACCGTACCACCGAGGAAAAAGCGTG
ACAGGGCTGGAACAAATTCTGTTTCACAGGGGGGATCGTCGAAATCAGGG
CGCGCTTGCCTGGAAGTCACGACATCGGAGGACTATGGCCGGCGATGTGG
CTCATGGGGAACCTCGCCAGGGCGACCTTCACGGCCTCCTCGGATTACAC
GTGGCCGTGGAGCTATAACAAATGCAACCGTACCACCGAGGAAAAAGCGT
GA
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