mRNA_H-elongata_contig14097.2838.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14097.2838.1
Unique NamemRNA_H-elongata_contig14097.2838.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 6.870e-58
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 1
Query:    4 QVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            QVFL+LDKSPLLF PV +RGVLARPDEI ++IASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPI A  QGPSST RATFRGVSSLLRHASAGTLSSVSGV+NALSRNL
Sbjct: 4355 QVFLALDKSPLLFRPVSLRGVLARPDEIAEQIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAMPQGPSSTFRATFRGVSSLLRHASAGTLSSVSGVSNALSRNL 4474          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A0H5QH82_9EUKA (VPS13_C domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QH82_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 3.890e-18
Identity = 44/121 (36.36%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    4 QVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            + +L     P+  S V ++ VL+  D ++  +++NY  D ++ S  + GS++ LG+PT L+S + KG+  L  +P  A  +GP +   AT +G+ SLL++ S GTL+SVSG T++L+RN++
Sbjct: 1726 RAYLGCQSLPVRLSAVELKSVLSSSDRLIKELSANYLADVIMISPLLFGSMDLLGNPTQLISSFSKGIQGLVRLPSRALTRGPRALAWATLQGIGSLLQNISEGTLTSVSGFTHSLARNVD 1846          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A7S1G5R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5R3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.100e-17
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   10 FLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQ-----GPSSTVRATF-RGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            FLS+D++PL  + V +  V A P+ +   + +NY  DA+LRS A+VGSLE LG+PT  +   G G+ DLFA+P+ A        G  + +   F RG  SL  H + G LSSV+G + ALSRNL+
Sbjct:   37 FLSVDEAPLALASVSLDCVRATPERLARELLANYIADAILRSPALVGSLELLGNPTRFMRGLGSGLRDLFALPMLAIRDREKGVGSGAGILTGFARGWGSLAAHVAEGALSSVAGFSAALSRNLD 161          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: UPI000719AC75 (vacuolar protein sorting-associated protein 13B-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AC75)

HSP 1 Score: 87.0 bits (214), Expect = 1.870e-17
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            L++FL+ D +PL F     R +   P  + + +  +YA  A LR+  VVGSL+ LGSPT++L E   G+ DLF MP      GP S +    RG +SLLRH SAG ++SV+    ++SRN++
Sbjct: 3696 LKLFLASDSTPLSFGAFERRDLCTTPWCLANALLRHYAAGAALRAGWVVGSLDLLGSPTSMLREVTSGMADLFRMPYEGATHGPGSFIAGMSRGAASLLRHTSAGAITSVTNFALSVSRNMD 3817          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A1W0XCX6_HYPDU (Vacuolar protein sorting-associated protein 13B n=2 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0XCX6_HYPDU)

HSP 1 Score: 84.0 bits (206), Expect = 2.230e-16
Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            L++F+ L+++PL FSP+    V +   E+ + +  +Y    LLR+  V+GS++ LG+P +LL     G  DLF  P N+ H GP S ++   +G SS +   SAGTL+SV+ +  ++SRNL+
Sbjct: 2402 LKMFVGLNQTPLSFSPIDCNDVNSTTTEVWNFVMQHYIRGTLLRAGWVIGSMDLLGNPASLLRSLSAGCGDLFVQPFNSLHAGPVSFLQGLAKGASSCVSGISAGTLTSVTNLAESVSRNLD 2523          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: R7TEM8_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TEM8_CAPTE)

HSP 1 Score: 83.6 bits (205), Expect = 3.050e-16
Identity = 49/122 (40.16%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            L+VFL+ D +PL F     + +     ++   +   YA  AL R+  VVGSLE LG+PT L     +GV DLF MP     +GP + +    RG+ SLLRH S GTL+S++   +++SRN+E
Sbjct: 3438 LKVFLASDNTPLKFGRYE-KSLFTSYQQLARSLTMYYASGALFRAGLVVGSLEILGNPTGLARHLSQGVADLFRMPYQGLTRGPGAFIGGVTRGMGSLLRHVSTGTLNSITSFASSVSRNME 3558          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A6P4ZTE8_BRABE (vacuolar protein sorting-associated protein 13B-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZTE8_BRABE)

HSP 1 Score: 82.0 bits (201), Expect = 1.060e-15
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            ++VF+S D + L F       V      +V  +A +Y   AL R+  V+GSL+ LGSP +LL     G+ D F +P     +GP + V    +G SSL+RH SAGTL+S+  + N++SRN++
Sbjct: 3548 MKVFISSDHTRLTFKHFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNMD 3669          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: C3ZQS8_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZQS8_BRAFL)

HSP 1 Score: 82.0 bits (201), Expect = 1.060e-15
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query:    1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            ++VF+S D + L F       V      +V  +A +Y   AL R+  V+GSL+ LGSP +LL     G+ D F +P     +GP + V    +G SSL+RH SAGTL+S+  + N++SRN++
Sbjct: 3879 MKVFISSDHTRLTFKNFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNMD 4000          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: H2XP00_CIOIN (Uncharacterized protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=H2XP00_CIOIN)

HSP 1 Score: 81.3 bits (199), Expect = 1.960e-15
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    4 QVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
            ++++S+D+  L FS    R V     E+   +  +Y  + +  +  V+GSL+ LG+P T L  + KGV D   MP      GP++ V    RG+SSLLRH S+GTL SV+ + +++SRNL
Sbjct: 3092 KLYVSIDRGVLSFSKFSCRDVDTTVAELTQELMRHYFAETVFGAGWVIGSLDLLGNPATALRSYAKGVSDFLLMPYEGLMMGPTAFVGGFTRGLSSLLRHLSSGTLRSVTNIASSISRNL 3211          
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: UPI00145500BC (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13B-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145500BC)

HSP 1 Score: 78.6 bits (192), Expect = 1.730e-14
Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
            L++F+++D +PL F+      V A   ++V  +  +Y   AL ++  V+GSLE LG+P  LL     G+ D F +P     +GP++ V     G SSLL+H SAGTL+S++   +++SRNL+
Sbjct: 3679 LKLFIAVDSTPLSFNQFDSGPVFATTRQLVQALTVHYTSGALFKAGWVLGSLEILGNPAGLLRNVRSGLTDSFMLPYEGLTRGPAAFVAGVTSGTSSLLKHLSAGTLTSITMFASSVSRNLD 3800          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE6.870e-5890.00VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
A0A0H5QH82_9EUKA3.890e-1836.36VPS13_C domain-containing protein n=2 Tax=Spongosp... [more]
A0A7S1G5R3_9STRA1.100e-1743.20Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
UPI000719AC751.870e-1740.98vacuolar protein sorting-associated protein 13B-li... [more]
A0A1W0XCX6_HYPDU2.230e-1637.70Vacuolar protein sorting-associated protein 13B n=... [more]
R7TEM8_CAPTE3.050e-1640.16Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A6P4ZTE8_BRABE1.060e-1537.70vacuolar protein sorting-associated protein 13B-li... [more]
C3ZQS8_BRAFL1.060e-1537.70Uncharacterized protein n=2 Tax=Branchiostoma flor... [more]
H2XP00_CIOIN1.960e-1537.50Uncharacterized protein n=3 Tax=Ciona intestinalis... [more]
UPI00145500BC1.730e-1436.89LOW QUALITY PROTEIN: vacuolar protein sorting-asso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14097contigH-elongata_contig14097:1608..2404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue2.1e-50
Seed eggNOG ortholog2880.D8LBD2
Preferred nameVPS13B
KEGG koko:K19526
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.4473746-CDS-H-elongata_contig14097:1607..18531622929837.4473746-CDS-H-elongata_contig14097:1607..1853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14097 1608..1853 +
1691679177.7095232-CDS-H-elongata_contig14097:1607..18531691679177.7095232-CDS-H-elongata_contig14097:1607..1853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14097 1608..1853 +
1622929837.4668975-CDS-H-elongata_contig14097:2284..24041622929837.4668975-CDS-H-elongata_contig14097:2284..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14097 2285..2404 +
1691679177.7219267-CDS-H-elongata_contig14097:2284..24041691679177.7219267-CDS-H-elongata_contig14097:2284..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14097 2285..2404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14097.2838.1prot_H-elongata_contig14097.2838.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14097 1608..2404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14097.2838.1

>prot_H-elongata_contig14097.2838.1 ID=prot_H-elongata_contig14097.2838.1|Name=mRNA_H-elongata_contig14097.2838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVG
SLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLR
HASAGTLSSVSGVTNALSRNLE
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mRNA from alignment at H-elongata_contig14097:1608..2404+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14097.2838.1 ID=mRNA_H-elongata_contig14097.2838.1|Name=mRNA_H-elongata_contig14097.2838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig14097:1608..2404+ (Himanthalia elongata Himel1 dioecious)
CTGCAGGTATTCTTGTCCCTGGACAAATCGCCTCTGCTTTTCAGCCCCGT CGTGATGCGTGGCGTGCTAGCGCGGCCGGACGAGATTGTTGACAGGATCG CCTCCAACTACGCCGTGGACGCCTTGTTGCGGTCGCTCGCGGTGGTGGGA TCACTGGAGGCGCTCGGCAGCCCTACCACGCTGCTCTCGGAGTGGGGCAA GGGCGTGTACGACTTGTTCGCGATGCCCATTAACGCCTTTCATCAGGTAG CTTCTTTCGTTTCTTCTCGGGCACGTCATCAACACATTTCCAAACATTTC CCTATGAACATACTACGAACAAACAAACAAAAATATGCTCTTGAGCAAAA TTGAGCGAGTAGTGTAAAACCCGTGGTCCTGGCGACATTTGCAGCCCCGG CCTTATCGATCACACTCACCCACGAGTCCACGAGGGAAATATTATTCCAC CATTCGACGCCCAACACGCCGCACGGTTCAAACGAAGGAGTAGCCCTGGA AGCAGCAAAGACGACCAAATACCGAATAGCAAGATATTCCGTATAGACTA TCCTATAGTTGGTATAGTATACATAGCCAATGTACTACATATATAAATAT AAACGATCAAGAAAGCTAAACCTCACTGACGCCTTCCTATCCGACGTCCC GCTCCTGAACATCTTCTTCTCTCTCAGGGTCCATCTTCCACCGTGCGAGC AACCTTCCGCGGAGTGTCCTCCCTCCTCAGACATGCCTCCGCTGGAACTC TGTCATCGGTCTCAGGCGTGACCAACGCCCTGTCCCGAAACCTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig14097:1608..2404+

>mRNA_H-elongata_contig14097.2838.1 ID=mRNA_H-elongata_contig14097.2838.1|Name=mRNA_H-elongata_contig14097.2838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig14097:1608..2404+ (Himanthalia elongata Himel1 dioecious)
CTGCAGGTATTCTTGTCCCTGGACAAATCGCCTCTGCTTTTCAGCCCCGT
CGTGATGCGTGGCGTGCTAGCGCGGCCGGACGAGATTGTTGACAGGATCG
CCTCCAACTACGCCGTGGACGCCTTGTTGCGGTCGCTCGCGGTGGTGGGA
TCACTGGAGGCGCTCGGCAGCCCTACCACGCTGCTCTCGGAGTGGGGCAA
GGGCGTGTACGACTTGTTCGCGATGCCCATTAACGCCTTTCATCAGCTGC
AGGTATTCTTGTCCCTGGACAAATCGCCTCTGCTTTTCAGCCCCGTCGTG
ATGCGTGGCGTGCTAGCGCGGCCGGACGAGATTGTTGACAGGATCGCCTC
CAACTACGCCGTGGACGCCTTGTTGCGGTCGCTCGCGGTGGTGGGATCAC
TGGAGGCGCTCGGCAGCCCTACCACGCTGCTCTCGGAGTGGGGCAAGGGC
GTGTACGACTTGTTCGCGATGCCCATTAACGCCTTTCATCAGGGTCCATC
TTCCACCGTGCGAGCAACCTTCCGCGGAGTGTCCTCCCTCCTCAGACATG
CCTCCGCTGGAACTCTGTCATCGGTCTCAGGCGTGACCAACGCCCTGTCC
CGAAACCTCGAGGGTCCATCTTCCACCGTGCGAGCAACCTTCCGCGGAGT
GTCCTCCCTCCTCAGACATGCCTCCGCTGGAACTCTGTCATCGGTCTCAG
GCGTGACCAACGCCCTGTCCCGAAACCTCGAG
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