mRNA_H-elongata_contig14097.2838.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE) HSP 1 Score: 202 bits (514), Expect = 6.870e-58 Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 1
Query: 4 QVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
QVFL+LDKSPLLF PV +RGVLARPDEI ++IASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPI A QGPSST RATFRGVSSLLRHASAGTLSSVSGV+NALSRNL
Sbjct: 4355 QVFLALDKSPLLFRPVSLRGVLARPDEIAEQIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPIKAMPQGPSSTFRATFRGVSSLLRHASAGTLSSVSGVSNALSRNL 4474
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A0H5QH82_9EUKA (VPS13_C domain-containing protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QH82_9EUKA) HSP 1 Score: 89.0 bits (219), Expect = 3.890e-18 Identity = 44/121 (36.36%), Postives = 77/121 (63.64%), Query Frame = 1
Query: 4 QVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
+ +L P+ S V ++ VL+ D ++ +++NY D ++ S + GS++ LG+PT L+S + KG+ L +P A +GP + AT +G+ SLL++ S GTL+SVSG T++L+RN++
Sbjct: 1726 RAYLGCQSLPVRLSAVELKSVLSSSDRLIKELSANYLADVIMISPLLFGSMDLLGNPTQLISSFSKGIQGLVRLPSRALTRGPRALAWATLQGIGSLLQNISEGTLTSVSGFTHSLARNVD 1846
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A7S1G5R3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5R3_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.100e-17 Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 10 FLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQ-----GPSSTVRATF-RGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
FLS+D++PL + V + V A P+ + + +NY DA+LRS A+VGSLE LG+PT + G G+ DLFA+P+ A G + + F RG SL H + G LSSV+G + ALSRNL+
Sbjct: 37 FLSVDEAPLALASVSLDCVRATPERLARELLANYIADAILRSPALVGSLELLGNPTRFMRGLGSGLRDLFALPMLAIRDREKGVGSGAGILTGFARGWGSLAAHVAEGALSSVAGFSAALSRNLD 161
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: UPI000719AC75 (vacuolar protein sorting-associated protein 13B-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AC75) HSP 1 Score: 87.0 bits (214), Expect = 1.870e-17 Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
L++FL+ D +PL F R + P + + + +YA A LR+ VVGSL+ LGSPT++L E G+ DLF MP GP S + RG +SLLRH SAG ++SV+ ++SRN++
Sbjct: 3696 LKLFLASDSTPLSFGAFERRDLCTTPWCLANALLRHYAAGAALRAGWVVGSLDLLGSPTSMLREVTSGMADLFRMPYEGATHGPGSFIAGMSRGAASLLRHTSAGAITSVTNFALSVSRNMD 3817
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A1W0XCX6_HYPDU (Vacuolar protein sorting-associated protein 13B n=2 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0XCX6_HYPDU) HSP 1 Score: 84.0 bits (206), Expect = 2.230e-16 Identity = 46/122 (37.70%), Postives = 75/122 (61.48%), Query Frame = 1
Query: 1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
L++F+ L+++PL FSP+ V + E+ + + +Y LLR+ V+GS++ LG+P +LL G DLF P N+ H GP S ++ +G SS + SAGTL+SV+ + ++SRNL+
Sbjct: 2402 LKMFVGLNQTPLSFSPIDCNDVNSTTTEVWNFVMQHYIRGTLLRAGWVIGSMDLLGNPASLLRSLSAGCGDLFVQPFNSLHAGPVSFLQGLAKGASSCVSGISAGTLTSVTNLAESVSRNLD 2523
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: R7TEM8_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TEM8_CAPTE) HSP 1 Score: 83.6 bits (205), Expect = 3.050e-16 Identity = 49/122 (40.16%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
L+VFL+ D +PL F + + ++ + YA AL R+ VVGSLE LG+PT L +GV DLF MP +GP + + RG+ SLLRH S GTL+S++ +++SRN+E
Sbjct: 3438 LKVFLASDNTPLKFGRYE-KSLFTSYQQLARSLTMYYASGALFRAGLVVGSLEILGNPTGLARHLSQGVADLFRMPYQGLTRGPGAFIGGVTRGMGSLLRHVSTGTLNSITSFASSVSRNME 3558
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: A0A6P4ZTE8_BRABE (vacuolar protein sorting-associated protein 13B-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZTE8_BRABE) HSP 1 Score: 82.0 bits (201), Expect = 1.060e-15 Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
++VF+S D + L F V +V +A +Y AL R+ V+GSL+ LGSP +LL G+ D F +P +GP + V +G SSL+RH SAGTL+S+ + N++SRN++
Sbjct: 3548 MKVFISSDHTRLTFKHFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNMD 3669
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: C3ZQS8_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZQS8_BRAFL) HSP 1 Score: 82.0 bits (201), Expect = 1.060e-15 Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
++VF+S D + L F V +V +A +Y AL R+ V+GSL+ LGSP +LL G+ D F +P +GP + V +G SSL+RH SAGTL+S+ + N++SRN++
Sbjct: 3879 MKVFISSDHTRLTFKNFSRTPVFTVSRNLVQDLALHYGSGALFRAGWVLGSLDILGSPASLLGSISSGISDFFRLPYEGLTRGPGAFVSGVTKGASSLVRHVSAGTLTSIVNLANSISRNMD 4000
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: H2XP00_CIOIN (Uncharacterized protein n=3 Tax=Ciona intestinalis TaxID=7719 RepID=H2XP00_CIOIN) HSP 1 Score: 81.3 bits (199), Expect = 1.960e-15 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query: 4 QVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNL 363
++++S+D+ L FS R V E+ + +Y + + + V+GSL+ LG+P T L + KGV D MP GP++ V RG+SSLLRH S+GTL SV+ + +++SRNL
Sbjct: 3092 KLYVSIDRGVLSFSKFSCRDVDTTVAELTQELMRHYFAETVFGAGWVIGSLDLLGNPATALRSYAKGVSDFLLMPYEGLMMGPTAFVGGFTRGLSSLLRHLSSGTLRSVTNIASSISRNL 3211
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Match: UPI00145500BC (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13B-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145500BC) HSP 1 Score: 78.6 bits (192), Expect = 1.730e-14 Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGSLEALGSPTTLLSEWGKGVYDLFAMPINAFHQGPSSTVRATFRGVSSLLRHASAGTLSSVSGVTNALSRNLE 366
L++F+++D +PL F+ V A ++V + +Y AL ++ V+GSLE LG+P LL G+ D F +P +GP++ V G SSLL+H SAGTL+S++ +++SRNL+
Sbjct: 3679 LKLFIAVDSTPLSFNQFDSGPVFATTRQLVQALTVHYTSGALFKAGWVLGSLEILGNPAGLLRNVRSGLTDSFMLPYEGLTRGPAAFVAGVTSGTSSLLKHLSAGTLTSITMFASSVSRNLD 3800 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14097.2838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14097.2838.1 >prot_H-elongata_contig14097.2838.1 ID=prot_H-elongata_contig14097.2838.1|Name=mRNA_H-elongata_contig14097.2838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp LQVFLSLDKSPLLFSPVVMRGVLARPDEIVDRIASNYAVDALLRSLAVVGback to top mRNA from alignment at H-elongata_contig14097:1608..2404+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14097.2838.1 ID=mRNA_H-elongata_contig14097.2838.1|Name=mRNA_H-elongata_contig14097.2838.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=797bp|location=Sequence derived from alignment at H-elongata_contig14097:1608..2404+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14097:1608..2404+ >mRNA_H-elongata_contig14097.2838.1 ID=mRNA_H-elongata_contig14097.2838.1|Name=mRNA_H-elongata_contig14097.2838.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig14097:1608..2404+ (Himanthalia elongata Himel1 dioecious)back to top |