mRNA_H-elongata_contig140899.2833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140899.2833.1
Unique NamemRNA_H-elongata_contig140899.2833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: A0A1W0AA17_9STRA (Peptidylprolyl isomerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA17_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.240e-18
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            Q+PF + +GLG VIRGWDEGVMNM +GEVA+LTCSPDYAYG  G
Sbjct:   77 QQPFQFQVGLGSVIRGWDEGVMNMALGEVARLTCSPDYAYGSRG 120
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: A0A022RFZ9_ERYGU (Peptidylprolyl isomerase n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RFZ9_ERYGU)

HSP 1 Score: 78.6 bits (192), Expect = 9.670e-18
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            QEPFS+ +G+GKVI+GWDEGV+ M +GEVA+LTCSPDYAYG  G
Sbjct:   47 QEPFSFQVGMGKVIKGWDEGVLGMQVGEVARLTCSPDYAYGTGG 90
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: A0A7C9D820_OPUST (Peptidylprolyl isomerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9D820_OPUST)

HSP 1 Score: 78.6 bits (192), Expect = 9.670e-18
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            QEPFS+ +GLGKVI+GWDEGV+ M +GEVA+LTCSPDYAYG  G
Sbjct:   47 QEPFSFNVGLGKVIKGWDEGVLGMQVGEVARLTCSPDYAYGSSG 90
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: H6BDQ1_LOLPR (Peptidylprolyl isomerase (Fragment) n=1 Tax=Lolium perenne TaxID=4522 RepID=H6BDQ1_LOLPR)

HSP 1 Score: 77.0 bits (188), Expect = 1.330e-17
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            QEPF++ IGLGKVI+GWDEGV++M +GEVA+LTC+PDYAYG  G
Sbjct:    6 QEPFAFNIGLGKVIKGWDEGVLSMQLGEVARLTCTPDYAYGAGG 49
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: A0A6P6VT38_COFAR (Peptidylprolyl isomerase n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VT38_COFAR)

HSP 1 Score: 77.0 bits (188), Expect = 3.910e-17
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            QEPF++ IG GKVIRGWDEGV+ M +GEVA+LTCSPDYAYG  G
Sbjct:   47 QEPFAFQIGQGKVIRGWDEGVLGMQVGEVARLTCSPDYAYGPSG 90
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: UPI001F5DD5E2 (peptidyl-prolyl cis-trans isomerase FKBP12-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DD5E2)

HSP 1 Score: 77.0 bits (188), Expect = 3.910e-17
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            QEPF++ IGLGKVI+GWDEGV++M +GEVA+LTC+PDYAYG  G
Sbjct:   47 QEPFAFNIGLGKVIKGWDEGVLSMQLGEVARLTCTPDYAYGAGG 90
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: A0A067C9L6_SAPPC (Peptidylprolyl isomerase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9L6_SAPPC)

HSP 1 Score: 76.6 bits (187), Expect = 5.550e-17
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            Q+PF++ +G+G VIRGWDEGV+ M +GEVA+LTCSPDYAYG  G
Sbjct:   47 QQPFTFQVGMGSVIRGWDEGVLGMALGEVARLTCSPDYAYGARG 90
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BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: A0A1V9YZR0_9STRA (Peptidylprolyl isomerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZR0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.120e-17
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            Q+PF + +GLG VIRGWDEGV++M +GEVA+LTCSPDYAYG  G
Sbjct:   79 QQPFQFQVGLGNVIRGWDEGVLSMALGEVARLTCSPDYAYGARG 122
[Close]
BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: S8CG40_9LAMI (Peptidylprolyl isomerase n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8CG40_9LAMI)

HSP 1 Score: 76.3 bits (186), Expect = 7.880e-17
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            Q+PFS+ IGLGKVI+GWDEGV+ M +GEVA+L CSPDYAYG  G
Sbjct:   47 QQPFSFQIGLGKVIKGWDEGVLGMQVGEVARLRCSPDYAYGAGG 90
[Close]
BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Match: A0A7S0QEE3_9CRYP (Peptidylprolyl isomerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QEE3_9CRYP)

HSP 1 Score: 75.9 bits (185), Expect = 9.090e-17
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG 132
            Q+PF + IGLGKVI GWDEG + M +GEVAKLTCSPDYAYG  G
Sbjct:   39 QQPFEFQIGLGKVITGWDEGCLGMAVGEVAKLTCSPDYAYGAAG 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140899.2833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W0AA17_9STRA7.240e-1875.00Peptidylprolyl isomerase n=1 Tax=Thraustotheca cla... [more]
A0A022RFZ9_ERYGU9.670e-1872.73Peptidylprolyl isomerase n=1 Tax=Erythranthe gutta... [more]
A0A7C9D820_OPUST9.670e-1875.00Peptidylprolyl isomerase n=1 Tax=Opuntia streptaca... [more]
H6BDQ1_LOLPR1.330e-1772.73Peptidylprolyl isomerase (Fragment) n=1 Tax=Lolium... [more]
A0A6P6VT38_COFAR3.910e-1775.00Peptidylprolyl isomerase n=4 Tax=Coffea TaxID=1344... [more]
UPI001F5DD5E23.910e-1772.73peptidyl-prolyl cis-trans isomerase FKBP12-like n=... [more]
A0A067C9L6_SAPPC5.550e-1768.18Peptidylprolyl isomerase n=1 Tax=Saprolegnia paras... [more]
A0A1V9YZR0_9STRA6.120e-1770.45Peptidylprolyl isomerase n=1 Tax=Achlya hypogyna T... [more]
S8CG40_9LAMI7.880e-1772.73Peptidylprolyl isomerase n=1 Tax=Genlisea aurea Ta... [more]
A0A7S0QEE3_9CRYP9.090e-1772.73Peptidylprolyl isomerase n=1 Tax=Cryptomonas curva... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140899contigH-elongata_contig140899:72..206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue3.8e-13
Seed eggNOG ortholog4155.Migut.N01091.1.p
Preferred nameFKBP12
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase
EggNOG OGs37VEG@33090,3GINI@35493,44KB6@71274,COG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.1954627-CDS-H-elongata_contig140899:71..2061622929837.1954627-CDS-H-elongata_contig140899:71..206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140899 72..206 -
1691679177.6350386-CDS-H-elongata_contig140899:71..2061691679177.6350386-CDS-H-elongata_contig140899:71..206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140899 72..206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140899.2833.1prot_H-elongata_contig140899.2833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140899 72..206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140899.2833.1

>prot_H-elongata_contig140899.2833.1 ID=prot_H-elongata_contig140899.2833.1|Name=mRNA_H-elongata_contig140899.2833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QEPFSYPIGLGKVIRGWDEGVMNMGIGEVAKLTCSPDYAYGVHG*
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mRNA from alignment at H-elongata_contig140899:72..206-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140899.2833.1 ID=mRNA_H-elongata_contig140899.2833.1|Name=mRNA_H-elongata_contig140899.2833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig140899:72..206- (Himanthalia elongata Himel1 dioecious)
CAGGAGCCGTTCAGCTACCCCATCGGGCTCGGGAAGGTTATCAGGGGATG
GGATGAGGGGGTGATGAACATGGGCATCGGCGAGGTTGCCAAGCTTACCT
GCAGCCCTGATTATGCTTACGGTGTTCACGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig140899:72..206-

>mRNA_H-elongata_contig140899.2833.1 ID=mRNA_H-elongata_contig140899.2833.1|Name=mRNA_H-elongata_contig140899.2833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig140899:72..206- (Himanthalia elongata Himel1 dioecious)
CAGGAGCCGTTCAGCTACCCCATCGGGCTCGGGAAGGTTATCAGGGGATG
GGATGAGGGGGTGATGAACATGGGCATCGGCGAGGTTGCCAAGCTTACCT
GCAGCCCTGATTATGCTTACGGTGTTCACGGGTGACAGGAGCCGTTCAGC
TACCCCATCGGGCTCGGGAAGGTTATCAGGGGATGGGATGAGGGGGTGAT
GAACATGGGCATCGGCGAGGTTGCCAAGCTTACCTGCAGCCCTGATTATG
CTTACGGTGTTCACGGGTGA
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