mRNA_H-elongata_contig14088.2830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14088.2830.1
Unique NamemRNA_H-elongata_contig14088.2830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 1.810e-99
Identity = 156/173 (90.17%), Postives = 159/173 (91.91%), Query Frame = 1 
Query:    4 ACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQ 522
            AC GIVLVVDAVEGVMMHTETLVKHAL EGLAITLCINK       VDRLLLELKLPPADAYFKLVHTLEEVN LI ANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAK+YCD+YG MS KELGKRLWGDAWVDPTTR FRKG+PPPDCQRTFVQFILEPMYKIYSQ
Sbjct:  242 ACDGIVLVVDAVEGVMMHTETLVKHALHEGLAITLCINK-------VDRLLLELKLPPADAYFKLVHTLEEVNALIAANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKVYCDVYGEMSPKELGKRLWGDAWVDPTTRAFRKGYPPPDCQRTFVQFILEPMYKIYSQ 407
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A7S2WSH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSH7_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.290e-73
Identity = 133/211 (63.03%), Postives = 154/211 (72.99%), Query Frame = 1 
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLY--GGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQARPPSPGMFLD 627
            RA  G+VL+VDAVEGVMM TE ++K ALLE L + L INK       VDRL++ELKLPPADAY+KLVHT+EEVN LI  + T VTG P RL PA GNVCFASAQHGW F+  SFAKIY + +   G+S+KEL  RLWGDAW+DP TRTF+K  P  D  RTFVQ+ILEPMYKIYSQ LGEE +TLR TL ELGV + +       P M LD
Sbjct:  197 RAADGVVLMVDAVEGVMMVTEKVIKAALLERLPLCLVINK-------VDRLIIELKLPPADAYYKLVHTIEEVNSLIAQHWTGVTGRPPRLSPALGNVCFASAQHGWCFSLLSFAKIYTNWHTDAGVSAKELSVRLWGDAWLDPETRTFKKRSPGMDVPRTFVQYILEPMYKIYSQALGEEPETLRVTLRELGVTLSK-------PEMHLD 393
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A835Z8L8_9STRA (GTPase of the U5 snRNP particle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L8_9STRA)

HSP 1 Score: 240 bits (613), Expect = 2.060e-70
Identity = 124/200 (62.00%), Postives = 146/200 (73.00%), Query Frame = 1 
Query:    4 ACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGG--MSSKELGKRLWGDAWVDPTTRTFRKGFPPP-----DCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRI 582
            AC G+VLVVDAVEGVMM TE L + AL  GL++ L INK       VDRL+LELKLPP DAYFKL HTLEEVN L+      V G P RLDPA+GNVCFASA HGW F+  SFA  YC+ + G  + +++L KRLWGD W+DP TR FRK  PPP     + +R+FVQFILEP+YKIYSQVLGEE D L+ TL+ELGVR+
Sbjct:  211 ACDGVVLVVDAVEGVMMQTERLARIALAGGLSVCLVINK-------VDRLILELKLPPRDAYFKLQHTLEEVNALLARCWAGVAGAPPRLDPARGNVCFASALHGWCFSVGSFAAAYCNYHAGSGVDARDLTKRLWGDVWMDPWTRQFRKAQPPPGPAGEEAERSFVQFILEPLYKIYSQVLGEEPDELQATLSELGVRL 403
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A7S2V7Q4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Q4_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.200e-65
Identity = 113/217 (52.07%), Postives = 143/217 (65.90%), Query Frame = 1 
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYG-------------------GMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQ 594
            RA  G+V+VVD  EGVM+ TE  + HA+ +GL I L +NK       VDRL+LELKLPPADAYFKL+HTLEEVNGL+   ++    PP RL P  GNVCFAS  HGW F+  SFA +YC  YG                   G+ S+EL +RLWGD ++DP TRTF+K       QRTF+QF+LEP+YKIYSQVLGE+A  L +TL E+GV + +++
Sbjct:  232 RAADGVVVVVDCAEGVMLGTERAISHAVSQGLPILLVLNK-------VDRLILELKLPPADAYFKLLHTLEEVNGLVQGQASAAGVPPPRLSPELGNVCFASGHHGWVFSLTSFADLYCRYYGRRGAYNAMRNASGSVDIADGVDSRELARRLWGDVYLDPITRTFKKQPTVEGVQRTFIQFVLEPLYKIYSQVLGEDAAALSRTLHEVGVHLRKEE 441
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A067CTK3_SAPPC (Tr-type G domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CTK3_SAPPC)

HSP 1 Score: 216 bits (550), Expect = 1.650e-61
Identity = 109/193 (56.48%), Postives = 143/193 (74.09%), Query Frame = 1 
Query:   13 GIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRD 591
            G VLVVDA+EGVMM+TE +VK ALL  L I L +NK       VDRL++ELKLPPADAYFKL+HT+EEVN +I  + T +  P +R+ P  GNVCFASAQHGW F+  SF+++Y +++ G++  EL KRLWGD +  P TRTF+K  P  +  R+FV FILEP+YKIY+QVLGE+  TL +TL +LG+R+ R+
Sbjct:  248 GAVLVVDAIEGVMMNTERIVKAALLSKLPILLVVNK-------VDRLIIELKLPPADAYFKLLHTIEEVNKIIETH-TPLGQPAKRVSPELGNVCFASAQHGWHFSLESFSRLYSEIHRGVNPTELAKRLWGDMYYAPATRTFKKKVPYENAPRSFVSFILEPIYKIYAQVLGEDTATLSKTLRDLGLRVRRE 432
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A1V4J3G1_PATFA (Tr-type G domain-containing protein n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4J3G1_PATFA)

HSP 1 Score: 202 bits (514), Expect = 8.920e-61
Identity = 103/200 (51.50%), Postives = 138/200 (69.00%), Query Frame = 1 
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR 600
            R   G+VL +DA EGVM++TE L+KHA+ E LA+T+CINK       +DRL+LELKLPP DAY+KL H ++EVNGLI   ST+       L P  GNVCF+S+Q+   FT  SFAKIY D YG ++ +E  KRLWGD + +P TR F K  P    QR+FV+FILEP+YKI +QV+G+   TL +TL ELG+ + +++ +
Sbjct:  111 RISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINK-------IDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDEN---LVLSPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKAPTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELK 300
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: W7TM02_9STRA (116 kDa U5 small nuclear ribonucleoprotein component n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM02_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.830e-60
Identity = 116/216 (53.70%), Postives = 144/216 (66.67%), Query Frame = 1 
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTE-VTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLY---GGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR-PPSPGMFLDCS 633
            RAC G +LVVDAVEGVMM TE L+K AL E LA+ L INK       VDRL+LELKLPPADAY+KL HT+EEVN  I  ++   +   PQRL PA GNV FASA HGW F+  SFA +Y   +       + E  KRLWG+A++D  +RTFRK  P P+  R+FVQFIL+P+YKIYS  LGE+A  L + + ELGVR+ R++    P P + L  S
Sbjct:  231 RACDGALLVVDAVEGVMMQTERLIKQALREQLALVLVINK-------VDRLILELKLPPADAYYKLKHTIEEVNACIERHTPNALVRRPQRLSPALGNVAFASAVHGWCFSLGSFASLYASYHKLGDQFETTEFAKRLWGNAYLDEASRTFRKQPPHPEADRSFVQFILDPLYKIYSHTLGEDAAELTEVIRELGVRVRREELHLDPKPLLKLVLS 439
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A5D6YFB3_9STRA (Tr-type G domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFB3_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.240e-59
Identity = 105/194 (54.12%), Postives = 141/194 (72.68%), Query Frame = 1 
Query:   13 GIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQ 594
            G VLVVDA+EGVMM+TE L+K AL   +A+ L +NK       VDRL++ELKLPP DAYFKL+HT+EEVN +I A+ T V    QRL P +GNVCFAS QHGW+FT  SFA++Y + + G+S+ +L  RLWGD +  P TRTF+K  P  +  R+FV FILEP+YKIY++VL E+A  L Q+L  +G+R+ +++
Sbjct:  244 GAVLVVDAIEGVMMNTERLIKAALKARVALVLVVNK-------VDRLIVELKLPPVDAYFKLLHTIEEVNAVIAAH-TPVGHTQQRLSPERGNVCFASGQHGWSFTLESFAQLYAETHPGVSAADLAPRLWGDKYYSPQTRTFKKTIPYENAPRSFVLFILEPLYKIYAKVLSEDAPQLAQSLRAMGLRLRKEE 429
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BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A1X7VQM3_AMPQE (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VQM3_AMPQE)

HSP 1 Score: 210 bits (534), Expect = 2.440e-59
Identity = 106/201 (52.74%), Postives = 140/201 (69.65%), Query Frame = 1 
Query:    1 RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGG-MSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR 600
            R C G+++VVD  EGVMM+TE L+KHAL E LAIT+C+NK       +DRL+LELKLPP DAY+KL HTL+E+N L+   S    G    + P  GNVCF+S+Q+G++FT  SFA++Y DLYGG  S KE  KRLWGD + + T RTF K  P  D QRTF++FILEP+YKI++Q +G+   TL   L ELGV + + + +
Sbjct:  230 RLCDGVMIVVDVSEGVMMNTERLIKHALQEKLAITICMNK-------IDRLILELKLPPQDAYYKLKHTLDEINSLLSLYSESTEGVV--VSPLLGNVCFSSSQYGFSFTLESFAQLYSDLYGGGFSPKEFAKRLWGDIYFNKTKRTFTKKIPSTDSQRTFIEFILEPLYKIFAQTVGDVDTTLPSVLKELGVFLSKSELK 421
[Close]
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Match: A0A2P4XYL9_9STRA (U5 small nuclear ribonucleoprotein component n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYL9_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.630e-59
Identity = 105/194 (54.12%), Postives = 134/194 (69.07%), Query Frame = 1 
Query:   13 GIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDRLLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCFASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKGFPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQ 594
            G VLVVDAVEGVMM+TE LVK AL   +AI L +NK       VDRL++ELKLPPADAYFKL+HT+EE+N +I AN T      QRL P  GNVCFAS QHGW+FT  SFA+IY + Y G+    L  R WGD + +P TRTF K  P P   R+F+QF+LEP+YK+YS+VL  +   L  +L  +G+R+ +++
Sbjct:  201 GAVLVVDAVEGVMMNTERLVKAALRANVAIVLVVNK-------VDRLIIELKLPPADAYFKLLHTIEEINAIIEAN-TPANQEKQRLSPELGNVCFASGQHGWSFTLESFAQIYAETYPGVPPSALAARFWGDKYFNPQTRTFTKKSPYPGALRSFIQFVLEPLYKMYSKVLNGDPKELSVSLRAMGLRLKKEE 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14088.2830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L308_9PHAE1.810e-9990.17Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2WSH7_9STRA1.290e-7363.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z8L8_9STRA2.060e-7062.00GTPase of the U5 snRNP particle n=1 Tax=Tribonema ... [more]
A0A7S2V7Q4_9STRA1.200e-6552.07Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A067CTK3_SAPPC1.650e-6156.48Tr-type G domain-containing protein n=3 Tax=Saprol... [more]
A0A1V4J3G1_PATFA8.920e-6151.50Tr-type G domain-containing protein n=1 Tax=Patagi... [more]
W7TM02_9STRA2.830e-6053.70116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A5D6YFB3_9STRA2.240e-5954.12Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A1X7VQM3_AMPQE2.440e-5952.74116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A2P4XYL9_9STRA2.630e-5954.12U5 small nuclear ribonucleoprotein component n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14088contigH-elongata_contig14088:53..2762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score361.7
Seed ortholog evalue2.4e-97
Seed eggNOG ortholog2880.D8LIZ9
Preferred nameEF-TU
KEGG koko:K12852
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000003,GO:0000166,GO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000974,GO:0001672,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009506,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010154,GO:0010467,GO:0010847,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030312,GO:0030532,GO:0031445,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045595,GO:0045694,GO:0046483,GO:0046540,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051239,GO:0055044,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0097525,GO:0097526,GO:0099402,GO:0120114,GO:1901265,GO:1901360,GO:1901363,GO:1902275,GO:1902494,GO:1902802,GO:1990904,GO:2000026,GO:2000241
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0480@1,KOG0468@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categorysignal peptide
Exons5
Model size636
Cds size636
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14088.2830.1prot_H-elongata_contig14088.2830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14088 53..2762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.798659-CDS-H-elongata_contig14088:52..1931622929836.798659-CDS-H-elongata_contig14088:52..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 53..193 +
1691679177.445948-CDS-H-elongata_contig14088:52..1931691679177.445948-CDS-H-elongata_contig14088:52..193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 53..193 +
1622929836.8203812-CDS-H-elongata_contig14088:543..6181622929836.8203812-CDS-H-elongata_contig14088:543..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 544..618 +
1691679177.457926-CDS-H-elongata_contig14088:543..6181691679177.457926-CDS-H-elongata_contig14088:543..618Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 544..618 +
1622929836.841331-CDS-H-elongata_contig14088:1132..12641622929836.841331-CDS-H-elongata_contig14088:1132..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 1133..1264 +
1691679177.4682455-CDS-H-elongata_contig14088:1132..12641691679177.4682455-CDS-H-elongata_contig14088:1132..1264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 1133..1264 +
1622929836.861665-CDS-H-elongata_contig14088:1868..20421622929836.861665-CDS-H-elongata_contig14088:1868..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 1869..2042 +
1691679177.4759161-CDS-H-elongata_contig14088:1868..20421691679177.4759161-CDS-H-elongata_contig14088:1868..2042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 1869..2042 +
1622929836.8800507-CDS-H-elongata_contig14088:2648..27621622929836.8800507-CDS-H-elongata_contig14088:2648..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 2649..2762 +
1691679177.483998-CDS-H-elongata_contig14088:2648..27621691679177.483998-CDS-H-elongata_contig14088:2648..2762Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14088 2649..2762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14088.2830.1

>prot_H-elongata_contig14088.2830.1 ID=prot_H-elongata_contig14088.2830.1|Name=mRNA_H-elongata_contig14088.2830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=212bp
RACAGIVLVVDAVEGVMMHTETLVKHALLEGLAITLCINKASSGDIGVDR
LLLELKLPPADAYFKLVHTLEEVNGLIVANSTEVTGPPQRLDPAKGNVCF
ASAQHGWAFTTASFAKIYCDLYGGMSSKELGKRLWGDAWVDPTTRTFRKG
FPPPDCQRTFVQFILEPMYKIYSQVLGEEADTLRQTLAELGVRIGRDQAR
PPSPGMFLDCS*
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mRNA from alignment at H-elongata_contig14088:53..2762+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14088.2830.1 ID=mRNA_H-elongata_contig14088.2830.1|Name=mRNA_H-elongata_contig14088.2830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2710bp|location=Sequence derived from alignment at H-elongata_contig14088:53..2762+ (Himanthalia elongata Himel1 dioecious)
AGGGCCTGTGCCGGTATCGTGCTTGTGGTGGACGCCGTGGAGGGGGTCAT
GATGCACACCGAGACGCTCGTCAAGCATGCCCTTCTCGAGGGCCTGGCGA
TCACCCTGTGCATCAACAAGGCGAGTTCGGGGGATATCGGGGTTTGCAGA
CATCCCAGTTGGTGGTAAATCTACAACGGGTTTACTACGGCCTCATAGCC
CGGTGGTAACGGAAAACCAAACTAAACCAAAGTCGCTACCGATTCGTCTC
GGTATAGTAAAGAAAAAGACCGCGCGAAGGGTAATGATCCTGTTCGCGTG
ATTTGGATAGACATACAACAAAATTCTTCATCCAGAAAGGTACGACCGTA
CACCCCACTTGTAAACAATGGCGCGGAAGACGCGCTTCTTGATCGTTTAA
CGTACGTCTGGAGACCTCGGGTCGAGCTGCGAGCTATATCCATGCCTAGA
CCACGTGTGTACGTTCGTGTGCTTTTGTTGCACCTGCGCAGGTGGATCGG
CTTTTGCTGGAGCTGAAGCTGCCGCCGGCGGACGCTTACTTCAAGCTCGT
GCACACGCTGGAAGAGGTGAAGTTTCTTCGATTGCCTTCCATGCTCCTGG
GGGGGGGGGGGGGGGGGCGGGGGGGGGCGCGAAGGTGGAATTCCATATCC
CAAGGAGTTCGTATTATTTCTGTTGCGCCTCGCCTTGCCTCGCCGGGGAT
GCAGCCTGATGGGTTTAAGAGAGGAGACGGATGGGGCGTTCTCCAGTTTT
TCATGCCTTCCCTGTTAGACCATTACTGACCGCGCGTCCTCGGGCAGAGA
GAATGATGCATTGTTCCTACAGGGGGGAAGGGAGAGGGTAAAGGTCGGAC
AGAAAGGCCTATTACTAGTCGTCTTGTGACACAAGATGGACCAACAAACG
AACGTCGCCATCTAGTTCGTACCCCCTATAGCTTTGGGAGTTGCCCGCCC
CCTCTCTTTATTTTATCCAATGATATTTACGCTTCTGTATGGCCTTGTAT
TTTATAATTCATTTCATTTTCCCGCGTAATTTCACCAGCACGTACAACCC
CTCTCCCATCCTGCTGATGGTGTTTACAAGGTGAACGGCTTGATCGTCGC
CAACAGCACGGAAGTCACAGGCCCTCCTCAGCGCCTGGACCCCGCCAAGG
GGAACGTTTGTTTCGCCTCGGCGCAGCACGGGTGGGCCTTCACCACGGCG
TCCTTCGCAAAGGTGACGTCACGTTGACACCACCTTACCACCGATTCGCA
GTCGTGAGCTCACAAACGAGATTGTAACGACTAACCTCTCCGTTGCTCTT
CACGAAGAGAAGCGCGCAAGCTTCGTCATCGTACAACAGCAGTATGACGT
GCATAACCCGTCGTTTTGAAGGTTGGGCTGTTGACGATTTTTATTGTTTT
CATGCGCGCGCGCGGTAGTGTTGCGCTACTGGCTTCCTCTGGCGTGTTGC
CGTGGTCACCAGACGTGACGCGGTGCGTTCGGACGAGGGTGAAGTTGTAA
CCGGGTGGGATCTCGAAAGGTTCCTACACGCGAAGGCGTTTTTAGGGTCA
CATCCTCCGCACGTTTGGCCGCCAGAATGGCTGCTGCTGCTACCGCTGTC
GTTGTTTGGTCGCGGTTAACACGAACAAAACTTGCGCCGGGGGTGATGTG
AACTATTAGGGCTGTCACCCTGCCGGCACGCGTTGTTTTTAATAGGAGAA
ATAATGCCGCAGTATTGACTTGCTTCTTTTAGAATTAAGAATTAAAACAT
ACCAGTATAGATCATAGTATTAATAATTGCACCCCCTTCCTGCTATCGAC
GGTCCCTCCCGCGCAGATATACTGTGACCTGTACGGCGGTATGAGCTCGA
AGGAACTCGGCAAGCGCTTGTGGGGTGACGCTTGGGTGGACCCTACCACG
AGGACGTTCCGCAAGGGATTCCCTCCTCCCGACTGCCAGAGAACCTTCGT
GCAGTTTATCCTGGAGCCCATGTATAAGATATACTCTCAGGTTCGAGCTA
TTACCTTAGTTACCATAGCCTCAAATCACCAGTATAGCGCAGGATTTGGA
TGCGCGCTCTGATCTGTGCGAAAGGGCGAATAACCCCGGGTGGTCACGGC
ACGATGGCAAGCGATAGGGAGAGAACTGAGGGCGGTCACGACACGATGGC
TCGCGGAAAAGTTTAGCGAGGGTGTGCTTTTTGTCGGTGGACGTTTTTTC
TCGATAAAGTGTTTCCGTCAGGGGGGGGGATGGGGGGAGGGGCGATTTTT
GTCGCAGCAAGTATGCGAGCGAGCGAGCGAGCGTTCATCAAACTATCTTT
TACACGTCACGCGAACAAACTATCATCAAAGACCTAACAGACGCTCCACT
TCATTTCAAAGAACGAACGCTGTCGCTCGTTTTTGGTTTGTTTTTTGGGG
GAGGGAGGGAGAGGGGTTCTGTGTGTAGTAATTGTTTGCTGTGTTGATAC
TCTGTCTAGGCCGGCGTCGCGAGTGTTTTGTTGCTCTCTATCGTGTTTCG
AAAAGAGGTGTGCGCCGTGGCGCGTCGAGGGAAAATAGTCTTAACTAAAG
AGCACCAACCCCAAAAACAAACAAATTAAAAACAAAACATCGTCAGGTGC
TGGGCGAGGAAGCGGACACGTTGAGGCAGACGCTGGCCGAGCTGGGTGTG
CGCATCGGCAGGGACCAGGCGAGACCGCCCTCTCCTGGGATGTTCTTGGA
TTGTTCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig14088:53..2762+

>mRNA_H-elongata_contig14088.2830.1 ID=mRNA_H-elongata_contig14088.2830.1|Name=mRNA_H-elongata_contig14088.2830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1272bp|location=Sequence derived from alignment at H-elongata_contig14088:53..2762+ (Himanthalia elongata Himel1 dioecious)
AGGGCCTGTGCCGGTATCGTGCTTGTGGTGGACGCCGTGGAGGGGGTCAT
GATGCACACCGAGACGCTCGTCAAGCATGCCCTTCTCGAGGGCCTGGCGA
TCACCCTGTGCATCAACAAGGCGAGTTCGGGGGATATCGGGAGGGCCTGT
GCCGGTATCGTGCTTGTGGTGGACGCCGTGGAGGGGGTCATGATGCACAC
CGAGACGCTCGTCAAGCATGCCCTTCTCGAGGGCCTGGCGATCACCCTGT
GCATCAACAAGGCGAGTTCGGGGGATATCGGGGTGGATCGGCTTTTGCTG
GAGCTGAAGCTGCCGCCGGCGGACGCTTACTTCAAGCTCGTGCACACGCT
GGAAGAGGTGGATCGGCTTTTGCTGGAGCTGAAGCTGCCGCCGGCGGACG
CTTACTTCAAGCTCGTGCACACGCTGGAAGAGGTGAACGGCTTGATCGTC
GCCAACAGCACGGAAGTCACAGGCCCTCCTCAGCGCCTGGACCCCGCCAA
GGGGAACGTTTGTTTCGCCTCGGCGCAGCACGGGTGGGCCTTCACCACGG
CGTCCTTCGCAAAGGTGAACGGCTTGATCGTCGCCAACAGCACGGAAGTC
ACAGGCCCTCCTCAGCGCCTGGACCCCGCCAAGGGGAACGTTTGTTTCGC
CTCGGCGCAGCACGGGTGGGCCTTCACCACGGCGTCCTTCGCAAAGATAT
ACTGTGACCTGTACGGCGGTATGAGCTCGAAGGAACTCGGCAAGCGCTTG
TGGGGTGACGCTTGGGTGGACCCTACCACGAGGACGTTCCGCAAGGGATT
CCCTCCTCCCGACTGCCAGAGAACCTTCGTGCAGTTTATCCTGGAGCCCA
TGTATAAGATATACTCTCAGATATACTGTGACCTGTACGGCGGTATGAGC
TCGAAGGAACTCGGCAAGCGCTTGTGGGGTGACGCTTGGGTGGACCCTAC
CACGAGGACGTTCCGCAAGGGATTCCCTCCTCCCGACTGCCAGAGAACCT
TCGTGCAGTTTATCCTGGAGCCCATGTATAAGATATACTCTCAGGTGCTG
GGCGAGGAAGCGGACACGTTGAGGCAGACGCTGGCCGAGCTGGGTGTGCG
CATCGGCAGGGACCAGGCGAGACCGCCCTCTCCTGGGATGTTCTTGGATT
GTTCGTGAGTGCTGGGCGAGGAAGCGGACACGTTGAGGCAGACGCTGGCC
GAGCTGGGTGTGCGCATCGGCAGGGACCAGGCGAGACCGCCCTCTCCTGG
GATGTTCTTGGATTGTTCGTGA
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