mRNA_H-elongata_contig140832.2827.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: D7G8P0_ECTSI (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P0_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 3.930e-22 Identity = 44/55 (80.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
LAKAID +FGSMD MK QFG AAGVFGSGWAWLGCTPDGKLAIT TPNQ P
Sbjct: 183 LAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLM 237
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A835ZFH9_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH9_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 4.230e-20 Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
L AIDASFGS DAMKE+FGAAAAGVFGSGWAWLG T DGKL IT+TPNQ P
Sbjct: 158 LTMAIDASFGSFDAMKEKFGAAAAGVFGSGWAWLGVTKDGKLDITTTPNQDNPLM 212
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: L1K0Q9_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0Q9_GUITC) HSP 1 Score: 88.2 bits (217), Expect = 8.690e-20 Identity = 43/55 (78.18%), Postives = 45/55 (81.82%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
L KAIDASFGSMD MKE+F AAAA FGSGWAWLG TP+GKLAITSTPNQ P
Sbjct: 162 LQKAIDASFGSMDKMKEEFNAAAAKRFGSGWAWLGVTPEGKLAITSTPNQDNPLM 216
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: Q3L2Z3_HAELA (Superoxide dismutase n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=Q3L2Z3_HAELA) HSP 1 Score: 80.9 bits (198), Expect = 1.980e-17 Identity = 39/54 (72.22%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPF 162
L A+DASFGSMD MKE+F AAAAG FGSGWAWLG DG L ITSTPNQ P
Sbjct: 104 LKAAVDASFGSMDVMKEKFNAAAAGRFGSGWAWLGVKADGSLGITSTPNQDNPL 157
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A1V5KYE5_9BACT (Superoxide dismutase n=1 Tax=Verrucomicrobia bacterium ADurb.Bin474 TaxID=1852931 RepID=A0A1V5KYE5_9BACT) HSP 1 Score: 78.6 bits (192), Expect = 1.260e-16 Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
LAKAID +FGS DA KE F A A FGSGWAWL TPDGKLA+TSTPNQ P
Sbjct: 98 LAKAIDQTFGSFDAFKEAFANAGANRFGSGWAWLVVTPDGKLAVTSTPNQDNPLM 152
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A087SEE8_AUXPR (Superoxide dismutase n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SEE8_AUXPR) HSP 1 Score: 76.6 bits (187), Expect = 1.480e-16 Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPF 162
L +AI+ASFGS+DA+KE+F AAA FGSGWAWL TP+GKL +TSTPNQ P
Sbjct: 27 LKQAIEASFGSVDALKEKFNAAATTRFGSGWAWLVVTPEGKLVVTSTPNQDNPL 80
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A7S3XQ28_HETAK (Superoxide dismutase [Fe] n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ28_HETAK) HSP 1 Score: 79.0 bits (193), Expect = 2.540e-16 Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
LA AID +FGSMDAMKE+F AAA G FGSGWAWLG DGKL I TPNQ P
Sbjct: 154 LATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLM 208
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A2A4HVS3_9SPHN (Superoxide dismutase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2A4HVS3_9SPHN) HSP 1 Score: 77.0 bits (188), Expect = 6.760e-16 Identity = 38/55 (69.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
LA+AIDA+FGSMD MK F AA G FGSGW WL PDGKLAITSTPNQ P
Sbjct: 119 LARAIDAAFGSMDKMKAAFKAAGTGRFGSGWVWLIVGPDGKLAITSTPNQDNPLM 173
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A2V0PH72_9CHLO (Superoxide dismutase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PH72_9CHLO) HSP 1 Score: 76.6 bits (187), Expect = 8.430e-16 Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
L AI+ +FGS+D MK +F AAAAG FGSGWAWLG PDG L ITSTPNQ P
Sbjct: 104 LKAAIEGAFGSLDEMKAKFNAAAAGRFGSGWAWLGVKPDGSLGITSTPNQDNPLM 158
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Match: A0A4S4NJ53_9BACT (Superoxide dismutase n=1 Tax=Lewinella litorea TaxID=2562452 RepID=A0A4S4NJ53_9BACT) HSP 1 Score: 76.3 bits (186), Expect = 8.910e-16 Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 1 LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQGEPFF 165
LA AID +FGS DA KE+F +AAAG FGSGWAWL DGKLA+TSTPNQ P
Sbjct: 95 LASAIDKAFGSYDAFKEKFSSAAAGQFGSGWAWLIVKNDGKLAVTSTPNQDNPLM 149 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140832.2827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig140832.2827.1 >prot_H-elongata_contig140832.2827.1 ID=prot_H-elongata_contig140832.2827.1|Name=mRNA_H-elongata_contig140832.2827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp LAKAIDASFGSMDAMKEQFGAAAAGVFGSGWAWLGCTPDGKLAITSTPNQback to top mRNA from alignment at H-elongata_contig140832:268..432- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig140832.2827.1 ID=mRNA_H-elongata_contig140832.2827.1|Name=mRNA_H-elongata_contig140832.2827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig140832:268..432- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig140832:268..432- >mRNA_H-elongata_contig140832.2827.1 ID=mRNA_H-elongata_contig140832.2827.1|Name=mRNA_H-elongata_contig140832.2827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig140832:268..432- (Himanthalia elongata Himel1 dioecious)back to top |