mRNA_H-elongata_contig14065.2819.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14065.2819.1
Unique NamemRNA_H-elongata_contig14065.2819.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig14065.2819.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 5.650e-70
Identity = 115/194 (59.28%), Postives = 148/194 (76.29%), Query Frame = 1 
Query:    1 SNRKDNVRAMDCANRALDGSPNLETAQKLLVVLLVE--KKWEETRRKCEVWAYKLDSCNGVGKIMSLQGYAEGGGPPRLCLRAMYASIREGYCKALRNAGLTDAFKAALDEATSMGVSWATGMTHRRQQVMERKDRAGQAYASGTYRVAQKLYTEAIGIDQEDFHMNALLFGNRAAAFMNLGKFEEALKDCDEA 576
            S RK+  RA+DCA RAL  +PNLE+AQKL++  L +  ++WEE +R+CEVWA+K  +C+      +L GYAEGGGPP LC+ AM+AS++EGYCKALRNAG TD FK AL  AT  GV WA  MT RRQ VM++K+RAG+AYAS  YR+A +LY+EAI +D +D++ NALLF NRAAA MNL + ++ALKDC EA
Sbjct:   13 STRKEIERAIDCAERALALAPNLESAQKLILDALEQGRRQWEEAQRRCEVWAHKRANCDFESGRNNLAGYAEGGGPPELCIAAMHASLQEGYCKALRNAGQTDKFKEALAAATGTGVPWAMSMTRRRQDVMDKKERAGKAYASNRYRLAHELYSEAICVDPQDYYTNALLFANRAAALMNLARNKDALKDCIEA 206
[Close]
BLAST of mRNA_H-elongata_contig14065.2819.1 vs. uniprot
Match: A0A485L7P9_9STRA (Aste57867_17071 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7P9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.610e-7
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  367 HRRQQVMERKDRAGQAYASGTYRVAQKLYTEAIGIDQEDFHMNALLFGNRAAAFMNLGKFEEALKDCD 570
            H  + + E +  A  A+ +G Y  A KLYT+A+ +D +D   NA++ GNRAAA+M+  +F +AL DCD
Sbjct:  671 HLWESMTEVRSVANNAFKAGNYEAAIKLYTKALQLDADDNVYNAMMHGNRAAAYMSTKQFRDALDDCD 738
[Close]
BLAST of mRNA_H-elongata_contig14065.2819.1 vs. uniprot
Match: A0A433QT99_9FUNG (J domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QT99_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 6.180e-7
Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  361 MTHRRQQVMER-KDRAGQAYASGTYRVAQKLYTEAIGIDQEDFHMNALLFGNRAAAFMNLGKFEEALKDCDEA 576
            +T  R + + R K+    AY +G  ++A   +T A+ IDQE+  +NA L+ NRAA F  LGK+ EA+KDCD A
Sbjct:  401 LTEARLEKLNRLKEDGNAAYKAGKLQIACGHWTAALEIDQENADINAKLYSNRAAVFTKLGKYAEAMKDCDAA 473
[Close]
BLAST of mRNA_H-elongata_contig14065.2819.1 vs. uniprot
Match: D2A586_TRICA (Protein unc-45 homolog B n=2 Tax=Tribolium TaxID=7069 RepID=D2A586_TRICA)

HSP 1 Score: 57.8 bits (138), Expect = 2.210e-6
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  379 QVMERKDRAGQAYASGTYRVAQKLYTEAIGIDQEDFHMNALLFGNRAAAFMNLGKFEEALKDCDEA 576
            + ++ K+    A+ SG +  A KLYT+AI ++  +    ++   NRAAA++ LGKFEEAL DCD +
Sbjct:    5 EALKYKEEGNAAFKSGNWDSAAKLYTKAINLETSESRDLSVFLKNRAAAYLKLGKFEEALSDCDRS 70
[Close]
BLAST of mRNA_H-elongata_contig14065.2819.1 vs. uniprot
Match: A0A8H8DIQ7_9FUNG (J domain-containing protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8DIQ7_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 1.890e-5
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  376 QQVMERKDRAGQAYASGTYRVAQKLYTEAIGIDQEDFHMNALLFGNRAAAFMNLGKFEEALKDCDEA 576
            +Q+  +K     A+ +G Y  A +LY+ A+  D ++   NA LF NRAA    +GK++EA+ DCD+A
Sbjct:  168 KQLELQKGNGNAAFKAGRYVEAAELYSAALKCDPDNVQTNAKLFSNRAACLAKIGKYKEAIADCDQA 234
[Close]
BLAST of mRNA_H-elongata_contig14065.2819.1 vs. uniprot
Match: A0A8H7UHN3_MORIS (J domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UHN3_MORIS)

HSP 1 Score: 54.7 bits (130), Expect = 2.190e-5
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  370 RRQQVMERKDRAGQA-YASGTYRVAQKLYTEAIGIDQEDFHMNALLFGNRAAAFMNLGKFEEALKDCDEA 576
            ++ + +E +  AG A + S   + A +LYT A+ ID E+   NA L+ NRAA    LGK++EAL DC++A
Sbjct:  240 KKARALESQKEAGNAAFKSSRLQEAYELYTSALEIDSENEGTNAKLYSNRAAVLQKLGKYDEALADCNKA 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14065.2819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI5.650e-7059.28Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
A0A485L7P9_9STRA3.610e-742.65Aste57867_17071 protein n=1 Tax=Aphanomyces stella... [more]
A0A433QT99_9FUNG6.180e-743.84J domain-containing protein n=1 Tax=Jimgerdemannia... [more]
D2A586_TRICA2.210e-640.91Protein unc-45 homolog B n=2 Tax=Tribolium TaxID=7... [more]
A0A8H8DIQ7_9FUNG1.890e-538.81J domain-containing protein n=1 Tax=Olpidium borno... [more]
A0A8H7UHN3_MORIS2.190e-541.43J domain-containing protein n=1 Tax=Mortierella is... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14065contigH-elongata_contig14065:5763..7908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue3e-56
Seed eggNOG ortholog2880.D7G5Y3
KEGG koko:K09523,ko:K09524,ko:K09527,ko:K09536
KEGG Pathwayko04141,ko05164,map04141,map05164
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759,KOG0713@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Exons4
Model size582
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14065.2819.1prot_H-elongata_contig14065.2819.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14065 5763..7881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.9344392-CDS-H-elongata_contig14065:5762..59451622929835.9344392-CDS-H-elongata_contig14065:5762..5945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 5763..5945 -
1691679177.0628254-CDS-H-elongata_contig14065:5762..59451691679177.0628254-CDS-H-elongata_contig14065:5762..5945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 5763..5945 -
1622929835.961668-CDS-H-elongata_contig14065:6328..64431622929835.961668-CDS-H-elongata_contig14065:6328..6443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 6329..6443 -
1691679177.0717409-CDS-H-elongata_contig14065:6328..64431691679177.0717409-CDS-H-elongata_contig14065:6328..6443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 6329..6443 -
1622929835.972832-CDS-H-elongata_contig14065:7485..76751622929835.972832-CDS-H-elongata_contig14065:7485..7675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 7486..7675 -
1691679177.0889478-CDS-H-elongata_contig14065:7485..76751691679177.0889478-CDS-H-elongata_contig14065:7485..7675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 7486..7675 -
1622929835.9838881-CDS-H-elongata_contig14065:7814..78811622929835.9838881-CDS-H-elongata_contig14065:7814..7881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 7815..7881 -
1691679177.1006062-CDS-H-elongata_contig14065:7814..78811691679177.1006062-CDS-H-elongata_contig14065:7814..7881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14065 7815..7881 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.0009966-UTR-H-elongata_contig14065:7881..79081622929836.0009966-UTR-H-elongata_contig14065:7881..7908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14065 7882..7908 -
1691679177.1139758-UTR-H-elongata_contig14065:7881..79081691679177.1139758-UTR-H-elongata_contig14065:7881..7908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14065 7882..7908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14065.2819.1

>prot_H-elongata_contig14065.2819.1 ID=prot_H-elongata_contig14065.2819.1|Name=mRNA_H-elongata_contig14065.2819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MDCANRALDGSPNLETAQKLLVVLLVEKKWEETRRKCEVWAYKLDSCNGV
GKIMSLQGYAEGGGPPRLCLRAMYASIREGYCKALRNAGLTDAFKAALDE
ATSMGVSWATGMTHRRQQVMERKDRAGQAYASGTYRVAQKLYTEAIGIDQ
EDFHMNALLFGNRAAAFMNLGKFEEALKDCDEAS*
back to top

mRNA from alignment at H-elongata_contig14065:5763..7908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14065.2819.1 ID=mRNA_H-elongata_contig14065.2819.1|Name=mRNA_H-elongata_contig14065.2819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2146bp|location=Sequence derived from alignment at H-elongata_contig14065:5763..7908- (Himanthalia elongata Himel1 dioecious)
TCGAACAGAAAGGACAACGTGCGCGCGATGGACTGCGCTAATAGAGCTCT
GGATGGTTCGCCGAACCTGGAGACAGCCCAGAAGCTACTGGTAGGTACTG
TACCGAACTCTCCTTGCGAGCCAATATTTGTTCTTTTTTGTAGTCTTACT
ATATTCTATCTTTTATTAGACCATGAAAACATGTATTGCTCGTCATGGTA
AGTGTTCTTTGAAACGCCTTCACCAGGTGAAAGTACTCCTAGTAGAGAAA
AAATGGGAAGAAACACGGCGGAAGTGCGAGGTGTGGGCCTACAAACTCGA
CAGCTGCAACGGCGTGGGTAAGATCATGTCTCTTCAAGGCTACGCGGAAG
GAGGCGGGCCGCCGCGACTGTGCCTGCGCGCTATGTATGCCTCCATACGC
GAGGGATATTGTAAGGCGCTACGGTAAGTTTTGAGTAGCGTTTTTTTTCC
CGTCTTTTAGGAGTGTTTGCCTCAAGTCCTGTTCTTATATATATTGGAGT
GTTTGCTCCACTCTCCCTCATTGCACGAATAGTTTCCACCGCGTTTTCCA
TTTTCCGATGTGTTCGAAAAAGGCACATATAGAGTGTTTACCCCCTCGTG
GTTGGTTGGCGATTTTTGCCGGCAATCCTGATGCGCACGACAGAGTTATT
TTAGCAAGTTTTTACCTGCTGCATCCGATGGTGGCGGATCGAAGAGAGTA
ATTTTTGCAGGGTTGTGGGACATGCTGATTCATGGATAATGGTACAACAG
CTAAGGATTTCATTTTTACTACACTCGAGGCAGAACGGATGAAGCAAGAA
AATCGTTTTGCACGATAATTGGCTACATTTTATTCAAACAAAGTCCCAAA
TGTTTTTCTTTTACCGGTCCCATGCGGCGAAATCGATCACCATTAATATT
TTTCACATACCTGGTACCGTATGTTTTGGGGTATGTACATTACCTGCTGT
CAGCACGAAATCATCCCATGTGAGAGATCATCCCGTTTAGTATTTAGTCT
TGCTCTTGGCCAGTTGAACAGAAAAATTGAAGTTTCCCTGTCCCAGTTCA
CGCCTGAGAATTTAGTATCGTGGCCGTCTCGTCTCGCGTCGGCCCGCTTG
TCCTCACCCAGACTGAATTTGGTGGGGATAAATTGGGTTCCCCAATGCTC
GTGATCGCATCAGTTTTTGCAACAAAATCAATATTTGTTCCTACAATACC
CCCCTAGAAAGCACTGTCCTTTCCTTTTATTTCTGACGTTCTGTATACAG
ACTCATATCGCAGTCCCGAAAGTACGTTATATTTTATCTTGGCTTGGCTT
TCGGACGGTTGCATCGAGTTTTTTTGTCACGCCTCGACAGTAACTGTGAA
TGATCATGCACAAAGCACGTAAAACATATTAGTATTATTATTATTTTTTT
ATTAGACACTGTACCGTAAATAAACCACATGTCATACATTTACCATGGAT
ATCTACCCTACGCAGCAATGCCGGGCTGACGGATGCATTCAAGGCGGCAC
TGGATGAGGCCACTTCCATGGGCGTATCTTGGGCGACGGGCATGACTCAC
CGGCGGCAGCAAGTGATGGAGAGGAAAGATGTAAGGAAAACGTGTTTTGT
TGTCTCCGTAGAGTCTCAATACAATGAAGGGCTACGGTGCTGTTCGAGAT
GGGTACGAGGAGAAGTAAGCCCCGCTGCAAAACAAAAAATACTGGGAACA
GTAAACGCCTCCATATTTTTCGTTATTTATCTTACAGCGGTGAAAATGCT
ACACCTGTACCTGTACGTTAGTTATGACATGATAGGCAACCCAGCACCAC
TGGGCCAACACCGGCGTTACTACCAGTATCTGAGCTGAGATAGGCCATCC
CGGTTCGTGGATCGAAGGATTCAGCAACTTCTACCTTTTTTTCGTGTCAT
TGTCGGTCATCGTTCACCCTCTTCGCCCGCTTACAATTCACCCATGTCCT
CCTTGACACCCAGCGCGCGGGCCAAGCGTACGCCTCCGGCACTTACCGCG
TGGCGCAAAAGCTTTACACCGAGGCGATTGGAATCGACCAAGAAGACTTC
CACATGAACGCCCTTCTCTTTGGCAACCGGGCAGCCGCTTTCATGAACCT
CGGAAAGTTTGAAGAAGCCCTTAAAGATTGTGACGAGGCGAGTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14065:5763..7908-

>mRNA_H-elongata_contig14065.2819.1 ID=mRNA_H-elongata_contig14065.2819.1|Name=mRNA_H-elongata_contig14065.2819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig14065:5763..7908- (Himanthalia elongata Himel1 dioecious)
ATGGACTGCGCTAATAGAGCTCTGGATGGTTCGCCGAACCTGGAGACAGC
CCAGAAGCTACTGGTAGATGGACTGCGCTAATAGAGCTCTGGATGGTTCG
CCGAACCTGGAGACAGCCCAGAAGCTACTGGTAGTACTCCTAGTAGAGAA
AAAATGGGAAGAAACACGGCGGAAGTGCGAGGTGTGGGCCTACAAACTCG
ACAGCTGCAACGGCGTGGGTAAGATCATGTCTCTTCAAGGCTACGCGGAA
GGAGGCGGGCCGCCGCGACTGTGCCTGCGCGCTATGTATGCCTCCATACG
CGAGGGATATTGTAAGGCGCTACGTACTCCTAGTAGAGAAAAAATGGGAA
GAAACACGGCGGAAGTGCGAGGTGTGGGCCTACAAACTCGACAGCTGCAA
CGGCGTGGGTAAGATCATGTCTCTTCAAGGCTACGCGGAAGGAGGCGGGC
CGCCGCGACTGTGCCTGCGCGCTATGTATGCCTCCATACGCGAGGGATAT
TGTAAGGCGCTACGCAATGCCGGGCTGACGGATGCATTCAAGGCGGCACT
GGATGAGGCCACTTCCATGGGCGTATCTTGGGCGACGGGCATGACTCACC
GGCGGCAGCAAGTGATGGAGAGGAAAGATCAATGCCGGGCTGACGGATGC
ATTCAAGGCGGCACTGGATGAGGCCACTTCCATGGGCGTATCTTGGGCGA
CGGGCATGACTCACCGGCGGCAGCAAGTGATGGAGAGGAAAGATCGCGCG
GGCCAAGCGTACGCCTCCGGCACTTACCGCGTGGCGCAAAAGCTTTACAC
CGAGGCGATTGGAATCGACCAAGAAGACTTCCACATGAACGCCCTTCTCT
TTGGCAACCGGGCAGCCGCTTTCATGAACCTCGGAAAGTTTGAAGAAGCC
CTTAAAGATTGTGACGAGGCGAGTTGACGCGCGGGCCAAGCGTACGCCTC
CGGCACTTACCGCGTGGCGCAAAAGCTTTACACCGAGGCGATTGGAATCG
ACCAAGAAGACTTCCACATGAACGCCCTTCTCTTTGGCAACCGGGCAGCC
GCTTTCATGAACCTCGGAAAGTTTGAAGAAGCCCTTAAAGATTGTGACGA
GGCGAGTTGA
back to top